Wall clock time and date at job start Tue Mar 31 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00220 * 2 1 4 4 H 1.09004 * 109.47166 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.47365 * 240.00282 * 3 2 1 6 6 N 1.46503 * 109.46951 * 120.00215 * 3 2 1 7 7 S 1.65601 * 119.99955 * 215.00153 * 6 3 2 8 8 O 1.42098 * 106.40167 * 311.46028 * 7 6 3 9 9 O 1.42103 * 106.40054 * 178.53999 * 7 6 3 10 10 C 1.76202 * 107.21727 * 65.00183 * 7 6 3 11 11 C 1.38234 * 120.00123 * 90.00219 * 10 7 6 12 12 C 1.38230 * 119.99885 * 180.02562 * 11 10 7 13 13 C 1.38235 * 120.00326 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00236 * 179.70551 * 13 12 11 15 15 C 1.50690 * 109.47286 * 89.99933 * 14 13 12 16 16 H 1.07999 * 120.00161 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00164 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00395 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46911 * 59.99953 * 19 17 15 21 21 H 1.48499 * 109.47327 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47092 * 300.00321 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 13 12 11 24 24 C 1.38235 * 119.99672 * 270.02049 * 10 7 6 25 25 H 1.08001 * 119.99660 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.99996 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99660 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47245 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47035 * 300.00149 * 5 3 2 30 30 H 1.09000 * 109.47120 * 60.00475 * 5 3 2 31 31 H 0.96998 * 119.99825 * 35.00122 * 6 3 2 32 32 H 1.07992 * 119.99701 * 359.97438 * 11 10 7 33 33 H 1.08000 * 120.00356 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.46871 * 209.99878 * 14 13 12 35 35 H 1.09001 * 109.47017 * 329.99216 * 14 13 12 36 36 H 0.97005 * 120.00116 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 13 12 38 38 H 1.07997 * 120.00423 * 359.97438 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9431 1.3861 -1.2492 6 7 2.9059 1.3826 1.1962 7 16 3.1492 2.8397 1.9445 8 8 3.5048 3.7610 0.9228 9 8 3.9694 2.5781 3.0750 10 6 1.5907 3.3702 2.5725 11 6 1.2019 3.0118 3.8497 12 6 -0.0209 3.4276 4.3421 13 6 -0.8548 4.2022 3.5576 14 6 -2.1909 4.6500 4.0921 15 6 -2.0336 5.9756 4.7912 16 1 -1.0633 6.4470 4.8430 17 6 -3.1286 6.5872 5.3639 18 7 -4.3102 6.0133 5.3003 19 14 -2.9336 8.2300 6.2312 20 1 -2.4208 9.2393 5.2701 21 1 -4.2501 8.6712 6.7577 22 1 -1.9746 8.0853 7.3557 23 6 -0.4656 4.5615 2.2808 24 6 0.7568 4.1445 1.7878 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 3.4885 2.3299 -1.2490 29 1 3.6514 0.5576 -1.2493 30 1 2.3164 1.3286 -2.1392 31 1 3.3210 0.5804 1.5498 32 1 1.8532 2.4063 4.4624 33 1 -0.3249 3.1473 5.3398 34 1 -2.8953 4.7557 3.2670 35 1 -2.5666 3.9092 4.7978 36 1 -5.0806 6.4434 5.7035 37 1 -1.1172 5.1664 1.6677 38 1 1.0605 4.4246 0.7900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885053803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:44 Heat of formation + Delta-G solvation = -44.899073 kcal Electronic energy + Delta-G solvation = -21275.734160 eV Core-core repulsion = 18017.094954 eV Total energy + Delta-G solvation = -3258.639206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.82461 -37.56632 -36.94429 -35.75469 -33.68976 -32.53637 -31.57111 -30.59468 -29.45475 -27.44299 -23.74162 -23.37972 -22.37027 -20.93324 -20.47465 -19.33074 -17.78239 -17.24198 -16.75119 -16.44991 -15.35148 -15.12112 -14.53352 -14.39887 -14.33928 -14.17054 -13.83193 -13.19438 -13.11283 -12.86998 -12.64208 -12.26239 -12.17706 -11.98361 -11.92141 -11.77856 -11.70940 -11.49580 -11.04745 -10.93280 -10.90646 -10.54090 -10.48871 -9.88577 -9.75881 -9.71855 -9.56200 -8.60418 -8.54310 -8.39767 -6.17896 -4.23062 0.49616 1.31529 1.77823 1.97956 3.15353 3.25688 3.29869 3.33445 3.76066 4.10929 4.36834 4.40581 4.49022 4.76706 5.02379 5.10749 5.15577 5.19362 5.21728 5.26061 5.56221 5.65279 5.70880 5.78336 5.89751 5.92802 6.01388 6.23512 6.31477 6.34336 6.47830 6.49355 6.81975 6.83906 6.89787 7.27862 7.41687 7.57672 7.76977 8.12324 8.81466 9.41971 10.92086 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.003860 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.590545 B = 7253.012035 C = 7836.856140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.168 4.168 3 C 0.179 3.821 4 H 0.088 0.912 5 C -0.169 4.169 6 N -1.113 6.113 7 S 2.696 3.304 8 O -0.963 6.963 9 O -0.967 6.967 10 C -0.703 4.703 11 C -0.021 4.021 12 C -0.145 4.145 13 C 0.027 3.973 14 C 0.040 3.960 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.145 4.145 24 C -0.027 4.027 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.129 0.871 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.805 -12.478 -11.104 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.073 3.927 4 H 0.106 0.894 5 C -0.228 4.228 6 N -0.871 5.871 7 S 2.789 3.211 8 O -0.953 6.953 9 O -0.957 6.957 10 C -0.793 4.793 11 C -0.040 4.040 12 C -0.164 4.164 13 C 0.026 3.974 14 C 0.003 3.997 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.164 4.164 24 C -0.047 4.047 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.250 0.750 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.351 -11.840 -11.064 19.785 hybrid contribution -0.684 0.499 0.892 1.230 sum 10.667 -11.341 -10.171 18.597 Atomic orbital electron populations 1.24018 0.95849 1.02597 0.98029 1.23000 0.96032 0.97807 1.01918 1.19872 0.91390 0.96876 0.84606 0.89353 1.22300 1.00308 1.03442 0.96743 1.55720 1.64314 1.27364 1.39674 1.01635 0.73943 0.72525 0.73018 1.93559 1.81839 1.61673 1.58192 1.93565 1.66060 1.84675 1.51430 1.30323 1.24538 1.18279 1.06133 1.20763 0.95532 0.95127 0.92603 1.21249 0.94274 1.00293 1.00583 1.21120 0.97453 0.87102 0.91705 1.18532 0.87282 0.96975 0.96909 1.20933 0.94969 1.03915 1.35866 0.92336 1.24996 0.95087 0.97991 0.95996 1.69937 0.99394 1.39033 1.44626 0.86536 0.77352 0.83494 0.79996 1.20024 1.21094 1.20034 1.21241 0.96672 1.01721 0.96751 1.20790 0.92920 0.92798 0.98189 0.87998 0.87965 0.86809 0.90743 0.92032 0.91369 0.75013 0.85284 0.85347 0.94718 0.94720 0.92565 0.85343 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.36 9.02 -36.03 -0.32 -1.68 16 3 C 0.18 1.67 3.14 -69.08 -0.22 1.45 16 4 H 0.09 0.86 6.87 -51.93 -0.36 0.50 16 5 C -0.17 -1.42 9.50 37.15 0.35 -1.07 16 6 N -1.11 -11.10 5.46 -5.88 -0.03 -11.13 16 7 S 2.70 37.10 5.65 -107.50 -0.61 36.49 16 8 O -0.96 -15.19 16.54 -57.17 -0.95 -16.14 16 9 O -0.97 -15.62 17.28 -57.17 -0.99 -16.61 16 10 C -0.70 -10.99 5.82 -39.58 -0.23 -11.22 16 11 C -0.02 -0.34 9.52 -39.59 -0.38 -0.72 16 12 C -0.15 -2.69 9.70 -39.59 -0.38 -3.08 16 13 C 0.03 0.55 5.07 -104.62 -0.53 0.01 16 14 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 15 C -0.52 -14.04 9.09 -34.45 -0.31 -14.35 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.14 -2.65 9.70 -39.58 -0.38 -3.03 16 24 C -0.03 -0.44 8.90 -39.58 -0.35 -0.79 16 25 H 0.10 0.90 7.83 -52.49 -0.41 0.49 16 26 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 27 H 0.11 0.75 8.06 -52.49 -0.42 0.32 16 28 H 0.07 0.73 7.64 -51.93 -0.40 0.33 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.42 3.22 8.83 -34.47 -0.30 2.92 16 32 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 33 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.13 1.75 7.62 -52.49 -0.40 1.35 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -32.32 340.56 -9.50 -41.82 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.19 Total: 2.12 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: -2.59 Total: -33.04 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.70 Total: -35.84 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.93 Total: -32.75 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 37.10 SS G_CDS: -0.61 Total: 36.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.32 -9.50 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885053803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.076 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds