Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.50698 * 109.47012 * 240.00075 * 2 1 3 5 5 H 1.08006 * 120.00027 * 241.35413 * 4 2 1 6 6 C 1.37870 * 120.00294 * 61.34555 * 4 2 1 7 7 N 1.31510 * 120.00632 * 193.97857 * 6 4 2 8 8 Si 1.86810 * 119.99762 * 13.98207 * 6 4 2 9 9 H 1.48490 * 109.46987 * 84.54398 * 8 6 4 10 10 H 1.48503 * 109.46841 * 204.54877 * 8 6 4 11 11 H 1.48502 * 109.46846 * 324.54499 * 8 6 4 12 12 C 1.53000 * 109.46911 * 120.00062 * 2 1 3 13 13 N 1.46500 * 109.47505 * 299.99912 * 12 2 1 14 14 C 1.37260 * 120.00156 * 180.02562 * 13 12 2 15 15 N 1.33535 * 120.40691 * 0.02562 * 14 13 12 16 16 C 1.31023 * 121.94745 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 118.84411 * 179.97438 * 16 15 14 18 18 N 1.34489 * 122.31487 * 0.02562 * 16 15 14 19 19 H 0.97005 * 120.12923 * 180.02562 * 18 16 15 20 20 C 1.37680 * 119.74386 * 359.95833 * 18 16 15 21 21 N 1.32458 * 135.08016 * 180.02562 * 20 18 16 22 22 C 1.32815 * 108.71392 * 179.97438 * 21 20 18 23 23 N 1.31598 * 110.16249 * 0.02562 * 22 21 20 24 24 C 1.34324 * 108.19475 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46820 * 309.36789 * 1 2 3 26 26 H 1.08995 * 109.46857 * 69.36443 * 1 2 3 27 27 H 1.08995 * 109.47400 * 189.37118 * 1 2 3 28 28 H 1.09001 * 109.47426 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47290 * 300.00209 * 3 2 1 30 30 H 1.09003 * 109.47221 * 60.00204 * 3 2 1 31 31 H 0.96998 * 120.00783 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47000 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47400 * 60.00173 * 12 2 1 34 34 H 0.96993 * 119.99622 * 359.97438 * 13 12 2 35 35 H 1.08007 * 124.91280 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9157 -0.9725 -3.5459 8 14 1.0277 1.5007 -2.6684 9 1 2.1418 2.4816 -2.7083 10 1 0.2470 1.5866 -3.9287 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4455 14 6 1.8837 -0.4994 3.6921 15 7 2.6517 -1.5838 3.8240 16 6 2.9874 -2.0569 4.9989 17 17 3.9892 -3.4726 5.0766 18 7 2.5824 -1.4849 6.1467 19 1 2.8503 -1.8617 6.9995 20 6 1.7873 -0.3616 6.1067 21 7 1.2303 0.4260 7.0144 22 6 0.5532 1.3831 6.3903 23 7 0.6568 1.2357 5.0867 24 6 1.4200 0.1570 4.8459 25 1 -0.3633 0.6519 0.7945 26 1 -0.3633 0.3622 -0.9617 27 1 -0.3634 -1.0139 0.1673 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6979 -0.6298 -4.4268 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 0.9944 0.7581 2.3565 35 1 -0.0025 2.1682 6.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894161152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = 123.211715 kcal Electronic energy + Delta-G solvation = -21289.923829 eV Core-core repulsion = 17965.283156 eV Total energy + Delta-G solvation = -3324.640673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32012 -39.56364 -38.30505 -37.45373 -35.76062 -33.28438 -31.73506 -30.73529 -29.45871 -26.53867 -26.19932 -25.15093 -24.46005 -23.04587 -21.44227 -19.69037 -18.62172 -18.39290 -17.47446 -16.58789 -16.38091 -16.18069 -15.36350 -14.94879 -14.48696 -14.36254 -13.98052 -13.75785 -13.09164 -12.87379 -12.64349 -12.32823 -12.28037 -12.13441 -12.09942 -11.38214 -10.94789 -10.62357 -10.53365 -10.30547 -10.26211 -10.19196 -9.51621 -9.34047 -9.26260 -8.95283 -8.80718 -8.57613 -7.75985 -6.25266 -4.24158 -0.00287 0.33431 1.44461 2.27021 2.91207 3.18449 3.26414 3.33667 3.37570 3.65295 4.00387 4.20210 4.27050 4.65587 4.92873 5.05170 5.34910 5.51951 5.79574 5.90141 5.97566 6.19226 6.25026 6.33931 6.40031 6.42777 6.55764 6.66197 6.78483 6.89924 7.03510 7.13483 7.24917 7.25699 7.52708 7.62907 8.30869 8.46592 8.77798 9.38063 10.87232 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.004539 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.158854 B = 6167.121952 C = 7418.159217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.028 3.972 3 C -0.153 4.153 4 C -0.516 4.516 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.882 3.118 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.249 1.249 12 C 0.127 3.873 13 N -0.635 5.635 14 C 0.542 3.458 15 N -0.542 5.542 16 C 0.468 3.532 17 Cl 0.058 6.942 18 N -0.535 5.535 19 H 0.424 0.576 20 C 0.217 3.783 21 N -0.539 5.539 22 C 0.187 3.813 23 N -0.497 5.497 24 C -0.119 4.119 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.428 0.572 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -2.836 17.430 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 C -0.210 4.210 4 C -0.554 4.554 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.523 5.523 8 Si 0.714 3.286 9 H -0.212 1.212 10 H -0.232 1.232 11 H -0.175 1.175 12 C 0.005 3.995 13 N -0.252 5.252 14 C 0.293 3.707 15 N -0.276 5.276 16 C 0.173 3.827 17 Cl 0.086 6.914 18 N -0.151 5.151 19 H 0.263 0.737 20 C -0.034 4.034 21 N -0.264 5.264 22 C -0.104 4.104 23 N -0.217 5.217 24 C -0.259 4.259 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.269 0.731 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.541 -2.748 16.426 16.847 hybrid contribution -0.271 0.935 0.594 1.141 sum 2.270 -1.813 17.020 17.266 Atomic orbital electron populations 1.22351 0.97566 1.00051 1.00504 1.18769 0.92770 0.92402 0.93388 1.22411 1.01341 0.98152 0.99055 1.20602 1.34597 1.12467 0.87713 0.90304 1.24933 0.94483 0.97241 0.95757 1.69927 1.47679 1.35894 0.98803 0.87338 0.79497 0.85488 0.76254 1.21193 1.23182 1.17473 1.22088 0.99680 0.96458 0.81255 1.45580 1.47137 1.29444 1.03040 1.17871 0.82977 0.84399 0.85464 1.67376 1.23357 1.16584 1.20330 1.22412 0.89493 0.88838 0.81918 1.98537 1.63613 1.31571 1.97713 1.41416 1.41219 1.23205 1.09251 0.73679 1.19465 0.99539 0.90981 0.93368 1.70064 1.16214 1.07036 1.33045 1.24822 1.00556 0.98005 0.87065 1.70503 1.17686 1.15169 1.18325 1.19940 1.11771 1.02593 0.91601 0.95767 0.92093 0.93206 0.92544 0.93612 0.95085 0.92384 0.90225 0.90125 0.73139 0.78582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 7.53 37.16 0.28 -2.62 16 2 C 0.03 0.57 0.50 -155.66 -0.08 0.49 16 3 C -0.15 -3.00 7.52 37.15 0.28 -2.72 16 4 C -0.52 -12.96 8.62 -34.44 -0.30 -13.26 16 5 H 0.08 2.15 7.99 -52.48 -0.42 1.73 16 6 C 0.08 2.11 5.32 -17.82 -0.09 2.02 16 7 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 8 Si 0.88 20.49 22.79 -169.99 -3.87 16.61 16 9 H -0.28 -6.61 7.10 56.52 0.40 -6.21 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 11 H -0.25 -5.32 4.65 56.52 0.26 -5.06 16 12 C 0.13 2.21 4.50 -4.04 -0.02 2.20 16 13 N -0.63 -10.12 5.09 -60.20 -0.31 -10.43 16 14 C 0.54 8.43 7.53 -155.15 -1.17 7.26 16 15 N -0.54 -7.44 9.53 -10.42 -0.10 -7.54 16 16 C 0.47 4.99 8.23 -90.44 -0.74 4.25 16 17 Cl 0.06 0.43 29.19 -51.86 -1.51 -1.08 16 18 N -0.54 -5.62 5.36 -10.45 -0.06 -5.67 16 19 H 0.42 2.93 8.84 -40.82 -0.36 2.57 16 20 C 0.22 3.26 8.54 -155.46 -1.33 1.93 16 21 N -0.54 -8.67 11.32 -13.54 -0.15 -8.82 16 22 C 0.19 2.98 12.89 -91.44 -1.18 1.80 16 23 N -0.50 -8.70 11.38 -12.41 -0.14 -8.84 16 24 C -0.12 -1.98 7.16 -84.76 -0.61 -2.58 16 25 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 26 H 0.06 1.29 4.30 -51.93 -0.22 1.07 16 27 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.96 2.25 -51.93 -0.12 0.84 16 30 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.43 6.86 6.26 -40.82 -0.26 6.61 16 35 H 0.20 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -30.93 298.36 -9.32 -40.24 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.49 Total: 6.99 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -4.95 Total: -1.25 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 0.02 Total: -66.01 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -3.87 Total: 16.61 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.51 Total: -1.08 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.93 -9.32 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894161152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.455 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds