Wall clock time and date at job start Tue Mar 31 2020 07:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00391 * 2 1 4 4 H 1.09011 * 109.46902 * 5.00676 * 3 2 1 5 5 C 1.52999 * 109.47086 * 125.00262 * 3 2 1 6 6 N 1.46500 * 109.47758 * 245.00690 * 3 2 1 7 7 S 1.65591 * 120.00361 * 144.99683 * 6 3 2 8 8 O 1.42101 * 106.40500 * 311.46049 * 7 6 3 9 9 O 1.42104 * 106.40278 * 178.54374 * 7 6 3 10 10 C 1.76195 * 107.22084 * 65.00206 * 7 6 3 11 11 C 1.38233 * 120.00186 * 89.99343 * 10 7 6 12 12 C 1.38234 * 120.00037 * 179.72636 * 11 10 7 13 13 C 1.38235 * 120.00220 * 0.28719 * 12 11 10 14 14 C 1.50700 * 120.00255 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47288 * 89.99435 * 14 13 12 16 16 H 1.07997 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99538 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00471 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47118 * 90.00208 * 19 17 15 21 21 H 1.48501 * 109.47253 * 210.00387 * 19 17 15 22 22 H 1.48501 * 109.46801 * 330.00167 * 19 17 15 23 23 C 1.38237 * 119.99712 * 359.94731 * 13 12 11 24 24 C 1.38234 * 120.00033 * 0.02562 * 23 13 12 25 25 H 1.08004 * 120.00229 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00016 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99833 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47030 * 60.00669 * 5 3 2 29 29 H 1.09004 * 109.47284 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.47420 * 300.00197 * 5 3 2 31 31 H 0.96998 * 119.99441 * 325.00374 * 6 3 2 32 32 H 1.08002 * 120.00157 * 0.02562 * 11 10 7 33 33 H 1.07999 * 120.00009 * 180.25939 * 12 11 10 34 34 H 1.09005 * 109.47111 * 209.99797 * 14 13 12 35 35 H 1.09002 * 109.46493 * 329.99148 * 14 13 12 36 36 H 0.97001 * 120.00292 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.99643 * 180.02562 * 23 13 12 38 38 H 1.08003 * 119.99512 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3586 2.1316 0.0897 5 6 3.0351 1.3329 1.1816 6 7 2.8131 1.4362 -1.2518 7 16 3.0017 2.9250 -1.9519 8 8 1.7118 3.5205 -1.9821 9 8 3.7922 2.7240 -3.1156 10 6 3.9740 3.8993 -0.8521 11 6 5.3518 3.8999 -0.9634 12 6 6.1143 4.6687 -0.1041 13 6 5.4994 5.4323 0.8704 14 6 6.3307 6.2700 1.8075 15 6 6.5286 7.6411 1.2142 16 1 6.0954 7.8820 0.2547 17 6 7.2619 8.5883 1.8970 18 7 7.7890 8.2952 3.0656 19 14 7.5067 10.2881 1.1619 20 1 6.4062 11.1818 1.6040 21 1 8.8072 10.8418 1.6173 22 1 7.5013 10.1920 -0.3200 23 6 4.1217 5.4279 0.9848 24 6 3.3592 4.6596 0.1252 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 3.7400 0.5064 1.0919 29 1 3.5799 2.2770 1.1819 30 1 2.4774 1.2354 2.1130 31 1 3.1990 0.6510 -1.6706 32 1 5.8324 3.3035 -1.7248 33 1 7.1906 4.6725 -0.1938 34 1 5.8191 6.3592 2.7659 35 1 7.3004 5.7949 1.9561 36 1 8.3052 8.9615 3.5457 37 1 3.6413 6.0249 1.7459 38 1 2.2829 4.6565 0.2144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885053802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:41 Heat of formation + Delta-G solvation = -65.813139 kcal Electronic energy + Delta-G solvation = -21275.280875 eV Core-core repulsion = 18015.734768 eV Total energy + Delta-G solvation = -3259.546108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24906 -38.52469 -37.95216 -36.98313 -35.59840 -33.35764 -33.21656 -31.95958 -30.19933 -29.22792 -25.59133 -24.05418 -23.72529 -22.46438 -21.21113 -20.41256 -19.03445 -18.58713 -18.32621 -17.46556 -16.85946 -16.57258 -15.97849 -15.81338 -15.24913 -15.13337 -14.90737 -14.64740 -14.43788 -14.05850 -13.84453 -13.48990 -13.40995 -13.36099 -13.24103 -13.17804 -12.86116 -12.67813 -12.64456 -12.49522 -12.14636 -12.03209 -11.72595 -11.62679 -11.43587 -10.65547 -10.59441 -10.37591 -9.94561 -9.91937 -8.27299 -6.39987 -0.63978 -0.05565 0.41071 1.33043 1.38302 1.38656 1.50081 2.11671 2.34900 2.56835 2.84561 3.05422 3.32118 3.75795 3.88150 3.97820 4.12979 4.16756 4.29255 4.40427 4.48790 4.51658 4.59362 4.82345 4.89018 4.92073 5.03007 5.11450 5.22953 5.26119 5.26459 5.34044 5.35957 5.67106 5.73728 5.87346 5.87573 5.93059 6.10092 6.12578 6.71973 7.29179 8.82721 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.003658 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.208291 B = 7653.023989 C = 8091.229476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.090 0.910 5 C -0.175 4.175 6 N -1.097 6.097 7 S 2.722 3.278 8 O -0.984 6.984 9 O -0.986 6.986 10 C -0.697 4.697 11 C -0.017 4.017 12 C -0.155 4.155 13 C -0.002 4.002 14 C 0.048 3.952 15 C -0.534 4.534 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.153 4.153 24 C -0.017 4.017 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.429 0.571 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.267 0.733 37 H 0.130 0.870 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -17.912 -5.331 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.063 3.937 4 H 0.108 0.892 5 C -0.234 4.234 6 N -0.859 5.859 7 S 2.813 3.187 8 O -0.974 6.974 9 O -0.977 6.977 10 C -0.785 4.785 11 C -0.036 4.036 12 C -0.174 4.174 13 C -0.002 4.002 14 C 0.012 3.988 15 C -0.572 4.572 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.171 4.171 24 C -0.036 4.036 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.434 -17.408 -5.916 22.196 hybrid contribution 1.168 1.051 0.571 1.672 sum -11.266 -16.357 -5.346 20.568 Atomic orbital electron populations 1.24206 0.95949 1.03142 0.97550 1.23005 0.96123 0.97470 1.02104 1.20102 0.92753 0.98255 0.82629 0.89176 1.22373 0.99968 1.03034 0.98022 1.55358 1.68765 1.24724 1.37020 1.00804 0.72747 0.72744 0.72391 1.93535 1.39842 1.77421 1.86590 1.93538 1.71652 1.85766 1.46716 1.30734 1.07772 1.20744 1.19220 1.20988 0.91748 0.95053 0.95807 1.21285 1.00797 0.98660 0.96613 1.20800 0.95029 0.90597 0.93817 1.18258 0.93887 0.93381 0.93313 1.21299 1.33455 0.97230 1.05217 0.92826 1.25854 0.94937 1.02914 0.95198 1.70048 1.35303 1.36310 1.14791 0.85467 0.77859 0.79060 0.78820 1.19639 1.20341 1.19276 1.21277 0.93284 1.01035 1.01544 1.20986 1.00410 0.91540 0.90702 0.86259 0.88479 0.85043 0.90768 0.92937 0.90170 0.73354 0.82822 0.85393 0.96803 0.96912 0.92376 0.85254 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 14.32 67.79 0.97 -1.02 16 2 C -0.17 -2.06 9.02 25.65 0.23 -1.83 16 3 C 0.17 2.70 3.27 44.24 0.14 2.84 16 4 H 0.09 1.54 7.15 -2.38 -0.02 1.52 16 5 C -0.18 -2.82 9.50 71.98 0.68 -2.14 16 6 N -1.10 -18.96 5.46 -172.52 -0.94 -19.90 16 7 S 2.72 68.94 5.72 -56.49 -0.32 68.62 16 8 O -0.98 -29.49 16.63 -128.00 -2.13 -31.62 16 9 O -0.99 -29.58 17.28 -128.00 -2.21 -31.79 16 10 C -0.70 -20.27 5.07 22.27 0.11 -20.16 16 11 C -0.02 -0.52 9.52 22.27 0.21 -0.31 16 12 C -0.15 -5.70 9.70 22.27 0.22 -5.49 16 13 C 0.00 -0.09 5.07 -19.87 -0.10 -0.19 16 14 C 0.05 2.47 5.10 29.10 0.15 2.62 16 15 C -0.53 -29.69 9.09 25.60 0.23 -29.45 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.01 0.56 5.46 84.66 0.46 1.02 16 18 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 19 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.15 -5.55 9.70 22.27 0.22 -5.33 16 24 C -0.02 -0.52 8.56 22.27 0.19 -0.33 16 25 H 0.12 0.97 8.06 -2.91 -0.02 0.94 16 26 H 0.10 1.22 7.84 -2.91 -0.02 1.20 16 27 H 0.13 1.17 8.06 -2.91 -0.02 1.14 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.06 6.15 -2.38 -0.01 1.04 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.43 5.34 8.83 -96.75 -0.85 4.48 16 32 H 0.15 3.94 7.62 -2.91 -0.02 3.91 16 33 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 34 H 0.01 0.74 8.09 -2.38 -0.02 0.72 16 35 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 36 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.15 3.83 7.62 -2.91 -0.02 3.81 16 Total: -1.00 -69.63 338.57 0.63 -69.00 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.20 Total: 13.66 kcal Atomic # 6 Polarization: -63.49 SS G_CDS: 3.72 Total: -59.77 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -0.66 Total: -73.71 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -4.34 Total: -63.41 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 68.94 SS G_CDS: -0.32 Total: 68.62 kcal Total: -69.63 0.63 -69.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885053802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.188 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds