Wall clock time and date at job start Tue Mar 31 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.40061 * 125.87082 * 59.69610 * 4 2 1 6 6 C 1.30252 * 109.69678 * 179.80580 * 5 4 2 7 7 C 1.41177 * 108.46528 * 0.44737 * 6 5 4 8 8 C 1.36312 * 125.88044 * 240.00119 * 4 2 1 9 9 N 1.33209 * 134.59586 * 359.96449 * 8 4 2 10 10 C 1.31636 * 120.67286 * 180.02562 * 9 8 4 11 11 Cl 1.73592 * 118.69587 * 180.02562 * 10 9 8 12 12 N 1.32254 * 122.60617 * 0.02562 * 10 9 8 13 13 C 1.32836 * 121.17969 * 359.97438 * 12 10 9 14 14 N 1.38106 * 120.80035 * 180.02562 * 13 12 10 15 15 C 1.46501 * 119.99827 * 359.97391 * 14 13 12 16 16 C 1.50698 * 109.47086 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00070 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46948 * 119.99853 * 20 18 16 23 23 H 1.48498 * 109.47120 * 240.00033 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.07996 * 125.76761 * 180.13456 * 6 5 4 32 32 H 0.96998 * 120.00362 * 179.97438 * 14 13 12 33 33 H 1.09003 * 109.47329 * 300.00209 * 15 14 13 34 34 H 1.09003 * 109.47059 * 60.00319 * 15 14 13 35 35 H 0.97001 * 119.99903 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7520 -0.3244 -2.5215 6 6 2.3449 -1.1525 -3.3334 7 6 3.0287 -2.1195 -2.5650 8 6 2.8053 -1.8036 -1.2107 9 7 3.3515 -2.5751 -0.2722 10 6 4.0875 -3.6154 -0.6027 11 17 4.7740 -4.5862 0.6621 12 7 4.3245 -3.9501 -1.8600 13 6 3.8234 -3.2425 -2.8663 14 7 4.0755 -3.5995 -4.1764 15 6 4.9049 -4.7709 -4.4697 16 6 5.0249 -4.9404 -5.9623 17 1 4.5329 -4.2448 -6.6260 18 6 5.7628 -5.9834 -6.4806 19 7 6.3623 -6.8301 -5.6723 20 14 5.9122 -6.1931 -8.3308 21 1 5.1516 -5.1160 -9.0140 22 1 7.3421 -6.1147 -8.7240 23 1 5.3620 -7.5149 -8.7251 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 2.3142 -1.1098 -4.4121 32 1 3.7034 -3.0746 -4.9023 33 1 5.8966 -4.6309 -4.0394 34 1 4.4439 -5.6596 -4.0386 35 1 6.8811 -7.5642 -6.0369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893545680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:00 Heat of formation + Delta-G solvation = 102.149011 kcal Electronic energy + Delta-G solvation = -20828.059480 eV Core-core repulsion = 17502.505459 eV Total energy + Delta-G solvation = -3325.554021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.76717 -38.87505 -36.75888 -35.86972 -35.54167 -33.12411 -31.93601 -30.12376 -29.81074 -27.47247 -26.99527 -24.02036 -23.59033 -22.72896 -21.91095 -19.86073 -18.47970 -17.42551 -17.02592 -16.05085 -15.81917 -15.46670 -14.78644 -14.74957 -14.48851 -14.26470 -13.90379 -13.25300 -13.06166 -12.97711 -12.42171 -12.39828 -12.17705 -11.69966 -11.62918 -11.30977 -11.20490 -11.08997 -11.08577 -10.98383 -10.81998 -10.44079 -10.33010 -9.48881 -9.26048 -8.88350 -8.81357 -8.60844 -7.46202 -6.25837 -4.33862 0.94476 1.55002 1.72867 2.31177 2.56441 3.18876 3.26368 3.28789 3.67752 4.07773 4.17022 4.27180 4.63729 4.69421 4.76188 4.83171 4.91979 5.11084 5.16691 5.22014 5.33020 5.50508 5.53782 5.59838 5.88914 5.95330 6.03359 6.42551 6.70459 7.00472 7.21671 7.36869 7.42948 7.55757 7.79295 7.83302 8.18337 8.51855 8.76637 9.32456 10.83880 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004132 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.235945 B = 6774.767793 C = 8151.945010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.164 3.836 3 C -0.159 4.159 4 N -0.374 5.374 5 N -0.264 5.264 6 C 0.113 3.887 7 C -0.346 4.346 8 C 0.383 3.617 9 N -0.588 5.588 10 C 0.461 3.539 11 Cl 0.018 6.982 12 N -0.588 5.588 13 C 0.526 3.474 14 N -0.657 5.657 15 C 0.249 3.751 16 C -0.550 4.550 17 H 0.064 0.936 18 C 0.067 3.933 19 N -0.881 5.881 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.408 0.592 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 12.185 10.041 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 C -0.217 4.217 4 N -0.165 5.165 5 N -0.078 5.078 6 C -0.083 4.083 7 C -0.364 4.364 8 C 0.137 3.863 9 N -0.322 5.322 10 C 0.161 3.839 11 Cl 0.046 6.954 12 N -0.322 5.322 13 C 0.271 3.729 14 N -0.280 5.280 15 C 0.129 3.871 16 C -0.588 4.588 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.210 0.790 32 H 0.244 0.756 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.769 12.394 10.956 18.723 hybrid contribution 0.304 -0.428 -1.743 1.820 sum -8.466 11.965 9.214 17.313 Atomic orbital electron populations 1.22132 0.93564 1.02908 1.03142 1.21298 0.95159 0.93568 0.83740 1.22129 1.01853 0.94618 1.03137 1.48510 1.41709 1.21177 1.05086 1.76866 1.22259 1.22596 0.86071 1.23561 0.93804 0.90995 0.99948 1.19568 1.15959 1.05245 0.95645 1.18473 0.90487 0.88256 0.89071 1.66687 1.19798 1.09315 1.36443 1.22091 0.88171 0.86842 0.86780 1.98407 1.81777 1.67583 1.47610 1.67530 1.32115 1.34702 0.97805 1.17934 0.83682 0.84401 0.86930 1.45602 1.50053 1.31132 1.01193 1.19386 0.90042 0.81425 0.96272 1.21207 1.33642 1.13306 0.90687 0.91743 1.24911 0.94835 0.95221 0.98755 1.69973 1.31741 1.15189 1.34856 0.86353 0.78030 0.78218 0.84280 1.19598 1.20728 1.20724 0.91207 0.90777 0.92149 0.87496 0.90779 0.92144 0.91212 0.79027 0.75585 0.94523 0.94518 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.44 37.16 0.35 -1.12 16 2 C 0.16 1.81 3.69 -67.94 -0.25 1.56 16 3 C -0.16 -1.47 9.45 37.15 0.35 -1.12 16 4 N -0.37 -5.45 3.31 -53.98 -0.18 -5.63 16 5 N -0.26 -3.78 12.29 30.80 0.38 -3.40 16 6 C 0.11 1.58 11.87 -17.11 -0.20 1.38 16 7 C -0.35 -5.90 6.14 -106.81 -0.66 -6.56 16 8 C 0.38 6.56 8.00 -156.23 -1.25 5.31 16 9 N -0.59 -10.49 10.43 -11.03 -0.11 -10.61 16 10 C 0.46 8.60 8.16 -91.89 -0.75 7.85 16 11 Cl 0.02 0.29 29.25 -51.86 -1.52 -1.22 16 12 N -0.59 -12.11 9.65 -10.69 -0.10 -12.22 16 13 C 0.53 10.17 7.55 -154.87 -1.17 9.00 16 14 N -0.66 -12.89 5.67 -61.26 -0.35 -13.24 16 15 C 0.25 6.06 5.48 -5.19 -0.03 6.04 16 16 C -0.55 -14.05 9.28 -34.44 -0.32 -14.37 16 17 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -24.74 13.29 55.43 0.74 -24.01 16 20 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.41 6.84 8.19 -40.82 -0.33 6.51 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -29.61 324.62 -9.39 -38.99 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.09 Total: 1.72 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -4.02 Total: 9.66 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: 0.37 Total: -69.10 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.61 -9.39 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893545680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.143 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds