Wall clock time and date at job start Tue Mar 31 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00220 * 2 1 4 4 H 1.09004 * 109.47166 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.47365 * 240.00282 * 3 2 1 6 6 N 1.46503 * 109.46951 * 120.00215 * 3 2 1 7 7 S 1.65601 * 119.99955 * 215.00153 * 6 3 2 8 8 O 1.42098 * 106.40167 * 311.46028 * 7 6 3 9 9 O 1.42103 * 106.40054 * 178.53999 * 7 6 3 10 10 C 1.76202 * 107.21727 * 65.00183 * 7 6 3 11 11 C 1.38234 * 120.00123 * 90.00219 * 10 7 6 12 12 C 1.38230 * 119.99885 * 180.02562 * 11 10 7 13 13 C 1.38235 * 120.00326 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00236 * 179.70551 * 13 12 11 15 15 C 1.50690 * 109.47286 * 89.99933 * 14 13 12 16 16 H 1.07999 * 120.00161 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00164 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00395 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46911 * 59.99953 * 19 17 15 21 21 H 1.48499 * 109.47327 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47092 * 300.00321 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 13 12 11 24 24 C 1.38235 * 119.99672 * 270.02049 * 10 7 6 25 25 H 1.08001 * 119.99660 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.99996 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99660 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47245 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47035 * 300.00149 * 5 3 2 30 30 H 1.09000 * 109.47120 * 60.00475 * 5 3 2 31 31 H 0.96998 * 119.99825 * 35.00122 * 6 3 2 32 32 H 1.07992 * 119.99701 * 359.97438 * 11 10 7 33 33 H 1.08000 * 120.00356 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.46871 * 209.99878 * 14 13 12 35 35 H 1.09001 * 109.47017 * 329.99216 * 14 13 12 36 36 H 0.97005 * 120.00116 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 13 12 38 38 H 1.07997 * 120.00423 * 359.97438 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9431 1.3861 -1.2492 6 7 2.9059 1.3826 1.1962 7 16 3.1492 2.8397 1.9445 8 8 3.5048 3.7610 0.9228 9 8 3.9694 2.5781 3.0750 10 6 1.5907 3.3702 2.5725 11 6 1.2019 3.0118 3.8497 12 6 -0.0209 3.4276 4.3421 13 6 -0.8548 4.2022 3.5576 14 6 -2.1909 4.6500 4.0921 15 6 -2.0336 5.9756 4.7912 16 1 -1.0633 6.4470 4.8430 17 6 -3.1286 6.5872 5.3639 18 7 -4.3102 6.0133 5.3003 19 14 -2.9336 8.2300 6.2312 20 1 -2.4208 9.2393 5.2701 21 1 -4.2501 8.6712 6.7577 22 1 -1.9746 8.0853 7.3557 23 6 -0.4656 4.5615 2.2808 24 6 0.7568 4.1445 1.7878 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 3.4885 2.3299 -1.2490 29 1 3.6514 0.5576 -1.2493 30 1 2.3164 1.3286 -2.1392 31 1 3.3210 0.5804 1.5498 32 1 1.8532 2.4063 4.4624 33 1 -0.3249 3.1473 5.3398 34 1 -2.8953 4.7557 3.2670 35 1 -2.5666 3.9092 4.7978 36 1 -5.0806 6.4434 5.7035 37 1 -1.1172 5.1664 1.6677 38 1 1.0605 4.4246 0.7900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885053803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:44 Heat of formation + Delta-G solvation = -66.003239 kcal Electronic energy + Delta-G solvation = -21276.649305 eV Core-core repulsion = 18017.094954 eV Total energy + Delta-G solvation = -3259.554351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24722 -38.52635 -37.93905 -36.96475 -35.60081 -33.32935 -33.26899 -31.97352 -30.16049 -29.25197 -25.59755 -24.11157 -23.72462 -22.48634 -21.22512 -20.39932 -18.94548 -18.58532 -18.32761 -17.60748 -16.85637 -16.56291 -16.00249 -15.70711 -15.36417 -15.05068 -14.91439 -14.62685 -14.45778 -13.95899 -13.89678 -13.51770 -13.41486 -13.39394 -13.24708 -13.15492 -12.81915 -12.68682 -12.65884 -12.50623 -12.15187 -12.04706 -11.70205 -11.69282 -11.41944 -10.65232 -10.61205 -10.36333 -9.97043 -9.95189 -8.27296 -6.40185 -0.63322 -0.07182 0.38737 1.30553 1.38619 1.40038 1.48569 2.12711 2.34983 2.55927 2.82760 3.05393 3.32812 3.73969 3.86806 3.95774 4.10147 4.15628 4.30593 4.40427 4.46933 4.48169 4.59109 4.80775 4.90145 4.93944 5.02721 5.09422 5.22708 5.25297 5.25572 5.32592 5.37945 5.66621 5.72030 5.85086 5.85618 5.91634 6.09508 6.12691 6.71370 7.28965 8.82562 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.003860 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.590545 B = 7253.012035 C = 7836.856140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.164 4.164 3 C 0.169 3.831 4 H 0.083 0.917 5 C -0.169 4.169 6 N -1.097 6.097 7 S 2.723 3.277 8 O -0.979 6.979 9 O -0.987 6.987 10 C -0.701 4.701 11 C -0.019 4.019 12 C -0.155 4.155 13 C -0.003 4.003 14 C 0.049 3.951 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.153 4.153 24 C -0.021 4.021 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.429 0.571 32 H 0.154 0.846 33 H 0.129 0.871 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.131 0.869 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.633 -13.156 -11.901 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.183 4.183 3 C 0.063 3.937 4 H 0.101 0.899 5 C -0.228 4.228 6 N -0.859 5.859 7 S 2.813 3.187 8 O -0.968 6.968 9 O -0.977 6.977 10 C -0.787 4.787 11 C -0.038 4.038 12 C -0.174 4.174 13 C -0.004 4.004 14 C 0.012 3.988 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.172 4.172 24 C -0.040 4.040 25 H 0.109 0.891 26 H 0.133 0.867 27 H 0.152 0.848 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.267 0.733 32 H 0.172 0.828 33 H 0.147 0.853 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.171 -12.519 -11.850 21.694 hybrid contribution -1.187 0.606 1.044 1.692 sum 11.985 -11.914 -10.806 20.059 Atomic orbital electron populations 1.24139 0.96208 1.02824 0.98277 1.23057 0.95839 0.97887 1.01556 1.20084 0.91544 0.97581 0.84460 0.89916 1.22301 1.00537 1.03245 0.96680 1.55380 1.64367 1.26687 1.39438 1.00865 0.72683 0.72836 0.72311 1.93543 1.81726 1.63118 1.58457 1.93538 1.66355 1.85163 1.52648 1.30806 1.25129 1.17039 1.05773 1.21007 0.94799 0.94818 0.93150 1.21299 0.95077 1.00400 1.00603 1.20823 0.96413 0.89767 0.93349 1.18256 0.89338 0.95685 0.95535 1.21267 0.94816 1.05144 1.36139 0.92821 1.25847 0.94731 1.01558 0.96664 1.70047 1.00133 1.40654 1.45585 0.85527 0.77598 0.79184 0.78953 1.19351 1.20356 1.19426 1.21300 0.97841 1.02017 0.96020 1.21045 0.91798 0.91911 0.99294 0.89056 0.86688 0.84773 0.92219 0.90579 0.90066 0.73334 0.82828 0.85336 0.96752 0.96888 0.92358 0.85146 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.16 -2.19 9.02 25.64 0.23 -1.96 16 3 C 0.17 2.71 3.14 44.24 0.14 2.85 16 4 H 0.08 1.43 6.87 -2.39 -0.02 1.41 16 5 C -0.17 -2.38 9.50 71.98 0.68 -1.69 16 6 N -1.10 -18.81 5.46 -172.52 -0.94 -19.75 16 7 S 2.72 68.53 5.65 -56.49 -0.32 68.21 16 8 O -0.98 -28.66 16.54 -128.00 -2.12 -30.78 16 9 O -0.99 -29.50 17.28 -128.00 -2.21 -31.71 16 10 C -0.70 -20.67 5.82 22.27 0.13 -20.54 16 11 C -0.02 -0.59 9.52 22.27 0.21 -0.37 16 12 C -0.15 -5.79 9.70 22.27 0.22 -5.58 16 13 C 0.00 -0.13 5.07 -19.87 -0.10 -0.24 16 14 C 0.05 2.49 5.10 29.10 0.15 2.64 16 15 C -0.54 -29.82 9.09 25.60 0.23 -29.59 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.92 -54.07 13.29 21.45 0.28 -53.79 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C -0.15 -5.62 9.70 22.27 0.22 -5.40 16 24 C -0.02 -0.66 8.90 22.27 0.20 -0.46 16 25 H 0.09 1.53 7.83 -2.91 -0.02 1.51 16 26 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 27 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.06 1.04 7.64 -2.38 -0.02 1.02 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.43 5.25 8.83 -96.75 -0.85 4.39 16 32 H 0.15 4.02 7.62 -2.91 -0.02 4.00 16 33 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 34 H 0.01 0.76 8.08 -2.39 -0.02 0.75 16 35 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.16 3.89 7.62 -2.91 -0.02 3.86 16 Total: -1.00 -69.45 340.56 0.66 -68.79 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.20 Total: 14.37 kcal Atomic # 6 Polarization: -64.63 SS G_CDS: 3.74 Total: -60.89 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -0.66 Total: -73.54 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -4.33 Total: -62.49 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 68.53 SS G_CDS: -0.32 Total: 68.21 kcal Total: -69.45 0.66 -68.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885053803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.790 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds