Wall clock time and date at job start Tue Mar 31 2020 07:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47046 * 2 1 4 4 S 1.81403 * 109.47074 * 119.99463 * 2 1 3 5 5 C 1.81401 * 107.16747 * 295.34538 * 4 2 1 6 6 O 1.42104 * 113.53916 * 61.53670 * 4 2 1 7 7 N 1.49349 * 107.52386 * 180.02562 * 4 2 1 8 8 C 1.31323 * 120.00252 * 180.02562 * 7 4 2 9 9 O 1.22268 * 119.99490 * 0.02562 * 8 7 4 10 10 C 1.48478 * 120.00220 * 180.02562 * 8 7 4 11 11 C 1.39846 * 119.97448 * 359.71900 * 10 8 7 12 12 C 1.38552 * 120.47909 * 179.76324 * 11 10 8 13 13 C 1.37539 * 120.43240 * 0.52007 * 12 11 10 14 14 C 1.41291 * 119.92817 * 359.74413 * 13 12 11 15 15 C 1.40381 * 120.23259 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00335 * 25.16835 * 15 14 13 17 17 C 1.46543 * 119.99786 * 205.17144 * 15 14 13 18 18 N 1.29503 * 119.99908 * 12.42812 * 17 15 14 19 19 Si 1.86794 * 119.99804 * 192.42647 * 17 15 14 20 20 H 1.48505 * 109.47317 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47227 * 120.00000 * 19 17 15 22 22 H 1.48499 * 109.47366 * 239.99941 * 19 17 15 23 23 C 1.38536 * 119.97693 * 180.02562 * 10 8 7 24 24 H 1.08994 * 109.47245 * 300.00234 * 1 2 3 25 25 H 1.09001 * 109.47151 * 60.00620 * 1 2 3 26 26 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47060 * 239.99263 * 2 1 3 28 28 H 1.09006 * 109.47115 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47099 * 299.99693 * 3 2 1 30 30 H 1.08997 * 109.47793 * 59.99712 * 3 2 1 31 31 H 1.09007 * 109.46998 * 306.19145 * 5 4 2 32 32 H 1.09007 * 109.46661 * 186.19954 * 5 4 2 33 33 H 1.08996 * 109.47629 * 66.19363 * 5 4 2 34 34 H 1.08003 * 119.75938 * 0.02562 * 11 10 8 35 35 H 1.08008 * 119.78587 * 180.26129 * 12 11 10 36 36 H 1.07991 * 120.03761 * 179.76376 * 13 12 11 37 37 H 0.96999 * 119.99681 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.21095 * 359.94850 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.6136 0.1256 2.9157 6 8 1.7384 -2.2179 1.5513 7 7 3.6273 -0.8291 1.4376 8 6 4.3222 -1.3865 2.4025 9 8 3.7472 -1.9271 3.3363 10 6 5.8061 -1.3602 2.3594 11 6 6.4633 -0.7469 1.2881 12 6 7.8475 -0.7121 1.2397 13 6 8.5943 -1.2898 2.2398 14 6 7.9488 -1.9190 3.3278 15 6 8.7047 -2.5103 4.3523 16 1 9.7084 -2.1648 4.5511 17 6 8.1318 -3.5964 5.1521 18 7 7.0372 -4.1737 4.7705 19 14 8.9806 -4.1481 6.7220 20 1 10.2051 -3.3352 6.9347 21 1 8.0595 -3.9668 7.8727 22 1 9.3523 -5.5811 6.6065 23 6 6.5387 -1.9488 3.3773 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.9504 1.1551 2.7937 32 1 2.0510 -0.2949 3.8213 33 1 0.5267 0.1058 2.9940 34 1 5.8875 -0.2934 0.4948 35 1 8.3434 -0.2317 0.4091 36 1 9.6729 -1.2622 2.1938 37 1 6.6583 -4.8929 5.2997 38 1 6.0339 -2.4268 4.2038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926066086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:54 Heat of formation + Delta-G solvation = -13.966144 kcal Electronic energy + Delta-G solvation = -21536.659369 eV Core-core repulsion = 18279.361516 eV Total energy + Delta-G solvation = -3257.297853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.97561 -36.77600 -36.22487 -35.63659 -33.46618 -32.75188 -29.98257 -29.42801 -29.18520 -27.88337 -24.83468 -23.59072 -22.47391 -20.60837 -19.53042 -18.01314 -17.38187 -16.79660 -16.04665 -15.81346 -15.31356 -14.97013 -14.60671 -14.08548 -13.95528 -13.67068 -13.55769 -13.38475 -12.92816 -12.83416 -12.74222 -12.71317 -12.37375 -11.99708 -11.89089 -11.74499 -11.47598 -11.05090 -10.93005 -10.70953 -10.49410 -10.26429 -9.96265 -9.52528 -9.33279 -9.19355 -9.13195 -8.88184 -7.38739 -7.26482 -6.70653 -4.16413 -0.62955 2.25863 2.62023 2.93499 3.10987 3.15864 3.16315 3.35850 3.72774 3.95510 3.95900 3.99101 4.36922 4.49483 4.68576 4.78469 4.86048 4.88113 4.97763 5.20916 5.23565 5.37422 5.65447 5.73720 5.84802 6.05885 6.41310 6.81610 6.92932 7.02136 7.22301 7.39174 7.44850 7.66316 8.06961 8.12573 8.26449 8.30790 8.70223 8.91522 9.00206 9.15097 10.17451 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.004249 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.923212 B = 6587.989388 C = 7370.958292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.457 4.457 3 C -0.151 4.151 4 S 2.283 3.717 5 C -0.632 4.632 6 O -0.924 6.924 7 N -1.104 6.104 8 C 0.592 3.408 9 O -0.587 6.587 10 C -0.094 4.094 11 C -0.195 4.195 12 C -0.108 4.108 13 C -0.221 4.221 14 C 0.095 3.905 15 C -0.473 4.473 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.761 5.761 19 Si 0.915 3.085 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.157 0.843 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.287 0.713 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 11.169 -7.616 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.575 4.575 3 C -0.209 4.209 4 S 2.479 3.521 5 C -0.786 4.786 6 O -0.910 6.910 7 N -1.012 6.012 8 C 0.383 3.617 9 O -0.470 6.470 10 C -0.101 4.101 11 C -0.215 4.215 12 C -0.126 4.126 13 C -0.241 4.241 14 C 0.093 3.907 15 C -0.502 4.502 16 H 0.099 0.901 17 C -0.154 4.154 18 N -0.383 5.383 19 Si 0.739 3.261 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.136 4.136 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.174 0.826 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.416 10.045 -7.441 19.081 hybrid contribution -0.015 -0.138 0.988 0.998 sum -14.431 9.907 -6.453 18.655 Atomic orbital electron populations 1.21941 0.89776 1.04678 1.05336 1.28831 1.05158 1.09154 1.14357 1.21873 1.04323 0.90242 1.04446 1.13947 0.78800 0.78768 0.80547 1.30113 1.11553 1.15668 1.21308 1.93521 1.85508 1.27333 1.84619 1.70254 1.18645 1.64942 1.47336 1.18158 0.90767 0.73664 0.79133 1.90961 1.72208 1.45797 1.38042 1.19137 0.88742 1.03997 0.98198 1.20521 0.93294 1.07921 0.99796 1.20477 0.93833 1.00523 0.97785 1.21087 0.97443 1.09165 0.96420 1.17528 0.91475 0.90436 0.91269 1.20629 1.00833 1.14983 1.13708 0.90093 1.27452 0.94030 0.95342 0.98542 1.69136 1.16818 1.16646 1.35736 0.86160 0.80413 0.78831 0.80682 1.18087 1.19617 1.19863 1.21773 0.93781 0.99637 0.98405 0.90806 0.88646 0.90241 0.82562 0.88639 0.89451 0.91089 0.85162 0.83713 0.86358 0.87880 0.89380 0.89110 0.90059 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 9.16 37.16 0.34 -0.42 16 2 C -0.46 -3.37 3.51 -26.73 -0.09 -3.46 16 3 C -0.15 -0.86 8.98 37.15 0.33 -0.52 16 4 S 2.28 32.30 3.37 -107.50 -0.36 31.93 16 5 C -0.63 -6.89 9.94 101.05 1.00 -5.88 16 6 O -0.92 -18.28 17.26 -52.16 -0.90 -19.18 16 7 N -1.10 -21.14 9.14 29.49 0.27 -20.87 16 8 C 0.59 14.76 7.31 -13.55 -0.10 14.67 16 9 O -0.59 -15.97 14.32 -12.25 -0.18 -16.14 16 10 C -0.09 -2.54 5.87 -104.96 -0.62 -3.16 16 11 C -0.20 -4.76 9.59 -38.86 -0.37 -5.13 16 12 C -0.11 -2.57 10.01 -39.72 -0.40 -2.97 16 13 C -0.22 -5.73 9.80 -38.68 -0.38 -6.11 16 14 C 0.10 2.72 5.62 -106.84 -0.60 2.12 16 15 C -0.47 -13.20 9.32 -35.43 -0.33 -13.53 16 16 H 0.08 2.14 7.96 -52.49 -0.42 1.72 16 17 C 0.07 1.87 5.41 -15.19 -0.08 1.78 16 18 N -0.76 -21.20 10.84 55.99 0.61 -20.59 16 19 Si 0.92 19.38 29.66 -169.99 -5.04 14.34 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.12 -3.37 8.30 -38.38 -0.32 -3.69 16 24 H 0.07 0.21 7.68 -51.93 -0.40 -0.18 16 25 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.16 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.28 6.85 -51.93 -0.36 -0.08 16 31 H 0.13 1.01 7.07 -51.92 -0.37 0.64 16 32 H 0.14 2.09 7.05 -51.92 -0.37 1.73 16 33 H 0.12 0.84 7.85 -51.93 -0.41 0.43 16 34 H 0.10 2.23 7.53 -52.48 -0.40 1.83 16 35 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.29 7.24 8.27 -40.82 -0.34 6.91 16 38 H 0.13 4.11 5.62 -52.48 -0.29 3.82 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -39.36 331.38 -7.31 -46.67 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.09 Total: 5.14 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -1.61 Total: -26.30 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.88 Total: -41.46 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.08 Total: -35.32 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.04 Total: 14.34 kcal Atomic # 16 Polarization: 32.30 SS G_CDS: -0.36 Total: 31.93 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -39.36 -7.31 -46.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926066086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.707 kcal (2) G-P(sol) polarization free energy of solvation -39.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds