Wall clock time and date at job start Tue Mar 31 2020 07:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47046 * 2 1 4 4 S 1.81403 * 109.47074 * 119.99463 * 2 1 3 5 5 C 1.81401 * 107.16747 * 295.34538 * 4 2 1 6 6 O 1.42104 * 113.53916 * 61.53670 * 4 2 1 7 7 N 1.49349 * 107.52386 * 180.02562 * 4 2 1 8 8 C 1.31323 * 120.00252 * 180.02562 * 7 4 2 9 9 O 1.22268 * 119.99490 * 0.02562 * 8 7 4 10 10 C 1.48478 * 120.00220 * 180.02562 * 8 7 4 11 11 C 1.39846 * 119.97448 * 359.71900 * 10 8 7 12 12 C 1.38552 * 120.47909 * 179.76324 * 11 10 8 13 13 C 1.37539 * 120.43240 * 0.52007 * 12 11 10 14 14 C 1.41291 * 119.92817 * 359.74413 * 13 12 11 15 15 C 1.40381 * 120.23259 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00335 * 25.16835 * 15 14 13 17 17 C 1.46543 * 119.99786 * 205.17144 * 15 14 13 18 18 N 1.29503 * 119.99908 * 12.42812 * 17 15 14 19 19 Si 1.86794 * 119.99804 * 192.42647 * 17 15 14 20 20 H 1.48505 * 109.47317 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47227 * 120.00000 * 19 17 15 22 22 H 1.48499 * 109.47366 * 239.99941 * 19 17 15 23 23 C 1.38536 * 119.97693 * 180.02562 * 10 8 7 24 24 H 1.08994 * 109.47245 * 300.00234 * 1 2 3 25 25 H 1.09001 * 109.47151 * 60.00620 * 1 2 3 26 26 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47060 * 239.99263 * 2 1 3 28 28 H 1.09006 * 109.47115 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47099 * 299.99693 * 3 2 1 30 30 H 1.08997 * 109.47793 * 59.99712 * 3 2 1 31 31 H 1.09007 * 109.46998 * 306.19145 * 5 4 2 32 32 H 1.09007 * 109.46661 * 186.19954 * 5 4 2 33 33 H 1.08996 * 109.47629 * 66.19363 * 5 4 2 34 34 H 1.08003 * 119.75938 * 0.02562 * 11 10 8 35 35 H 1.08008 * 119.78587 * 180.26129 * 12 11 10 36 36 H 1.07991 * 120.03761 * 179.76376 * 13 12 11 37 37 H 0.96999 * 119.99681 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.21095 * 359.94850 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.6136 0.1256 2.9157 6 8 1.7384 -2.2179 1.5513 7 7 3.6273 -0.8291 1.4376 8 6 4.3222 -1.3865 2.4025 9 8 3.7472 -1.9271 3.3363 10 6 5.8061 -1.3602 2.3594 11 6 6.4633 -0.7469 1.2881 12 6 7.8475 -0.7121 1.2397 13 6 8.5943 -1.2898 2.2398 14 6 7.9488 -1.9190 3.3278 15 6 8.7047 -2.5103 4.3523 16 1 9.7084 -2.1648 4.5511 17 6 8.1318 -3.5964 5.1521 18 7 7.0372 -4.1737 4.7705 19 14 8.9806 -4.1481 6.7220 20 1 10.2051 -3.3352 6.9347 21 1 8.0595 -3.9668 7.8727 22 1 9.3523 -5.5811 6.6065 23 6 6.5387 -1.9488 3.3773 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.9504 1.1551 2.7937 32 1 2.0510 -0.2949 3.8213 33 1 0.5267 0.1058 2.9940 34 1 5.8875 -0.2934 0.4948 35 1 8.3434 -0.2317 0.4091 36 1 9.6729 -1.2622 2.1938 37 1 6.6583 -4.8929 5.2997 38 1 6.0339 -2.4268 4.2038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926066086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:53 Heat of formation + Delta-G solvation = -44.054777 kcal Electronic energy + Delta-G solvation = -21537.964110 eV Core-core repulsion = 18279.361516 eV Total energy + Delta-G solvation = -3258.602594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76414 -38.72154 -37.52905 -36.21481 -35.48722 -34.36093 -31.95848 -31.24632 -30.36335 -28.27639 -26.87798 -25.07977 -23.51029 -22.62886 -21.21175 -19.62830 -18.87467 -17.90456 -17.62183 -17.25958 -16.97293 -16.43600 -16.00090 -15.73352 -15.08865 -15.00807 -14.74474 -14.47080 -14.39145 -14.20204 -14.15729 -13.83416 -13.39862 -13.06745 -13.02330 -12.89673 -12.80137 -12.45985 -12.42159 -12.36192 -12.07692 -11.89050 -11.61151 -11.45467 -11.14423 -10.91965 -10.75448 -10.69243 -9.43657 -9.31834 -8.69321 -6.28787 -1.59553 0.43710 1.07600 1.33896 1.39456 1.51088 1.52227 1.87351 2.15876 2.19855 2.71729 3.04209 3.40230 3.53192 3.77968 3.84245 3.95083 4.04829 4.22375 4.54938 4.60474 4.61386 4.71757 4.82950 4.85058 4.88030 4.99538 5.02714 5.14419 5.32749 5.34686 5.36654 5.47870 5.62702 6.03063 6.09456 6.19867 6.27829 6.65107 6.82867 7.07029 7.18820 8.21232 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.004249 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.923212 B = 6587.989388 C = 7370.958292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.395 4.395 3 C -0.162 4.162 4 S 2.232 3.768 5 C -0.610 4.610 6 O -0.999 6.999 7 N -1.116 6.116 8 C 0.580 3.420 9 O -0.634 6.634 10 C -0.117 4.117 11 C -0.187 4.187 12 C -0.102 4.102 13 C -0.230 4.230 14 C 0.066 3.934 15 C -0.512 4.512 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.806 5.806 19 Si 0.998 3.002 20 H -0.246 1.246 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.159 4.159 24 H 0.101 0.899 25 H 0.135 0.865 26 H 0.070 0.930 27 H 0.169 0.831 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.170 0.830 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.292 0.708 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 14.407 -9.709 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.516 4.516 3 C -0.220 4.220 4 S 2.437 3.563 5 C -0.767 4.767 6 O -0.985 6.985 7 N -1.019 6.019 8 C 0.370 3.630 9 O -0.521 6.521 10 C -0.122 4.122 11 C -0.207 4.207 12 C -0.119 4.119 13 C -0.250 4.250 14 C 0.063 3.937 15 C -0.539 4.539 16 H 0.105 0.895 17 C -0.196 4.196 18 N -0.429 5.429 19 Si 0.817 3.183 20 H -0.168 1.168 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.180 4.180 24 H 0.120 0.880 25 H 0.153 0.847 26 H 0.089 0.911 27 H 0.186 0.814 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.115 0.885 31 H 0.188 0.812 32 H 0.123 0.877 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.955 13.273 -9.573 22.855 hybrid contribution 0.214 -0.912 1.405 1.689 sum -15.741 12.361 -8.167 21.617 Atomic orbital electron populations 1.22260 0.86694 1.05310 1.08559 1.28752 1.06869 1.08766 1.07199 1.22159 1.03614 0.88635 1.07585 1.15241 0.76966 0.79475 0.84610 1.29788 1.14401 1.15976 1.16491 1.93470 1.85677 1.32472 1.86929 1.69715 1.22687 1.63077 1.46464 1.18083 0.90729 0.74173 0.79972 1.90908 1.72932 1.48191 1.40022 1.19638 0.91001 1.03378 0.98225 1.20892 0.93935 1.06526 0.99313 1.20942 0.93641 0.99203 0.98156 1.21394 0.98520 1.08827 0.96257 1.17928 0.91590 0.91409 0.92727 1.20970 1.01435 1.16281 1.15259 0.89498 1.28535 0.94444 0.94682 1.01960 1.69256 1.18679 1.17396 1.37560 0.84949 0.79294 0.78824 0.75251 1.16849 1.19084 1.18493 1.21599 0.94563 1.02615 0.99228 0.88031 0.84663 0.91133 0.81369 0.90295 0.85505 0.88499 0.81156 0.87726 0.81555 0.84834 0.84738 0.87451 0.89574 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 9.16 71.98 0.66 0.00 16 2 C -0.39 -4.12 3.51 30.59 0.11 -4.02 16 3 C -0.16 -0.89 8.98 71.98 0.65 -0.24 16 4 S 2.23 62.46 3.37 -56.49 -0.19 62.27 16 5 C -0.61 -12.19 9.94 113.37 1.13 -11.06 16 6 O -1.00 -41.94 17.26 -132.80 -2.29 -44.23 16 7 N -1.12 -43.89 9.14 -180.48 -1.65 -45.54 16 8 C 0.58 30.95 7.31 87.50 0.64 31.59 16 9 O -0.63 -37.81 14.32 9.99 0.14 -37.67 16 10 C -0.12 -6.66 5.87 -20.09 -0.12 -6.78 16 11 C -0.19 -9.14 9.59 22.73 0.22 -8.93 16 12 C -0.10 -4.74 10.01 22.18 0.22 -4.52 16 13 C -0.23 -12.14 9.80 22.86 0.22 -11.92 16 14 C 0.07 3.96 5.62 -21.30 -0.12 3.84 16 15 C -0.51 -30.10 9.32 24.96 0.23 -29.87 16 16 H 0.09 4.79 7.96 -2.91 -0.02 4.77 16 17 C 0.02 1.32 5.41 87.20 0.47 1.79 16 18 N -0.81 -48.31 10.84 23.21 0.25 -48.05 16 19 Si 1.00 41.33 29.66 68.60 2.03 43.36 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.16 -10.07 8.30 23.05 0.19 -9.88 16 24 H 0.10 -0.09 7.68 -2.39 -0.02 -0.11 16 25 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.17 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.08 0.81 8.08 -2.38 -0.02 0.79 16 29 H 0.13 -0.05 8.14 -2.38 -0.02 -0.07 16 30 H 0.10 0.10 6.85 -2.39 -0.02 0.08 16 31 H 0.17 1.97 7.07 -2.39 -0.02 1.95 16 32 H 0.10 3.16 7.05 -2.39 -0.02 3.15 16 33 H 0.17 1.69 7.85 -2.39 -0.02 1.68 16 34 H 0.13 5.59 7.53 -2.91 -0.02 5.56 16 35 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.11 5.16 8.06 -2.92 -0.02 5.14 16 37 H 0.29 15.89 8.27 -92.71 -0.77 15.12 16 38 H 0.10 6.75 5.62 -2.91 -0.02 6.73 16 Total: -1.00 -100.57 331.38 3.86 -96.71 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.06 Total: 23.15 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 4.50 Total: -49.99 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -1.40 Total: -93.60 kcal Atomic # 8 Polarization: -79.75 SS G_CDS: -2.15 Total: -81.89 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 62.46 SS G_CDS: -0.19 Total: 62.27 kcal Total: -100.57 3.86 -96.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926066086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.651 kcal (2) G-P(sol) polarization free energy of solvation -100.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds