Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.50698 * 109.47012 * 240.00075 * 2 1 3 5 5 H 1.08006 * 120.00027 * 241.35413 * 4 2 1 6 6 C 1.37870 * 120.00294 * 61.34555 * 4 2 1 7 7 N 1.31510 * 120.00632 * 193.97857 * 6 4 2 8 8 Si 1.86810 * 119.99762 * 13.98207 * 6 4 2 9 9 H 1.48490 * 109.46987 * 84.54398 * 8 6 4 10 10 H 1.48503 * 109.46841 * 204.54877 * 8 6 4 11 11 H 1.48502 * 109.46846 * 324.54499 * 8 6 4 12 12 C 1.53000 * 109.46911 * 120.00062 * 2 1 3 13 13 N 1.46500 * 109.47505 * 299.99912 * 12 2 1 14 14 C 1.37260 * 120.00156 * 180.02562 * 13 12 2 15 15 N 1.33535 * 120.40691 * 0.02562 * 14 13 12 16 16 C 1.31023 * 121.94745 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 118.84411 * 179.97438 * 16 15 14 18 18 N 1.34489 * 122.31487 * 0.02562 * 16 15 14 19 19 H 0.97005 * 120.12923 * 180.02562 * 18 16 15 20 20 C 1.37680 * 119.74386 * 359.95833 * 18 16 15 21 21 N 1.32458 * 135.08016 * 180.02562 * 20 18 16 22 22 C 1.32815 * 108.71392 * 179.97438 * 21 20 18 23 23 N 1.31598 * 110.16249 * 0.02562 * 22 21 20 24 24 C 1.34324 * 108.19475 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46820 * 309.36789 * 1 2 3 26 26 H 1.08995 * 109.46857 * 69.36443 * 1 2 3 27 27 H 1.08995 * 109.47400 * 189.37118 * 1 2 3 28 28 H 1.09001 * 109.47426 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47290 * 300.00209 * 3 2 1 30 30 H 1.09003 * 109.47221 * 60.00204 * 3 2 1 31 31 H 0.96998 * 120.00783 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47000 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47400 * 60.00173 * 12 2 1 34 34 H 0.96993 * 119.99622 * 359.97438 * 13 12 2 35 35 H 1.08007 * 124.91280 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9157 -0.9725 -3.5459 8 14 1.0277 1.5007 -2.6684 9 1 2.1418 2.4816 -2.7083 10 1 0.2470 1.5866 -3.9287 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4455 14 6 1.8837 -0.4994 3.6921 15 7 2.6517 -1.5838 3.8240 16 6 2.9874 -2.0569 4.9989 17 17 3.9892 -3.4726 5.0766 18 7 2.5824 -1.4849 6.1467 19 1 2.8503 -1.8617 6.9995 20 6 1.7873 -0.3616 6.1067 21 7 1.2303 0.4260 7.0144 22 6 0.5532 1.3831 6.3903 23 7 0.6568 1.2357 5.0867 24 6 1.4200 0.1570 4.8459 25 1 -0.3633 0.6519 0.7945 26 1 -0.3633 0.3622 -0.9617 27 1 -0.3634 -1.0139 0.1673 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6979 -0.6298 -4.4268 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 0.9944 0.7581 2.3565 35 1 -0.0025 2.1682 6.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894161152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = 103.076528 kcal Electronic energy + Delta-G solvation = -21290.796957 eV Core-core repulsion = 17965.283156 eV Total energy + Delta-G solvation = -3325.513801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.42630 -40.65329 -39.58369 -38.35856 -37.08516 -34.65732 -33.49606 -31.93441 -30.64019 -28.10146 -27.61787 -26.95105 -25.58180 -24.25916 -22.54444 -21.19349 -19.87231 -19.47171 -18.55446 -18.10593 -17.81944 -17.43326 -16.94742 -16.15796 -15.81561 -15.72338 -15.04279 -14.87590 -14.83228 -14.57218 -14.07244 -13.95627 -13.81574 -13.00066 -12.90873 -12.75306 -12.43005 -12.24876 -12.00522 -11.98978 -11.81288 -11.54770 -11.08613 -10.72145 -10.60762 -10.54902 -10.44957 -10.12900 -8.95425 -8.30368 -6.30932 -1.03163 -0.53298 0.34612 1.31328 1.35154 1.38819 1.48485 1.75553 2.24569 2.33488 2.46617 2.91853 3.05469 3.08116 3.57590 3.85853 3.95484 4.27002 4.29175 4.36045 4.63278 4.75485 4.79596 4.87436 5.00727 5.07580 5.17004 5.28598 5.43373 5.56472 5.65176 5.70039 5.76850 6.00423 6.10852 6.27141 6.44616 6.74240 7.29451 7.34287 8.85669 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.004539 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.158854 B = 6167.121952 C = 7418.159217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 C -0.152 4.152 4 C -0.508 4.508 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.939 5.939 8 Si 0.932 3.068 9 H -0.283 1.283 10 H -0.316 1.316 11 H -0.215 1.215 12 C 0.147 3.853 13 N -0.637 5.637 14 C 0.544 3.456 15 N -0.560 5.560 16 C 0.479 3.521 17 Cl 0.097 6.903 18 N -0.518 5.518 19 H 0.443 0.557 20 C 0.217 3.783 21 N -0.552 5.552 22 C 0.179 3.821 23 N -0.523 5.523 24 C -0.144 4.144 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.427 0.573 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -2.408 19.851 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.024 3.976 3 C -0.209 4.209 4 C -0.546 4.546 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.578 5.578 8 Si 0.763 3.237 9 H -0.211 1.211 10 H -0.246 1.246 11 H -0.139 1.139 12 C 0.024 3.976 13 N -0.256 5.256 14 C 0.295 3.705 15 N -0.295 5.295 16 C 0.186 3.814 17 Cl 0.125 6.875 18 N -0.135 5.135 19 H 0.286 0.714 20 C -0.035 4.035 21 N -0.277 5.277 22 C -0.113 4.113 23 N -0.243 5.243 24 C -0.283 4.283 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.268 0.732 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.534 -2.348 18.939 19.251 hybrid contribution -0.145 0.617 -0.017 0.634 sum 2.389 -1.731 18.921 19.150 Atomic orbital electron populations 1.22271 0.96623 1.00766 1.00626 1.18707 0.93415 0.92920 0.92557 1.22345 1.01452 0.97248 0.99808 1.20894 1.32832 1.11273 0.89631 0.93678 1.25665 0.95377 1.00640 0.95572 1.70066 1.50510 1.37903 0.99351 0.86519 0.79361 0.81177 0.76654 1.21098 1.24576 1.13925 1.21642 0.99277 0.95793 0.80864 1.45275 1.48001 1.29678 1.02656 1.17900 0.82966 0.84695 0.84944 1.67446 1.23775 1.16408 1.21855 1.22742 0.88441 0.88983 0.81258 1.98565 1.62192 1.29180 1.97556 1.41333 1.40013 1.21918 1.10269 0.71427 1.19593 0.99490 0.91664 0.92713 1.70087 1.16801 1.07522 1.33319 1.25442 1.00470 0.98515 0.86895 1.70474 1.18679 1.16018 1.19147 1.20143 1.12555 1.03092 0.92489 0.92980 0.93561 0.93236 0.92589 0.94743 0.92169 0.92681 0.90554 0.90724 0.73162 0.76002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 7.53 71.98 0.54 -4.90 16 2 C 0.03 1.00 0.50 -52.93 -0.03 0.97 16 3 C -0.15 -5.61 7.52 71.98 0.54 -5.07 16 4 C -0.51 -25.82 8.62 25.60 0.22 -25.60 16 5 H 0.04 2.54 7.99 -2.91 -0.02 2.51 16 6 C 0.03 1.39 5.32 84.65 0.45 1.85 16 7 N -0.94 -55.70 13.96 21.44 0.30 -55.40 16 8 Si 0.93 42.05 22.79 68.60 1.56 43.61 16 9 H -0.28 -12.63 7.10 99.48 0.71 -11.93 16 10 H -0.32 -14.82 7.11 99.48 0.71 -14.12 16 11 H -0.22 -8.50 4.65 99.48 0.46 -8.04 16 12 C 0.15 4.96 4.50 86.38 0.39 5.35 16 13 N -0.64 -19.21 5.09 -344.39 -1.75 -20.96 16 14 C 0.54 16.02 7.53 133.67 1.01 17.02 16 15 N -0.56 -14.32 9.53 -186.89 -1.78 -16.10 16 16 C 0.48 9.04 8.23 180.29 1.48 10.53 16 17 Cl 0.10 1.17 29.19 -2.72 -0.08 1.09 16 18 N -0.52 -9.55 5.36 -186.97 -1.00 -10.56 16 19 H 0.44 4.79 8.84 -92.70 -0.82 3.97 16 20 C 0.22 6.08 8.54 134.00 1.14 7.22 16 21 N -0.55 -16.75 11.32 -196.74 -2.23 -18.97 16 22 C 0.18 5.37 12.89 180.63 2.33 7.70 16 23 N -0.52 -17.51 11.38 -193.17 -2.20 -19.71 16 24 C -0.14 -4.55 7.16 40.07 0.29 -4.27 16 25 H 0.05 1.66 7.13 -2.39 -0.02 1.64 16 26 H 0.05 1.86 4.30 -2.39 -0.01 1.85 16 27 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 1.35 2.25 -2.39 -0.01 1.35 16 30 H 0.06 1.87 6.86 -2.39 -0.02 1.86 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.43 12.75 6.26 -92.71 -0.58 12.17 16 35 H 0.22 5.01 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -67.52 298.36 0.72 -66.80 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.47 Total: 19.41 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 8.37 Total: 10.80 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -8.66 Total: -141.70 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.56 Total: 43.61 kcal Atomic # 17 Polarization: 1.17 SS G_CDS: -0.08 Total: 1.09 kcal Total: -67.52 0.72 -66.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894161152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.874 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds