Wall clock time and date at job start Tue Mar 31 2020 07:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.56708 * 2 1 4 4 C 1.53080 * 117.49198 * 214.28873 * 2 1 3 5 5 C 1.52996 * 59.98392 * 252.51441 * 4 2 1 6 6 H 1.09000 * 117.49811 * 107.50112 * 5 4 2 7 7 N 1.46501 * 117.49746 * 252.49857 * 5 4 2 8 8 S 1.65601 * 119.99590 * 213.74736 * 7 5 4 9 9 O 1.42100 * 106.40802 * 311.46314 * 8 7 5 10 10 O 1.42111 * 106.40173 * 178.54210 * 8 7 5 11 11 C 1.76199 * 107.21945 * 65.00302 * 8 7 5 12 12 C 1.38237 * 119.99918 * 89.99517 * 11 8 7 13 13 C 1.38235 * 120.00123 * 179.97438 * 12 11 8 14 14 C 1.38243 * 119.99602 * 359.96176 * 13 12 11 15 15 C 1.50706 * 119.99586 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47001 * 89.99822 * 15 14 13 17 17 H 1.08005 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00081 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46844 * 60.00490 * 20 18 16 22 22 H 1.48496 * 109.47153 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47045 * 300.00555 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.27275 * 14 13 12 25 25 C 1.38234 * 120.00034 * 269.97553 * 11 8 7 26 26 H 1.08997 * 109.46966 * 274.30799 * 1 2 3 27 27 H 1.08996 * 109.47077 * 34.31008 * 1 2 3 28 28 H 1.09000 * 109.47518 * 154.30827 * 1 2 3 29 29 H 1.09002 * 117.50834 * 145.03308 * 4 2 1 30 30 H 1.08995 * 117.51299 * 0.02562 * 4 2 1 31 31 H 0.96995 * 120.00254 * 33.75073 * 7 5 4 32 32 H 1.08000 * 120.00539 * 359.97438 * 12 11 8 33 33 H 1.07999 * 120.00181 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.46646 * 209.99280 * 15 14 13 35 35 H 1.09000 * 109.47248 * 329.99998 * 15 14 13 36 36 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 37 37 H 1.08004 * 119.99934 * 179.72684 * 24 14 13 38 38 H 1.07999 * 119.99990 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1210 0.7649 6 1 1.6111 -1.8583 1.2686 7 7 3.4932 -0.7906 1.4413 8 16 3.8731 -1.5138 2.8819 9 8 2.7215 -1.3963 3.7060 10 8 5.1506 -1.0162 3.2560 11 6 4.0830 -3.2338 2.5627 12 6 5.3288 -3.7266 2.2220 13 6 5.4937 -5.0761 1.9721 14 6 4.4128 -5.9331 2.0637 15 6 4.5924 -7.4043 1.7907 16 6 4.9427 -8.1140 3.0732 17 1 5.0273 -7.5555 3.9937 18 6 5.1553 -9.4763 3.0713 19 7 5.0528 -10.1562 1.9502 20 14 5.5902 -10.3560 4.6607 21 1 4.4968 -10.1649 5.6473 22 1 5.7671 -11.8056 4.3917 23 1 6.8529 -9.7966 5.2066 24 6 3.1660 -5.4396 2.3997 25 6 3.0020 -4.0906 2.6535 26 1 -0.3633 0.0772 1.0247 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3634 -0.9260 -0.4455 29 1 3.1718 -0.8766 -1.2683 30 1 1.6115 -1.8594 -1.2684 31 1 4.1028 -0.1484 1.0455 32 1 6.1734 -3.0572 2.1509 33 1 6.4669 -5.4610 1.7054 34 1 3.6659 -7.8150 1.3895 35 1 5.3954 -7.5442 1.0670 36 1 5.2027 -11.1146 1.9488 37 1 2.3207 -6.1084 2.4670 38 1 2.0289 -3.7058 2.9204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885176764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:19 Heat of formation + Delta-G solvation = -40.800361 kcal Electronic energy + Delta-G solvation = -21019.290701 eV Core-core repulsion = 17760.829229 eV Total energy + Delta-G solvation = -3258.461472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.82360 -38.44471 -37.12508 -35.79170 -33.69107 -32.93555 -31.56902 -30.59312 -28.31242 -27.44277 -23.73957 -22.56252 -22.20322 -21.05151 -20.85357 -19.54257 -17.92972 -17.27523 -16.74817 -16.44730 -15.42183 -15.09923 -14.50921 -14.41745 -14.33089 -13.91678 -13.74985 -13.28636 -13.11588 -12.84545 -12.39451 -12.26071 -12.13347 -12.10819 -11.99922 -11.94245 -11.71738 -11.58547 -11.49579 -10.95682 -10.91119 -10.51843 -10.49039 -10.29459 -9.77125 -9.66657 -9.17124 -8.60335 -8.54333 -8.39731 -6.17901 -4.23113 0.45706 1.31404 1.78182 2.97337 3.25670 3.29840 3.33313 3.49884 3.76968 4.10325 4.32391 4.36950 4.53665 4.58435 4.66092 4.85927 5.04084 5.15494 5.21390 5.22724 5.50973 5.52623 5.57212 5.70921 5.77297 5.78887 5.89802 5.94876 6.05457 6.23575 6.31397 6.48874 6.74812 6.82482 6.89638 7.27962 7.41783 7.57813 7.76967 8.12249 8.81432 9.41917 10.92099 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.003583 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.495339 B = 7812.336234 C = 8344.323761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.161 4.161 3 H 0.107 0.893 4 C -0.184 4.184 5 C 0.090 3.910 6 H 0.137 0.863 7 N -1.090 6.090 8 S 2.700 3.300 9 O -0.961 6.961 10 O -0.965 6.965 11 C -0.702 4.702 12 C -0.021 4.021 13 C -0.145 4.145 14 C 0.027 3.973 15 C 0.040 3.960 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.145 4.145 25 C -0.025 4.025 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.129 0.871 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 18.583 -5.893 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.182 4.182 3 H 0.125 0.875 4 C -0.224 4.224 5 C -0.018 4.018 6 H 0.154 0.846 7 N -0.845 5.845 8 S 2.793 3.207 9 O -0.951 6.951 10 O -0.955 6.955 11 C -0.792 4.792 12 C -0.041 4.041 13 C -0.164 4.164 14 C 0.027 3.973 15 C 0.003 3.997 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.727 3.273 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.164 4.164 25 C -0.045 4.045 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.250 0.750 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.207 18.701 -5.050 20.341 hybrid contribution 0.658 -1.019 0.182 1.226 sum -5.549 17.682 -4.868 19.161 Atomic orbital electron populations 1.21386 0.92261 1.02237 1.02366 1.22826 0.95848 0.95129 1.04392 0.87500 1.23617 1.02935 1.01482 0.94324 1.21438 0.86913 1.01366 0.92119 0.84590 1.55200 1.28379 1.57458 1.43459 1.01544 0.73170 0.73792 0.72238 1.93567 1.51012 1.86347 1.64218 1.93574 1.41525 1.79756 1.80673 1.30281 1.01289 1.24070 1.23561 1.20765 0.94537 0.96373 0.92416 1.21250 0.99660 0.92630 1.02887 1.21122 0.91802 0.98536 0.85870 1.18537 0.98769 0.84407 0.98003 1.20936 1.48669 0.92440 0.93636 0.92329 1.25000 0.95037 0.97432 0.96635 1.69938 1.48915 1.08084 1.26062 0.86531 0.79209 0.78383 0.83225 1.20018 1.21101 1.20034 1.21241 0.98288 0.94638 1.02221 1.20771 0.96641 0.93864 0.93182 0.91715 0.92006 0.92145 0.88280 0.87751 0.74991 0.85276 0.85337 0.94703 0.94714 0.92561 0.85325 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 10.19 37.16 0.38 -0.47 16 2 C -0.16 -1.24 6.34 -90.58 -0.57 -1.82 16 3 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.18 -1.44 10.11 -26.69 -0.27 -1.71 16 5 C 0.09 0.84 6.18 -67.93 -0.42 0.42 16 6 H 0.14 1.27 8.11 -51.93 -0.42 0.85 16 7 N -1.09 -10.93 6.04 -4.89 -0.03 -10.96 16 8 S 2.70 37.04 5.72 -107.50 -0.61 36.43 16 9 O -0.96 -15.42 17.04 -57.17 -0.97 -16.39 16 10 O -0.96 -15.45 17.28 -57.17 -0.99 -16.44 16 11 C -0.70 -10.94 5.95 -39.58 -0.24 -11.18 16 12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 13 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 14 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 15 C 0.04 0.96 5.11 -29.03 -0.15 0.82 16 16 C -0.52 -14.05 9.09 -34.44 -0.31 -14.36 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.14 -2.65 9.70 -39.58 -0.38 -3.04 16 25 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 31 H 0.42 3.24 8.96 -34.47 -0.31 2.93 16 32 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 33 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 38 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -32.61 341.32 -10.75 -43.36 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.28 Total: 1.83 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -3.73 Total: -34.30 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.71 Total: -35.70 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.96 Total: -32.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 37.04 SS G_CDS: -0.61 Total: 36.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.61 -10.75 -43.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885176764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds