Wall clock time and date at job start Tue Mar 31 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.30996 * 120.00161 * 2 1 4 4 C 1.50698 * 119.99988 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.46843 * 125.00296 * 4 3 2 6 6 S 1.65604 * 119.99844 * 165.00297 * 5 4 3 7 7 O 1.42095 * 106.40018 * 311.45546 * 6 5 4 8 8 O 1.42098 * 106.39919 * 178.53897 * 6 5 4 9 9 C 1.76201 * 107.21824 * 64.99985 * 6 5 4 10 10 C 1.38234 * 120.00103 * 90.00267 * 9 6 5 11 11 C 1.38238 * 119.99675 * 180.27958 * 10 9 6 12 12 C 1.38229 * 120.00124 * 359.45911 * 11 10 9 13 13 C 1.50699 * 120.00230 * 180.28369 * 12 11 10 14 14 C 1.50691 * 109.47261 * 270.27992 * 13 12 11 15 15 H 1.08000 * 120.00158 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00152 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47356 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47320 * 119.99435 * 18 16 14 21 21 H 1.48500 * 109.47351 * 239.99262 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 12 11 10 23 23 C 1.38234 * 119.99657 * 270.01898 * 9 6 5 24 24 H 1.08998 * 109.47326 * 59.99879 * 1 2 3 25 25 H 1.09003 * 109.47436 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47465 * 299.99899 * 1 2 3 27 27 H 1.08005 * 119.99903 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.99959 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47163 * 5.00774 * 4 3 2 30 30 H 1.08993 * 109.47529 * 244.99825 * 4 3 2 31 31 H 0.96997 * 119.99899 * 344.99870 * 5 4 3 32 32 H 1.08002 * 119.99744 * 359.97438 * 10 9 6 33 33 H 1.08004 * 119.99577 * 179.72816 * 11 10 9 34 34 H 1.09007 * 109.47085 * 30.27493 * 13 12 11 35 35 H 1.08998 * 109.47270 * 150.26989 * 13 12 11 36 36 H 0.97003 * 120.00412 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.00274 * 179.72697 * 22 12 11 38 38 H 1.07997 * 120.00460 * 359.97438 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6689 1.1344 0.0006 5 7 4.1577 1.9265 -1.1309 6 16 5.7398 2.4134 -1.1787 7 8 6.0238 2.9801 0.0930 8 8 5.9049 3.1215 -2.3996 9 6 6.7288 0.9609 -1.3084 10 6 7.0599 0.4589 -2.5531 11 6 7.8310 -0.6839 -2.6546 12 6 8.2803 -1.3184 -1.5117 13 6 9.1263 -2.5606 -1.6225 14 6 8.2344 -3.7750 -1.6494 15 1 7.1622 -3.6589 -1.5916 16 6 8.7872 -5.0343 -1.7467 17 7 10.0928 -5.1757 -1.8166 18 14 7.6817 -6.5397 -1.7794 19 1 6.2621 -6.1134 -1.6874 20 1 7.8945 -7.2828 -3.0473 21 1 8.0094 -7.4196 -0.6289 22 6 7.9489 -0.8166 -0.2670 23 6 7.1734 0.3232 -0.1653 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.0470 -0.9354 -0.0004 28 1 1.6220 2.0698 0.0004 29 1 4.0323 0.1106 -0.0888 30 1 4.0320 1.5689 0.9319 31 1 3.5546 2.1656 -1.8519 32 1 6.7120 0.9568 -3.4461 33 1 8.0859 -1.0786 -3.6271 34 1 9.7127 -2.5202 -2.5404 35 1 9.7969 -2.6211 -0.7653 36 1 10.4818 -6.0617 -1.8854 37 1 8.2963 -1.3148 0.6261 38 1 6.9149 0.7154 0.8072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885326131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:12 Heat of formation + Delta-G solvation = -50.702781 kcal Electronic energy + Delta-G solvation = -20813.352100 eV Core-core repulsion = 17554.461227 eV Total energy + Delta-G solvation = -3258.890873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.80978 -37.22993 -36.74336 -35.76525 -33.83132 -33.68511 -31.57229 -30.58275 -28.65195 -27.44501 -24.10788 -23.74229 -22.34296 -20.92534 -20.05662 -19.27570 -17.84767 -17.31182 -16.47920 -16.41863 -15.27978 -15.10471 -14.73127 -14.42293 -14.37975 -14.13439 -13.79855 -13.51405 -13.11412 -13.07571 -12.80899 -12.45221 -12.21336 -12.02471 -11.93374 -11.78583 -11.70347 -11.50524 -11.27271 -10.95199 -10.92206 -10.54616 -10.50233 -9.91973 -9.73191 -9.62787 -9.24523 -8.60283 -8.56308 -8.39141 -6.19502 -4.24756 0.49667 1.32459 1.78888 1.87316 3.16710 3.19951 3.28121 3.31794 3.76436 4.11935 4.34622 4.38513 4.58506 4.79116 5.03184 5.13361 5.15518 5.22477 5.23323 5.32195 5.37762 5.54440 5.64153 5.71549 5.74955 5.85953 5.90498 6.24255 6.32432 6.37061 6.47105 6.50558 6.82967 6.86359 6.90681 7.28437 7.42522 7.58138 7.75204 8.10811 8.80021 9.40108 10.90637 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.004300 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.240880 B = 6509.585586 C = 8109.113508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 C -0.175 4.175 4 C 0.146 3.854 5 N -1.117 6.117 6 S 2.699 3.301 7 O -0.966 6.966 8 O -0.967 6.967 9 C -0.704 4.704 10 C -0.022 4.022 11 C -0.146 4.146 12 C 0.027 3.973 13 C 0.038 3.962 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.145 4.145 23 C -0.026 4.026 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.417 0.583 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 11.572 2.750 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C -0.194 4.194 4 C 0.021 3.979 5 N -0.876 5.876 6 S 2.792 3.208 7 O -0.956 6.956 8 O -0.957 6.957 9 C -0.794 4.794 10 C -0.041 4.041 11 C -0.165 4.165 12 C 0.026 3.974 13 C 0.001 3.999 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.045 4.045 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.251 0.749 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.295 12.267 2.938 19.064 hybrid contribution -0.582 -1.695 -0.411 1.839 sum -14.876 10.572 2.527 18.424 Atomic orbital electron populations 1.20886 0.92912 1.02627 1.02066 1.23034 0.96424 0.98281 0.98214 1.22775 0.94673 0.98684 1.03309 1.20339 0.92841 0.95857 0.88899 1.55553 1.28855 1.71090 1.32069 1.01494 0.72205 0.73776 0.73311 1.93552 1.83831 1.75476 1.42695 1.93563 1.85234 1.70820 1.46121 1.30319 1.23506 1.25502 1.00044 1.20774 0.93957 0.94255 0.95128 1.21249 1.00046 0.95780 0.99388 1.21113 0.90398 0.93754 0.92107 1.18550 0.94192 0.88111 0.99016 1.20987 0.93000 0.89829 1.51660 0.92286 1.25008 0.95123 0.99168 0.94861 1.69955 1.09949 1.23434 1.49535 0.86434 0.80717 0.82498 0.77790 1.19653 1.20795 1.20793 1.21245 1.00406 0.96447 0.98341 1.20791 0.93780 0.93587 0.96350 0.91510 0.91847 0.91529 0.86807 0.86683 0.90980 0.89447 0.74918 0.85251 0.85348 0.94687 0.94677 0.92652 0.85336 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 10.17 36.00 0.37 -0.47 16 2 C -0.14 -1.13 9.87 -36.03 -0.36 -1.49 16 3 C -0.17 -1.46 9.29 -36.03 -0.33 -1.79 16 4 C 0.15 1.42 6.66 -5.19 -0.03 1.39 16 5 N -1.12 -11.57 5.99 -11.65 -0.07 -11.64 16 6 S 2.70 36.93 5.74 -107.50 -0.62 36.31 16 7 O -0.97 -15.28 16.75 -57.17 -0.96 -16.24 16 8 O -0.97 -15.36 17.28 -57.17 -0.99 -16.35 16 9 C -0.70 -10.98 5.95 -39.58 -0.24 -11.22 16 10 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 11 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 12 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 13 C 0.04 0.93 5.10 -29.04 -0.15 0.78 16 14 C -0.52 -13.76 9.09 -34.44 -0.31 -14.07 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16 23 C -0.03 -0.41 9.52 -39.58 -0.38 -0.79 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.11 0.95 7.84 -52.48 -0.41 0.53 16 28 H 0.12 0.84 8.05 -52.49 -0.42 0.42 16 29 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 30 H 0.09 0.83 7.75 -51.93 -0.40 0.43 16 31 H 0.42 3.49 8.64 -34.48 -0.30 3.19 16 32 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 33 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -32.24 343.09 -10.19 -42.42 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.23 Total: 2.23 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: -3.21 Total: -32.96 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.67 Total: -36.23 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.95 Total: -32.59 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 36.93 SS G_CDS: -0.62 Total: 36.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.24 -10.19 -42.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885326131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.280 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds