Wall clock time and date at job start Tue Mar 31 2020 07:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 O 1.42910 * 109.47182 * 239.99928 * 2 1 3 5 5 C 1.53001 * 109.47247 * 120.00115 * 2 1 3 6 6 S 1.81408 * 109.47067 * 185.00051 * 5 2 1 7 7 C 1.81399 * 102.99969 * 179.97438 * 6 5 2 8 8 C 1.50693 * 109.47309 * 179.97438 * 7 6 5 9 9 O 1.21285 * 120.00006 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.39230 * 120.00300 * 175.71168 * 10 8 7 12 12 C 1.39487 * 119.83192 * 215.00929 * 11 10 8 13 13 C 1.36376 * 120.16538 * 179.75875 * 12 11 10 14 14 C 1.40867 * 119.83176 * 0.51366 * 13 12 11 15 15 C 1.41152 * 120.16487 * 179.72099 * 14 13 12 16 16 H 1.08003 * 119.99530 * 214.80797 * 15 14 13 17 17 C 1.39897 * 120.00056 * 34.80221 * 15 14 13 18 18 N 1.30872 * 120.00429 * 355.56229 * 17 15 14 19 19 Si 1.86807 * 119.99916 * 175.56161 * 17 15 14 20 20 H 1.48496 * 109.47042 * 60.00379 * 19 17 15 21 21 H 1.48503 * 109.46986 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47164 * 300.00026 * 19 17 15 23 23 C 1.40867 * 119.67170 * 359.74122 * 14 13 12 24 24 C 1.36381 * 119.82752 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46893 * 300.00178 * 1 2 3 26 26 H 1.09003 * 109.46789 * 60.00155 * 1 2 3 27 27 H 1.08997 * 109.46769 * 180.02562 * 1 2 3 28 28 H 0.96707 * 113.99554 * 59.99944 * 4 2 1 29 29 H 1.09000 * 109.47267 * 65.00324 * 5 2 1 30 30 H 1.08996 * 109.46802 * 304.99690 * 5 2 1 31 31 H 1.09008 * 109.46924 * 59.99871 * 7 6 5 32 32 H 1.08995 * 109.46970 * 299.99937 * 7 6 5 33 33 H 0.96998 * 119.99583 * 355.70104 * 10 8 7 34 34 H 1.07997 * 119.91202 * 0.02562 * 12 11 10 35 35 H 1.08007 * 120.08147 * 180.25904 * 13 12 11 36 36 H 0.96996 * 120.00140 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.08791 * 179.97438 * 23 14 13 38 38 H 1.07997 * 119.91237 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 16 3.8480 -0.5932 1.3256 7 6 4.2568 -1.4916 2.8475 8 6 5.7493 -1.4756 3.0549 9 8 6.4667 -0.9138 2.2545 10 7 6.2871 -2.0864 4.1292 11 6 7.6703 -2.1489 4.2746 12 6 8.2571 -3.2745 4.8530 13 6 9.6116 -3.3451 4.9942 14 6 10.4178 -2.2730 4.5642 15 6 11.8201 -2.3361 4.7123 16 1 12.3806 -1.4398 4.9337 17 6 12.4839 -3.5596 4.5726 18 7 11.7980 -4.6592 4.3909 19 14 14.3495 -3.6237 4.6453 20 1 14.8114 -3.1133 5.9610 21 1 14.8037 -5.0268 4.4709 22 1 14.9163 -2.7821 3.5611 23 6 9.8176 -1.1373 3.9859 24 6 8.4620 -1.0832 3.8469 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7210 -0.2701 -1.9980 29 1 1.7518 -1.7715 1.2056 30 1 1.6055 -0.2617 2.1369 31 1 3.9129 -2.5227 2.7643 32 1 3.7667 -1.0125 3.6950 33 1 5.7104 -2.4822 4.8012 34 1 7.6373 -4.0939 5.1859 35 1 10.0648 -4.2190 5.4385 36 1 12.2583 -5.5075 4.2936 37 1 10.4292 -0.3114 3.6542 38 1 8.0003 -0.2131 3.4041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882319804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:53 Heat of formation + Delta-G solvation = -89.686952 kcal Electronic energy + Delta-G solvation = -20070.564588 eV Core-core repulsion = 16809.983235 eV Total energy + Delta-G solvation = -3260.581354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20714 -39.07095 -38.46988 -36.19234 -34.76328 -33.01200 -31.84488 -31.43867 -30.09492 -28.34120 -26.64241 -23.54913 -22.82093 -22.38634 -21.27342 -19.29070 -18.59904 -18.43020 -17.95981 -17.24948 -17.00669 -16.65179 -15.86128 -15.73650 -15.24664 -15.09494 -15.00858 -14.46251 -14.40412 -14.03221 -13.91729 -13.64882 -13.41012 -13.33034 -13.20874 -12.85159 -12.76041 -12.65500 -12.48207 -11.84897 -11.81536 -11.41293 -11.23735 -11.11827 -10.88231 -10.71602 -10.64299 -9.48567 -8.77271 -8.61726 -8.51340 -6.34401 0.44655 0.77362 1.12072 1.39150 1.44936 1.51136 1.61717 1.72177 2.23278 2.31788 2.79501 3.29166 3.63863 3.75138 3.85055 4.07950 4.14261 4.17646 4.24406 4.38364 4.46655 4.51684 4.64386 4.91836 4.96225 4.97424 5.11753 5.13052 5.27520 5.31876 5.41457 5.68060 5.88414 5.99912 6.11809 6.37588 6.62997 6.67585 6.89137 6.95449 6.98079 7.32398 8.41242 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.043764 B = 0.002461 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.647969 B =11376.702397 C =11547.463082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 H 0.061 0.939 4 O -0.583 6.583 5 C -0.088 4.088 6 S -0.247 6.247 7 C -0.107 4.107 8 C 0.510 3.490 9 O -0.560 6.560 10 N -0.638 5.638 11 C 0.020 3.980 12 C -0.116 4.116 13 C -0.160 4.160 14 C 0.067 3.933 15 C -0.498 4.498 16 H 0.073 0.927 17 C 0.027 3.973 18 N -0.841 5.841 19 Si 0.989 3.011 20 H -0.257 1.257 21 H -0.267 1.267 22 H -0.266 1.266 23 C -0.223 4.223 24 C -0.097 4.097 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.393 0.607 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.421 0.579 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.285 0.715 37 H 0.095 0.905 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.644 4.042 -2.536 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.054 3.946 3 H 0.079 0.921 4 O -0.392 6.392 5 C -0.236 4.236 6 S -0.021 6.021 7 C -0.258 4.258 8 C 0.297 3.703 9 O -0.438 6.438 10 N -0.284 5.284 11 C -0.074 4.074 12 C -0.136 4.136 13 C -0.180 4.180 14 C 0.065 3.935 15 C -0.528 4.528 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.468 5.468 19 Si 0.810 3.190 20 H -0.181 1.181 21 H -0.192 1.192 22 H -0.191 1.191 23 C -0.243 4.243 24 C -0.117 4.117 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.243 0.757 29 H 0.110 0.890 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.259 0.741 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.188 4.284 -3.384 21.880 hybrid contribution -0.190 -0.501 0.591 0.798 sum -21.378 3.782 -2.793 21.889 Atomic orbital electron populations 1.22420 0.93078 1.03396 1.04156 1.21504 0.94219 0.94746 0.84151 0.92148 1.86608 1.77696 1.57959 1.16892 1.23670 0.92729 1.05516 1.01662 1.88156 1.08724 1.73262 1.31981 1.23399 0.94134 1.06851 1.01372 1.20482 0.90446 0.78706 0.80637 1.90733 1.63237 1.44334 1.45474 1.42752 1.04984 1.56972 1.23668 1.17295 0.82777 0.96022 1.11318 1.20572 0.95082 0.95703 1.02271 1.21196 0.92230 1.00784 1.03786 1.18049 0.94270 0.91845 0.89332 1.19701 0.92685 0.95292 1.45157 0.90908 1.26756 1.05864 0.94209 0.91693 1.69813 1.39452 0.99898 1.37667 0.85145 0.75673 0.78313 0.79868 1.18126 1.19169 1.19101 1.20933 0.94449 1.00996 1.07878 1.20509 0.93575 0.97359 1.00252 0.90034 0.90551 0.91717 0.75711 0.89005 0.86219 0.84666 0.83753 0.74116 0.85436 0.86168 0.90419 0.88720 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.53 71.98 0.69 -0.67 16 2 C 0.11 1.63 3.57 30.59 0.11 1.74 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 O -0.58 -10.70 13.07 -148.98 -1.95 -12.64 16 5 C -0.09 -1.38 5.63 71.98 0.41 -0.97 16 6 S -0.25 -6.61 20.66 -56.49 -1.17 -7.78 16 7 C -0.11 -2.33 6.43 71.23 0.46 -1.87 16 8 C 0.51 17.25 7.68 87.65 0.67 17.93 16 9 O -0.56 -25.21 13.29 -3.05 -0.04 -25.25 16 10 N -0.64 -20.83 5.30 -303.12 -1.61 -22.44 16 11 C 0.02 0.86 6.30 38.57 0.24 1.10 16 12 C -0.12 -5.22 9.90 22.14 0.22 -5.01 16 13 C -0.16 -8.44 8.62 22.48 0.19 -8.25 16 14 C 0.07 3.80 5.55 -21.28 -0.12 3.68 16 15 C -0.50 -27.84 9.02 23.39 0.21 -27.63 16 16 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 17 C 0.03 1.39 5.42 85.24 0.46 1.85 16 18 N -0.84 -44.94 10.60 21.82 0.23 -44.71 16 19 Si 0.99 39.74 29.56 68.60 2.03 41.77 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 23 C -0.22 -11.95 9.74 22.48 0.22 -11.73 16 24 C -0.10 -4.82 8.61 22.14 0.19 -4.63 16 25 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.39 3.78 9.08 -74.05 -0.67 3.11 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.42 9.55 8.82 -92.71 -0.82 8.73 16 34 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 36 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 37 H 0.09 4.92 8.06 -2.91 -0.02 4.89 16 38 H 0.11 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -75.80 337.46 1.05 -74.75 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.40 Total: 30.76 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 3.95 Total: -34.46 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.38 Total: -67.15 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.99 Total: -37.89 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -1.17 Total: -7.78 kcal Total: -75.80 1.05 -74.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882319804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.934 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds