Wall clock time and date at job start Tue Mar 31 2020 07:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.56708 * 2 1 4 4 C 1.53080 * 117.49198 * 214.28873 * 2 1 3 5 5 C 1.52996 * 59.98392 * 252.51441 * 4 2 1 6 6 H 1.09000 * 117.49811 * 107.50112 * 5 4 2 7 7 N 1.46501 * 117.49746 * 252.49857 * 5 4 2 8 8 S 1.65601 * 119.99590 * 213.74736 * 7 5 4 9 9 O 1.42100 * 106.40802 * 311.46314 * 8 7 5 10 10 O 1.42111 * 106.40173 * 178.54210 * 8 7 5 11 11 C 1.76199 * 107.21945 * 65.00302 * 8 7 5 12 12 C 1.38237 * 119.99918 * 89.99517 * 11 8 7 13 13 C 1.38235 * 120.00123 * 179.97438 * 12 11 8 14 14 C 1.38243 * 119.99602 * 359.96176 * 13 12 11 15 15 C 1.50706 * 119.99586 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47001 * 89.99822 * 15 14 13 17 17 H 1.08005 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00081 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46844 * 60.00490 * 20 18 16 22 22 H 1.48496 * 109.47153 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47045 * 300.00555 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.27275 * 14 13 12 25 25 C 1.38234 * 120.00034 * 269.97553 * 11 8 7 26 26 H 1.08997 * 109.46966 * 274.30799 * 1 2 3 27 27 H 1.08996 * 109.47077 * 34.31008 * 1 2 3 28 28 H 1.09000 * 109.47518 * 154.30827 * 1 2 3 29 29 H 1.09002 * 117.50834 * 145.03308 * 4 2 1 30 30 H 1.08995 * 117.51299 * 0.02562 * 4 2 1 31 31 H 0.96995 * 120.00254 * 33.75073 * 7 5 4 32 32 H 1.08000 * 120.00539 * 359.97438 * 12 11 8 33 33 H 1.07999 * 120.00181 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.46646 * 209.99280 * 15 14 13 35 35 H 1.09000 * 109.47248 * 329.99998 * 15 14 13 36 36 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 37 37 H 1.08004 * 119.99934 * 179.72684 * 24 14 13 38 38 H 1.07999 * 119.99990 * 359.97438 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1210 0.7649 6 1 1.6111 -1.8583 1.2686 7 7 3.4932 -0.7906 1.4413 8 16 3.8731 -1.5138 2.8819 9 8 2.7215 -1.3963 3.7060 10 8 5.1506 -1.0162 3.2560 11 6 4.0830 -3.2338 2.5627 12 6 5.3288 -3.7266 2.2220 13 6 5.4937 -5.0761 1.9721 14 6 4.4128 -5.9331 2.0637 15 6 4.5924 -7.4043 1.7907 16 6 4.9427 -8.1140 3.0732 17 1 5.0273 -7.5555 3.9937 18 6 5.1553 -9.4763 3.0713 19 7 5.0528 -10.1562 1.9502 20 14 5.5902 -10.3560 4.6607 21 1 4.4968 -10.1649 5.6473 22 1 5.7671 -11.8056 4.3917 23 1 6.8529 -9.7966 5.2066 24 6 3.1660 -5.4396 2.3997 25 6 3.0020 -4.0906 2.6535 26 1 -0.3633 0.0772 1.0247 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3634 -0.9260 -0.4455 29 1 3.1718 -0.8766 -1.2683 30 1 1.6115 -1.8594 -1.2684 31 1 4.1028 -0.1484 1.0455 32 1 6.1734 -3.0572 2.1509 33 1 6.4669 -5.4610 1.7054 34 1 3.6659 -7.8150 1.3895 35 1 5.3954 -7.5442 1.0670 36 1 5.2027 -11.1146 1.9488 37 1 2.3207 -6.1084 2.4670 38 1 2.0289 -3.7058 2.9204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885176764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:19 Heat of formation + Delta-G solvation = -61.819927 kcal Electronic energy + Delta-G solvation = -21020.202178 eV Core-core repulsion = 17760.829229 eV Total energy + Delta-G solvation = -3259.372949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23609 -39.13090 -38.31158 -37.00033 -35.59985 -33.73135 -33.31640 -31.96521 -29.25016 -28.88240 -25.59670 -23.79090 -23.04795 -22.48763 -21.59019 -20.61133 -19.08417 -18.59423 -18.36059 -17.59526 -16.85885 -16.59127 -15.99471 -15.76556 -15.29475 -15.07105 -14.62767 -14.51545 -14.41003 -13.94613 -13.83494 -13.42958 -13.41486 -13.27007 -13.20553 -13.17528 -12.92305 -12.73682 -12.65672 -12.64084 -12.19477 -12.07520 -12.04047 -11.69738 -11.40712 -10.91993 -10.65269 -10.00155 -9.96364 -9.86866 -8.27334 -6.40279 -0.66472 -0.06673 0.39719 1.38599 1.40141 1.48647 1.94561 2.34512 2.53963 2.79165 2.93398 3.05292 3.29913 3.80143 3.90246 3.91862 3.97551 4.04663 4.10120 4.16175 4.47276 4.48096 4.51068 4.81348 4.90629 4.94139 5.00960 5.02459 5.10026 5.24471 5.25680 5.26406 5.29152 5.33300 5.49793 5.66650 5.86141 5.92167 6.03971 6.09606 6.71379 7.28875 8.82551 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.003583 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.495339 B = 7812.336234 C = 8344.323761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.152 4.152 3 H 0.116 0.884 4 C -0.178 4.178 5 C 0.061 3.939 6 H 0.135 0.865 7 N -1.075 6.075 8 S 2.729 3.271 9 O -0.980 6.980 10 O -0.985 6.985 11 C -0.699 4.699 12 C -0.019 4.019 13 C -0.156 4.156 14 C -0.003 4.003 15 C 0.048 3.952 16 C -0.536 4.536 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.269 1.269 24 C -0.154 4.154 25 C -0.019 4.019 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.429 0.571 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.131 0.869 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 20.560 -5.555 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.173 4.173 3 H 0.134 0.866 4 C -0.217 4.217 5 C -0.046 4.046 6 H 0.153 0.847 7 N -0.834 5.834 8 S 2.820 3.180 9 O -0.970 6.970 10 O -0.975 6.975 11 C -0.786 4.786 12 C -0.038 4.038 13 C -0.174 4.174 14 C -0.003 4.003 15 C 0.012 3.988 16 C -0.574 4.574 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.173 4.173 25 C -0.038 4.038 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.266 0.734 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.610 20.669 -4.719 22.208 hybrid contribution 0.730 -1.487 0.004 1.657 sum -5.880 19.182 -4.715 20.610 Atomic orbital electron populations 1.21438 0.91689 1.03013 1.02416 1.22925 0.96324 0.95178 1.02822 0.86561 1.23698 1.03390 1.01581 0.93081 1.21696 0.86824 1.02984 0.93132 0.84726 1.54794 1.29000 1.56928 1.42640 1.00669 0.72196 0.72644 0.72529 1.93545 1.51654 1.86239 1.65591 1.93546 1.42653 1.79646 1.81637 1.30757 1.00815 1.25614 1.21437 1.21017 0.95775 0.95591 0.91423 1.21303 0.99171 0.93597 1.03375 1.20823 0.93731 0.96601 0.89177 1.18261 0.96730 0.87342 0.96511 1.21274 1.48541 0.93078 0.94468 0.92796 1.25860 0.94855 0.98253 0.99921 1.70048 1.49862 1.08431 1.28113 0.85516 0.79124 0.77334 0.79217 1.19324 1.20377 1.19416 1.21307 0.97502 0.95963 1.02488 1.21038 0.98115 0.92737 0.91950 0.92097 0.90828 0.91801 0.87533 0.87208 0.73415 0.82747 0.85319 0.96760 0.96894 0.92356 0.85124 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 10.19 71.98 0.73 -0.70 16 2 C -0.15 -1.92 6.34 -10.77 -0.07 -1.99 16 3 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.18 -2.31 10.11 30.62 0.31 -2.00 16 5 C 0.06 1.00 6.18 44.99 0.28 1.28 16 6 H 0.14 2.21 8.11 -2.39 -0.02 2.19 16 7 N -1.07 -18.72 6.04 -169.39 -1.02 -19.74 16 8 S 2.73 68.58 5.72 -56.49 -0.32 68.25 16 9 O -0.98 -29.21 17.04 -128.00 -2.18 -31.39 16 10 O -0.98 -29.22 17.28 -128.00 -2.21 -31.43 16 11 C -0.70 -20.51 5.95 22.27 0.13 -20.38 16 12 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 13 C -0.16 -5.80 9.70 22.27 0.22 -5.58 16 14 C 0.00 -0.13 5.07 -19.86 -0.10 -0.23 16 15 C 0.05 2.48 5.11 29.10 0.15 2.63 16 16 C -0.54 -29.84 9.09 25.60 0.23 -29.60 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.57 5.46 84.65 0.46 1.03 16 19 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 20 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C -0.15 -5.64 9.70 22.27 0.22 -5.43 16 25 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 7.90 -2.39 -0.02 0.65 16 29 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 1.32 8.05 -2.39 -0.02 1.30 16 31 H 0.43 5.41 8.96 -96.75 -0.87 4.55 16 32 H 0.15 3.98 7.62 -2.91 -0.02 3.96 16 33 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 35 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.16 3.85 7.62 -2.91 -0.02 3.83 16 Total: -1.00 -69.95 341.32 -0.25 -70.19 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.20 Total: 14.17 kcal Atomic # 6 Polarization: -64.72 SS G_CDS: 2.98 Total: -61.74 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -0.74 Total: -73.62 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -4.39 Total: -62.82 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 68.58 SS G_CDS: -0.32 Total: 68.25 kcal Total: -69.95 -0.25 -70.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885176764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.375 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds