Wall clock time and date at job start Tue Mar 31 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.30996 * 120.00161 * 2 1 4 4 C 1.50698 * 119.99988 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.46843 * 125.00296 * 4 3 2 6 6 S 1.65604 * 119.99844 * 165.00297 * 5 4 3 7 7 O 1.42095 * 106.40018 * 311.45546 * 6 5 4 8 8 O 1.42098 * 106.39919 * 178.53897 * 6 5 4 9 9 C 1.76201 * 107.21824 * 64.99985 * 6 5 4 10 10 C 1.38234 * 120.00103 * 90.00267 * 9 6 5 11 11 C 1.38238 * 119.99675 * 180.27958 * 10 9 6 12 12 C 1.38229 * 120.00124 * 359.45911 * 11 10 9 13 13 C 1.50699 * 120.00230 * 180.28369 * 12 11 10 14 14 C 1.50691 * 109.47261 * 270.27992 * 13 12 11 15 15 H 1.08000 * 120.00158 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00152 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47356 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47320 * 119.99435 * 18 16 14 21 21 H 1.48500 * 109.47351 * 239.99262 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 12 11 10 23 23 C 1.38234 * 119.99657 * 270.01898 * 9 6 5 24 24 H 1.08998 * 109.47326 * 59.99879 * 1 2 3 25 25 H 1.09003 * 109.47436 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47465 * 299.99899 * 1 2 3 27 27 H 1.08005 * 119.99903 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.99959 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47163 * 5.00774 * 4 3 2 30 30 H 1.08993 * 109.47529 * 244.99825 * 4 3 2 31 31 H 0.96997 * 119.99899 * 344.99870 * 5 4 3 32 32 H 1.08002 * 119.99744 * 359.97438 * 10 9 6 33 33 H 1.08004 * 119.99577 * 179.72816 * 11 10 9 34 34 H 1.09007 * 109.47085 * 30.27493 * 13 12 11 35 35 H 1.08998 * 109.47270 * 150.26989 * 13 12 11 36 36 H 0.97003 * 120.00412 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.00274 * 179.72697 * 22 12 11 38 38 H 1.07997 * 120.00460 * 359.97438 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6689 1.1344 0.0006 5 7 4.1577 1.9265 -1.1309 6 16 5.7398 2.4134 -1.1787 7 8 6.0238 2.9801 0.0930 8 8 5.9049 3.1215 -2.3996 9 6 6.7288 0.9609 -1.3084 10 6 7.0599 0.4589 -2.5531 11 6 7.8310 -0.6839 -2.6546 12 6 8.2803 -1.3184 -1.5117 13 6 9.1263 -2.5606 -1.6225 14 6 8.2344 -3.7750 -1.6494 15 1 7.1622 -3.6589 -1.5916 16 6 8.7872 -5.0343 -1.7467 17 7 10.0928 -5.1757 -1.8166 18 14 7.6817 -6.5397 -1.7794 19 1 6.2621 -6.1134 -1.6874 20 1 7.8945 -7.2828 -3.0473 21 1 8.0094 -7.4196 -0.6289 22 6 7.9489 -0.8166 -0.2670 23 6 7.1734 0.3232 -0.1653 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.0470 -0.9354 -0.0004 28 1 1.6220 2.0698 0.0004 29 1 4.0323 0.1106 -0.0888 30 1 4.0320 1.5689 0.9319 31 1 3.5546 2.1656 -1.8519 32 1 6.7120 0.9568 -3.4461 33 1 8.0859 -1.0786 -3.6271 34 1 9.7127 -2.5202 -2.5404 35 1 9.7969 -2.6211 -0.7653 36 1 10.4818 -6.0617 -1.8854 37 1 8.2963 -1.3148 0.6261 38 1 6.9149 0.7154 0.8072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885326131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:12 Heat of formation + Delta-G solvation = -71.431289 kcal Electronic energy + Delta-G solvation = -20814.250956 eV Core-core repulsion = 17554.461227 eV Total energy + Delta-G solvation = -3259.789729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23375 -38.37948 -37.52342 -36.96983 -35.59522 -34.54002 -33.31600 -31.96016 -29.30519 -29.24621 -25.59390 -24.80272 -23.71556 -22.48045 -20.84985 -20.24172 -19.01393 -18.56837 -18.39108 -17.41724 -16.85131 -16.43630 -15.98639 -15.70003 -15.43878 -15.16504 -14.86293 -14.64192 -14.44604 -14.04112 -13.91779 -13.70313 -13.43388 -13.40986 -13.34829 -13.21911 -13.14963 -12.68805 -12.61139 -12.34051 -12.12402 -12.04159 -11.93986 -11.64218 -11.45802 -10.65917 -10.65400 -9.97788 -9.96239 -9.88118 -8.26384 -6.39594 -0.63069 -0.06014 0.39891 1.21870 1.38538 1.39599 1.52158 2.12595 2.35346 2.56558 2.84164 3.06537 3.32276 3.82951 3.89929 3.97779 4.14810 4.15829 4.35953 4.47364 4.48382 4.52707 4.68269 4.81538 4.86203 4.91008 4.92457 4.99806 5.10918 5.22533 5.24495 5.26241 5.33620 5.67433 5.77280 5.85462 5.86055 5.92458 6.09616 6.12820 6.72656 7.29754 8.84198 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.004300 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.240880 B = 6509.585586 C = 8109.113508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.142 4.142 3 C -0.178 4.178 4 C 0.138 3.862 5 N -1.102 6.102 6 S 2.729 3.271 7 O -0.981 6.981 8 O -0.985 6.985 9 C -0.701 4.701 10 C -0.019 4.019 11 C -0.156 4.156 12 C -0.003 4.003 13 C 0.046 3.954 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.276 1.276 22 C -0.155 4.155 23 C -0.020 4.020 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.429 0.571 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.267 0.733 37 H 0.130 0.870 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.507 12.419 3.045 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C -0.198 4.198 4 C 0.013 3.987 5 N -0.864 5.864 6 S 2.819 3.181 7 O -0.971 6.971 8 O -0.975 6.975 9 C -0.788 4.788 10 C -0.038 4.038 11 C -0.175 4.175 12 C -0.004 4.004 13 C 0.009 3.991 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.202 1.202 22 C -0.173 4.173 23 C -0.039 4.039 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.266 0.734 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.148 0.852 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.934 13.109 3.222 21.656 hybrid contribution 0.178 -1.862 -0.480 1.931 sum -16.756 11.247 2.742 20.366 Atomic orbital electron populations 1.20916 0.91727 1.03096 1.02762 1.23191 0.97409 0.98026 0.97543 1.22755 0.93716 0.99359 1.03943 1.20514 0.94010 0.95604 0.88619 1.55245 1.27442 1.70923 1.32830 1.00666 0.72411 0.72662 0.72353 1.93534 1.84559 1.75563 1.43483 1.93538 1.85884 1.71116 1.46954 1.30802 1.22805 1.25588 0.99594 1.21028 0.92928 0.93293 0.96565 1.21301 1.00686 0.96730 0.98784 1.20816 0.92102 0.93444 0.94007 1.18280 0.94079 0.90034 0.96661 1.21312 0.93225 0.91013 1.51248 0.92367 1.25907 0.96474 1.02369 0.94368 1.70074 1.11779 1.24298 1.50604 0.85370 0.79039 0.78538 0.77951 1.18731 1.20260 1.20182 1.21310 1.01026 0.97472 0.97536 1.21060 0.92479 0.92429 0.97916 0.90835 0.91570 0.90730 0.87391 0.85386 0.91152 0.89028 0.73444 0.82712 0.85343 0.97121 0.97011 0.92432 0.85162 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 10.17 71.23 0.72 -0.64 16 2 C -0.14 -1.98 9.87 25.65 0.25 -1.73 16 3 C -0.18 -2.50 9.29 25.65 0.24 -2.26 16 4 C 0.14 2.32 6.66 85.63 0.57 2.89 16 5 N -1.10 -19.68 5.99 -190.78 -1.14 -20.82 16 6 S 2.73 67.61 5.74 -56.49 -0.32 67.29 16 7 O -0.98 -28.47 16.75 -128.00 -2.14 -30.61 16 8 O -0.98 -28.74 17.28 -128.00 -2.21 -30.95 16 9 C -0.70 -20.48 5.95 22.27 0.13 -20.34 16 10 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 11 C -0.16 -5.83 9.70 22.27 0.22 -5.61 16 12 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 13 C 0.05 2.38 5.10 29.10 0.15 2.53 16 14 C -0.53 -28.98 9.09 25.60 0.23 -28.74 16 15 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 16 C 0.01 0.42 5.46 84.66 0.46 0.88 16 17 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 18 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 23 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 1.61 7.84 -2.91 -0.02 1.59 16 28 H 0.13 1.47 8.05 -2.91 -0.02 1.44 16 29 H 0.07 1.23 7.79 -2.39 -0.02 1.21 16 30 H 0.09 1.49 7.75 -2.39 -0.02 1.48 16 31 H 0.43 5.84 8.64 -96.74 -0.84 5.01 16 32 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 33 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.01 0.58 8.09 -2.38 -0.02 0.56 16 35 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 36 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.16 3.87 7.62 -2.91 -0.02 3.85 16 Total: -1.00 -69.11 343.09 0.23 -68.88 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.22 Total: 15.05 kcal Atomic # 6 Polarization: -63.03 SS G_CDS: 3.52 Total: -59.51 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -0.86 Total: -74.77 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -4.36 Total: -61.56 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 67.61 SS G_CDS: -0.32 Total: 67.29 kcal Total: -69.11 0.23 -68.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885326131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.547 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds