Wall clock time and date at job start Tue Mar 31 2020 07:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00391 * 2 1 4 4 H 1.09011 * 109.46902 * 5.00676 * 3 2 1 5 5 C 1.52999 * 109.47086 * 125.00262 * 3 2 1 6 6 N 1.46500 * 109.47758 * 245.00690 * 3 2 1 7 7 S 1.65591 * 120.00361 * 144.99683 * 6 3 2 8 8 O 1.42101 * 106.40500 * 311.46049 * 7 6 3 9 9 O 1.42104 * 106.40278 * 178.54374 * 7 6 3 10 10 C 1.76195 * 107.22084 * 65.00206 * 7 6 3 11 11 C 1.38233 * 120.00186 * 89.99343 * 10 7 6 12 12 C 1.38234 * 120.00037 * 179.72636 * 11 10 7 13 13 C 1.38235 * 120.00220 * 0.28719 * 12 11 10 14 14 C 1.50700 * 120.00255 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47288 * 89.99435 * 14 13 12 16 16 H 1.07997 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99538 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00471 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47118 * 90.00208 * 19 17 15 21 21 H 1.48501 * 109.47253 * 210.00387 * 19 17 15 22 22 H 1.48501 * 109.46801 * 330.00167 * 19 17 15 23 23 C 1.38237 * 119.99712 * 359.94731 * 13 12 11 24 24 C 1.38234 * 120.00033 * 0.02562 * 23 13 12 25 25 H 1.08004 * 120.00229 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00016 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99833 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47030 * 60.00669 * 5 3 2 29 29 H 1.09004 * 109.47284 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.47420 * 300.00197 * 5 3 2 31 31 H 0.96998 * 119.99441 * 325.00374 * 6 3 2 32 32 H 1.08002 * 120.00157 * 0.02562 * 11 10 7 33 33 H 1.07999 * 120.00009 * 180.25939 * 12 11 10 34 34 H 1.09005 * 109.47111 * 209.99797 * 14 13 12 35 35 H 1.09002 * 109.46493 * 329.99148 * 14 13 12 36 36 H 0.97001 * 120.00292 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.99643 * 180.02562 * 23 13 12 38 38 H 1.08003 * 119.99512 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3586 2.1316 0.0897 5 6 3.0351 1.3329 1.1816 6 7 2.8131 1.4362 -1.2518 7 16 3.0017 2.9250 -1.9519 8 8 1.7118 3.5205 -1.9821 9 8 3.7922 2.7240 -3.1156 10 6 3.9740 3.8993 -0.8521 11 6 5.3518 3.8999 -0.9634 12 6 6.1143 4.6687 -0.1041 13 6 5.4994 5.4323 0.8704 14 6 6.3307 6.2700 1.8075 15 6 6.5286 7.6411 1.2142 16 1 6.0954 7.8820 0.2547 17 6 7.2619 8.5883 1.8970 18 7 7.7890 8.2952 3.0656 19 14 7.5067 10.2881 1.1619 20 1 6.4062 11.1818 1.6040 21 1 8.8072 10.8418 1.6173 22 1 7.5013 10.1920 -0.3200 23 6 4.1217 5.4279 0.9848 24 6 3.3592 4.6596 0.1252 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 3.7400 0.5064 1.0919 29 1 3.5799 2.2770 1.1819 30 1 2.4774 1.2354 2.1130 31 1 3.1990 0.6510 -1.6706 32 1 5.8324 3.3035 -1.7248 33 1 7.1906 4.6725 -0.1938 34 1 5.8191 6.3592 2.7659 35 1 7.3004 5.7949 1.9561 36 1 8.3052 8.9615 3.5457 37 1 3.6413 6.0249 1.7459 38 1 2.2829 4.6565 0.2144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885053802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:42 Heat of formation + Delta-G solvation = -44.553105 kcal Electronic energy + Delta-G solvation = -21274.358971 eV Core-core repulsion = 18015.734768 eV Total energy + Delta-G solvation = -3258.624203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.84580 -37.56113 -36.96261 -35.76429 -33.69586 -32.56505 -31.57730 -30.60040 -29.44955 -27.43434 -23.74727 -23.33793 -22.36702 -20.92348 -20.50672 -19.35686 -17.87117 -17.28464 -16.58055 -16.43817 -15.46314 -15.08016 -14.65884 -14.39156 -14.30221 -14.16234 -13.83389 -13.20541 -13.11982 -12.94432 -12.55175 -12.27074 -12.13773 -12.03804 -11.95976 -11.70717 -11.69896 -11.49738 -11.04059 -10.94854 -10.91422 -10.54415 -10.49298 -9.89263 -9.77418 -9.72056 -9.57527 -8.59845 -8.54758 -8.38725 -6.18122 -4.23166 0.48563 1.31590 1.78234 1.93351 3.14064 3.23805 3.30420 3.34870 3.76873 4.11448 4.36711 4.37698 4.49679 4.76339 5.01180 5.10719 5.15640 5.19586 5.22627 5.27546 5.52085 5.65429 5.71163 5.78947 5.90069 5.93040 6.05046 6.23511 6.28711 6.31818 6.43875 6.49762 6.82186 6.84099 6.90079 7.27975 7.41821 7.57822 7.76992 8.12227 8.81692 9.41938 10.91885 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.003658 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.208291 B = 7653.023989 C = 8091.229476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.095 0.905 5 C -0.175 4.175 6 N -1.113 6.113 7 S 2.696 3.304 8 O -0.965 6.965 9 O -0.966 6.966 10 C -0.702 4.702 11 C -0.021 4.021 12 C -0.145 4.145 13 C 0.027 3.973 14 C 0.039 3.961 15 C -0.518 4.518 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.145 4.145 24 C -0.025 4.025 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.128 0.872 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 -16.664 -4.105 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.068 3.932 4 H 0.113 0.887 5 C -0.234 4.234 6 N -0.871 5.871 7 S 2.789 3.211 8 O -0.955 6.955 9 O -0.957 6.957 10 C -0.792 4.792 11 C -0.040 4.040 12 C -0.164 4.164 13 C 0.026 3.974 14 C 0.003 3.997 15 C -0.556 4.556 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.164 4.164 24 C -0.044 4.044 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.250 0.750 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.126 -16.163 -4.694 20.176 hybrid contribution 0.855 0.803 0.198 1.189 sum -10.271 -15.360 -4.496 19.017 Atomic orbital electron populations 1.24010 0.95906 1.02421 0.98610 1.22995 0.96017 0.97815 1.01273 1.19939 0.92740 0.97176 0.83329 0.88741 1.22376 0.99806 1.03719 0.97498 1.55691 1.68918 1.25802 1.36658 1.01585 0.73763 0.72509 0.73207 1.93556 1.39201 1.76351 1.86399 1.93566 1.71213 1.85329 1.45576 1.30304 1.07698 1.21320 1.19852 1.20759 0.91468 0.95702 0.96099 1.21244 1.00438 0.98296 0.96439 1.21114 0.94351 0.88969 0.92917 1.18537 0.94439 0.93544 0.93216 1.20973 1.33582 0.95669 1.05363 0.92280 1.25001 0.95258 0.99015 0.94847 1.69941 1.34553 1.34941 1.13545 0.86480 0.77641 0.83719 0.79579 1.20437 1.21032 1.19687 1.21235 0.94009 1.00363 1.00770 1.20760 0.99310 0.92732 0.91604 0.88041 0.88000 0.86769 0.91767 0.90989 0.91220 0.75006 0.85287 0.85379 0.94726 0.94735 0.92623 0.85364 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 14.32 29.02 0.42 -0.82 16 2 C -0.16 -1.23 9.02 -36.03 -0.32 -1.56 16 3 C 0.17 1.61 3.27 -69.08 -0.23 1.39 16 4 H 0.09 0.91 7.15 -51.92 -0.37 0.54 16 5 C -0.18 -1.59 9.50 37.16 0.35 -1.24 16 6 N -1.11 -11.08 5.46 -5.88 -0.03 -11.11 16 7 S 2.70 37.14 5.72 -107.50 -0.61 36.52 16 8 O -0.97 -15.52 16.63 -57.17 -0.95 -16.47 16 9 O -0.97 -15.60 17.28 -57.17 -0.99 -16.59 16 10 C -0.70 -10.77 5.07 -39.58 -0.20 -10.97 16 11 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 12 C -0.15 -2.65 9.70 -39.58 -0.38 -3.04 16 13 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 14 C 0.04 0.95 5.10 -29.04 -0.15 0.81 16 15 C -0.52 -13.97 9.09 -34.44 -0.31 -14.29 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.14 -2.61 9.70 -39.58 -0.38 -3.00 16 24 C -0.02 -0.39 8.56 -39.58 -0.34 -0.73 16 25 H 0.10 0.57 8.06 -52.48 -0.42 0.15 16 26 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 27 H 0.11 0.71 8.06 -52.48 -0.42 0.29 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.78 6.15 -51.93 -0.32 0.46 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.42 3.22 8.83 -34.46 -0.30 2.91 16 32 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 33 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.13 1.73 7.62 -52.48 -0.40 1.33 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -32.38 338.57 -9.45 -41.83 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.12 Total: 1.93 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: -2.56 Total: -32.56 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.70 Total: -35.80 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.94 Total: -33.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 37.14 SS G_CDS: -0.61 Total: 36.52 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.38 -9.45 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885053802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.728 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds