Wall clock time and date at job start Tue Mar 31 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.40061 * 125.87082 * 59.69610 * 4 2 1 6 6 C 1.30252 * 109.69678 * 179.80580 * 5 4 2 7 7 C 1.41177 * 108.46528 * 0.44737 * 6 5 4 8 8 C 1.36312 * 125.88044 * 240.00119 * 4 2 1 9 9 N 1.33209 * 134.59586 * 359.96449 * 8 4 2 10 10 C 1.31636 * 120.67286 * 180.02562 * 9 8 4 11 11 Cl 1.73592 * 118.69587 * 180.02562 * 10 9 8 12 12 N 1.32254 * 122.60617 * 0.02562 * 10 9 8 13 13 C 1.32836 * 121.17969 * 359.97438 * 12 10 9 14 14 N 1.38106 * 120.80035 * 180.02562 * 13 12 10 15 15 C 1.46501 * 119.99827 * 359.97391 * 14 13 12 16 16 C 1.50698 * 109.47086 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00070 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46948 * 119.99853 * 20 18 16 23 23 H 1.48498 * 109.47120 * 240.00033 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.07996 * 125.76761 * 180.13456 * 6 5 4 32 32 H 0.96998 * 120.00362 * 179.97438 * 14 13 12 33 33 H 1.09003 * 109.47329 * 300.00209 * 15 14 13 34 34 H 1.09003 * 109.47059 * 60.00319 * 15 14 13 35 35 H 0.97001 * 119.99903 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7520 -0.3244 -2.5215 6 6 2.3449 -1.1525 -3.3334 7 6 3.0287 -2.1195 -2.5650 8 6 2.8053 -1.8036 -1.2107 9 7 3.3515 -2.5751 -0.2722 10 6 4.0875 -3.6154 -0.6027 11 17 4.7740 -4.5862 0.6621 12 7 4.3245 -3.9501 -1.8600 13 6 3.8234 -3.2425 -2.8663 14 7 4.0755 -3.5995 -4.1764 15 6 4.9049 -4.7709 -4.4697 16 6 5.0249 -4.9404 -5.9623 17 1 4.5329 -4.2448 -6.6260 18 6 5.7628 -5.9834 -6.4806 19 7 6.3623 -6.8301 -5.6723 20 14 5.9122 -6.1931 -8.3308 21 1 5.1516 -5.1160 -9.0140 22 1 7.3421 -6.1147 -8.7240 23 1 5.3620 -7.5149 -8.7251 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 2.3142 -1.1098 -4.4121 32 1 3.7034 -3.0746 -4.9023 33 1 5.8966 -4.6309 -4.0394 34 1 4.4439 -5.6596 -4.0386 35 1 6.8811 -7.5642 -6.0369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893545680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:00 Heat of formation + Delta-G solvation = 84.776322 kcal Electronic energy + Delta-G solvation = -20828.812816 eV Core-core repulsion = 17502.505459 eV Total energy + Delta-G solvation = -3326.307357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.06387 -40.21092 -38.16828 -37.35344 -36.54107 -34.95662 -33.50457 -31.40361 -31.14337 -28.78963 -28.20605 -25.38462 -25.25618 -23.79758 -23.54381 -21.12747 -19.68966 -18.90232 -18.67262 -17.51955 -17.13139 -16.95193 -16.34467 -16.25281 -15.54465 -15.43136 -15.14114 -14.73930 -14.70896 -14.10387 -13.92787 -13.20715 -13.14740 -12.99870 -12.87255 -12.79617 -12.64461 -12.49490 -12.38633 -12.28109 -12.22035 -12.11326 -11.66166 -11.41427 -10.83456 -10.49766 -10.35016 -9.98389 -8.99180 -8.26274 -6.41603 -0.43705 0.20014 0.31626 1.15964 1.35805 1.46263 1.46686 1.59325 2.14565 2.43923 2.65014 3.00341 3.09790 3.37033 3.49645 3.62733 3.94197 3.95196 4.02402 4.16296 4.53317 4.68428 4.72827 4.80406 4.86445 5.05457 5.16625 5.21400 5.31344 5.33674 5.45170 5.51869 5.81491 5.87637 6.14621 6.32780 6.59481 6.75855 7.14057 7.31340 8.85211 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004132 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.235945 B = 6774.767793 C = 8151.945010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 C -0.151 4.151 4 N -0.368 5.368 5 N -0.258 5.258 6 C 0.118 3.882 7 C -0.347 4.347 8 C 0.361 3.639 9 N -0.582 5.582 10 C 0.447 3.553 11 Cl 0.036 6.964 12 N -0.622 5.622 13 C 0.518 3.482 14 N -0.657 5.657 15 C 0.273 3.727 16 C -0.558 4.558 17 H 0.083 0.917 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.978 3.022 21 H -0.254 1.254 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.230 0.770 32 H 0.422 0.578 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 14.247 9.366 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 C -0.209 4.209 4 N -0.158 5.158 5 N -0.072 5.072 6 C -0.077 4.077 7 C -0.366 4.366 8 C 0.114 3.886 9 N -0.315 5.315 10 C 0.147 3.853 11 Cl 0.063 6.937 12 N -0.357 5.357 13 C 0.264 3.736 14 N -0.283 5.283 15 C 0.151 3.849 16 C -0.596 4.596 17 H 0.101 0.899 18 C -0.190 4.190 19 N -0.563 5.563 20 Si 0.802 3.198 21 H -0.178 1.178 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.261 0.739 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.279 14.528 10.327 20.576 hybrid contribution 0.688 -0.971 -1.360 1.807 sum -9.591 13.557 8.967 18.873 Atomic orbital electron populations 1.22093 0.91838 1.02439 1.04529 1.21720 0.96523 0.94329 0.82387 1.22090 1.00931 0.93345 1.04525 1.48959 1.40511 1.20190 1.06102 1.76873 1.21877 1.22406 0.86069 1.24130 0.92530 0.89510 1.01551 1.19695 1.15600 1.04907 0.96373 1.18785 0.91363 0.89247 0.89194 1.66749 1.19234 1.08942 1.36604 1.22313 0.88701 0.87474 0.86780 1.98401 1.81526 1.67175 1.46553 1.67478 1.33299 1.36014 0.98924 1.18075 0.84060 0.85067 0.86431 1.45133 1.50662 1.30550 1.01988 1.18733 0.88637 0.81904 0.95612 1.21621 1.33224 1.13443 0.91315 0.89908 1.25906 0.94441 0.94910 1.03734 1.70119 1.32884 1.16040 1.37211 0.85213 0.77968 0.78419 0.78245 1.17788 1.20698 1.20681 0.91510 0.87665 0.93500 0.87620 0.87668 0.93487 0.91511 0.75350 0.73907 0.98042 0.98036 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.44 71.98 0.68 -1.72 16 2 C 0.15 3.01 3.69 44.99 0.17 3.18 16 3 C -0.15 -2.40 9.45 71.98 0.68 -1.72 16 4 N -0.37 -10.12 3.31 -324.70 -1.08 -11.20 16 5 N -0.26 -6.83 12.29 -56.46 -0.69 -7.52 16 6 C 0.12 3.06 11.87 85.65 1.02 4.08 16 7 C -0.35 -11.60 6.14 -21.28 -0.13 -11.73 16 8 C 0.36 12.11 8.00 134.14 1.07 13.19 16 9 N -0.58 -20.72 10.43 -188.80 -1.97 -22.69 16 10 C 0.45 16.99 8.16 180.79 1.47 18.46 16 11 Cl 0.04 1.15 29.25 -2.72 -0.08 1.07 16 12 N -0.62 -26.50 9.65 -187.73 -1.81 -28.31 16 13 C 0.52 20.28 7.55 133.65 1.01 21.29 16 14 N -0.66 -26.07 5.67 -347.73 -1.97 -28.04 16 15 C 0.27 13.81 5.48 85.63 0.47 14.28 16 16 C -0.56 -28.59 9.28 25.60 0.24 -28.35 16 17 H 0.08 3.84 7.60 -2.91 -0.02 3.82 16 18 C 0.01 0.55 5.46 84.65 0.46 1.02 16 19 N -0.92 -53.27 13.29 21.45 0.28 -52.99 16 20 Si 0.98 40.88 29.54 68.60 2.03 42.91 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.11 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.23 3.95 8.06 -2.91 -0.02 3.92 16 32 H 0.42 13.79 8.19 -92.71 -0.76 13.03 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -65.34 324.62 2.22 -63.12 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.37 Total: 11.68 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 7.14 Total: 31.96 kcal Atomic # 7 Polarization: -143.50 SS G_CDS: -7.24 Total: -150.74 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -0.08 Total: 1.07 kcal Total: -65.34 2.22 -63.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893545680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.894 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds