Wall clock time and date at job start Tue Mar 31 2020 07:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 S 1.81400 * 109.47223 * 120.00010 * 2 1 3 5 5 C 1.81404 * 107.16552 * 304.66169 * 4 2 1 6 6 O 1.42092 * 113.54157 * 178.46405 * 4 2 1 7 7 N 1.49351 * 107.52181 * 60.00189 * 4 2 1 8 8 C 1.31322 * 119.99922 * 179.97438 * 7 4 2 9 9 O 1.22266 * 120.00201 * 359.97438 * 8 7 4 10 10 C 1.48489 * 119.99867 * 180.02562 * 8 7 4 11 11 C 1.39835 * 119.97604 * 359.71954 * 10 8 7 12 12 C 1.38556 * 120.48313 * 179.76277 * 11 10 8 13 13 C 1.37538 * 120.42406 * 0.51614 * 12 11 10 14 14 C 1.41284 * 119.93350 * 359.74844 * 13 12 11 15 15 C 1.40385 * 120.23317 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99951 * 25.17753 * 15 14 13 17 17 C 1.46536 * 119.99969 * 205.17775 * 15 14 13 18 18 N 1.29509 * 120.00135 * 12.42054 * 17 15 14 19 19 Si 1.86794 * 120.00089 * 192.42021 * 17 15 14 20 20 H 1.48501 * 109.47147 * 60.00321 * 19 17 15 21 21 H 1.48499 * 109.47312 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47195 * 300.00207 * 19 17 15 23 23 C 1.38542 * 119.97078 * 180.02562 * 10 8 7 24 24 H 1.08998 * 109.47193 * 60.00485 * 1 2 3 25 25 H 1.09010 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47427 * 299.99533 * 1 2 3 27 27 H 1.09002 * 109.46978 * 240.00185 * 2 1 3 28 28 H 1.08998 * 109.47131 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47088 * 300.00407 * 3 2 1 30 30 H 1.09001 * 109.46715 * 60.00031 * 3 2 1 31 31 H 1.09007 * 109.46436 * 173.80091 * 5 4 2 32 32 H 1.08993 * 109.47017 * 293.79791 * 5 4 2 33 33 H 1.09003 * 109.46687 * 53.80544 * 5 4 2 34 34 H 1.08002 * 119.76055 * 0.02562 * 11 10 8 35 35 H 1.07994 * 119.78819 * 180.26356 * 12 11 10 36 36 H 1.08003 * 120.02858 * 179.76098 * 13 12 11 37 37 H 0.96991 * 120.00316 * 180.02562 * 18 17 15 38 38 H 1.07992 * 120.21563 * 359.95542 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.3838 -0.0372 2.9156 6 8 3.5516 -0.9359 1.5511 7 7 1.6133 -2.2540 1.4371 8 6 1.9074 -3.0950 2.4018 9 8 2.6085 -2.7330 3.3359 10 6 1.3894 -4.4859 2.3578 11 6 0.5837 -4.8979 1.2918 12 6 0.0987 -6.1947 1.2376 13 6 0.3948 -7.0914 2.2375 14 6 1.2028 -6.6925 3.3257 15 6 1.5094 -7.6027 4.3495 16 1 1.4996 -8.6639 4.1494 17 6 1.8426 -7.1129 5.6898 18 7 1.6244 -5.8745 5.9995 19 14 2.5822 -8.2748 6.9517 20 1 3.8671 -8.8123 6.4365 21 1 2.8264 -7.5394 8.2185 22 1 1.6418 -9.3962 7.2031 23 6 1.6996 -5.3725 3.3761 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6346 -0.5897 3.8212 32 1 1.7649 0.9810 2.9940 33 1 0.3010 -0.0116 2.7936 34 1 0.3411 -4.2015 0.5027 35 1 -0.5191 -6.5022 0.4069 36 1 0.0102 -8.0996 2.1908 37 1 1.8453 -5.5502 6.8865 38 1 2.3181 -5.0559 4.2028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926066087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:57 Heat of formation + Delta-G solvation = -14.291657 kcal Electronic energy + Delta-G solvation = -21543.560977 eV Core-core repulsion = 18286.249009 eV Total energy + Delta-G solvation = -3257.311968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -38.97477 -36.77935 -36.23262 -35.63451 -33.47167 -32.75109 -29.98308 -29.41599 -29.18390 -27.87955 -24.83957 -23.59040 -22.47346 -20.61257 -19.53101 -18.01451 -17.38527 -16.79766 -16.04068 -15.81538 -15.32700 -14.96096 -14.61941 -14.08487 -13.94807 -13.66128 -13.54876 -13.38204 -12.94272 -12.82695 -12.73504 -12.69179 -12.37637 -11.99525 -11.88758 -11.75567 -11.46763 -11.04721 -10.92099 -10.72344 -10.52258 -10.28578 -9.96002 -9.53951 -9.32723 -9.18972 -9.12559 -8.88247 -7.39125 -7.26731 -6.72265 -4.16904 -0.62654 2.25996 2.62257 2.96543 3.09966 3.12193 3.15658 3.36304 3.72871 3.94918 3.96123 3.99142 4.37188 4.49641 4.69403 4.79368 4.87267 4.88866 4.97774 5.21492 5.23913 5.37631 5.67137 5.75914 5.84570 6.05761 6.41274 6.81248 6.92697 7.01252 7.22255 7.38994 7.44591 7.65894 8.06507 8.12185 8.26270 8.30245 8.69549 8.90961 9.00209 9.14660 10.16095 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.004256 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.020381 B = 6577.633613 C = 7337.942790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.457 4.457 3 C -0.159 4.159 4 S 2.284 3.716 5 C -0.632 4.632 6 O -0.926 6.926 7 N -1.104 6.104 8 C 0.592 3.408 9 O -0.587 6.587 10 C -0.094 4.094 11 C -0.195 4.195 12 C -0.108 4.108 13 C -0.222 4.222 14 C 0.096 3.904 15 C -0.474 4.474 16 H 0.080 0.920 17 C 0.072 3.928 18 N -0.764 5.764 19 Si 0.917 3.083 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.115 4.115 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.287 0.713 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 16.138 -8.995 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.575 4.575 3 C -0.217 4.217 4 S 2.480 3.520 5 C -0.786 4.786 6 O -0.912 6.912 7 N -1.012 6.012 8 C 0.383 3.617 9 O -0.470 6.470 10 C -0.101 4.101 11 C -0.215 4.215 12 C -0.126 4.126 13 C -0.241 4.241 14 C 0.093 3.907 15 C -0.502 4.502 16 H 0.099 0.901 17 C -0.152 4.152 18 N -0.386 5.386 19 Si 0.741 3.259 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.135 4.135 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.174 0.826 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.670 16.239 -8.668 18.601 hybrid contribution 0.089 -0.037 1.007 1.012 sum -2.581 16.203 -7.661 18.107 Atomic orbital electron populations 1.21878 0.88641 1.05926 1.04463 1.28832 1.07321 1.07011 1.14335 1.21942 1.02831 0.91608 1.05355 1.13907 0.77764 0.79769 0.80530 1.30106 1.13522 1.13692 1.21263 1.93511 1.28594 1.84389 1.84662 1.70245 1.68628 1.15031 1.47329 1.18156 0.76093 0.88408 0.79062 1.90961 1.38589 1.79632 1.37844 1.19138 1.02331 0.90682 0.97918 1.20519 1.05591 0.95787 0.99632 1.20476 1.00347 0.94092 0.97695 1.21089 1.05278 0.98747 0.99036 1.17517 0.89256 0.92095 0.91798 1.20573 1.42946 0.94239 0.92414 0.90149 1.27432 0.92712 0.95185 0.99897 1.69110 1.31608 1.16312 1.21610 0.86252 0.80527 0.80641 0.78519 1.18565 1.20285 1.18784 1.21774 1.00578 0.93507 0.97653 0.89452 0.88633 0.91059 0.82577 0.90253 0.88651 0.90786 0.83620 0.86370 0.85133 0.87874 0.89373 0.89110 0.90053 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.98 37.16 0.33 -0.54 16 2 C -0.46 -3.37 3.51 -26.73 -0.09 -3.46 16 3 C -0.16 -0.76 9.16 37.16 0.34 -0.42 16 4 S 2.28 32.31 3.37 -107.50 -0.36 31.94 16 5 C -0.63 -7.08 9.94 101.05 1.00 -6.08 16 6 O -0.93 -18.08 17.26 -52.16 -0.90 -18.98 16 7 N -1.10 -21.15 9.14 29.49 0.27 -20.88 16 8 C 0.59 14.77 7.31 -13.55 -0.10 14.67 16 9 O -0.59 -15.97 14.32 -12.26 -0.18 -16.14 16 10 C -0.09 -2.54 5.87 -104.96 -0.62 -3.15 16 11 C -0.20 -4.75 9.59 -38.87 -0.37 -5.13 16 12 C -0.11 -2.57 10.01 -39.72 -0.40 -2.96 16 13 C -0.22 -5.74 9.80 -38.68 -0.38 -6.12 16 14 C 0.10 2.73 5.62 -106.84 -0.60 2.13 16 15 C -0.47 -13.20 9.32 -35.43 -0.33 -13.53 16 16 H 0.08 2.12 7.96 -52.49 -0.42 1.70 16 17 C 0.07 1.89 5.41 -15.19 -0.08 1.80 16 18 N -0.76 -20.86 10.84 55.98 0.61 -20.25 16 19 Si 0.92 19.37 29.66 -169.99 -5.04 14.33 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.11 -3.35 8.30 -38.37 -0.32 -3.67 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.71 8.08 -51.92 -0.42 0.29 16 26 H 0.07 0.29 6.85 -51.93 -0.36 -0.06 16 27 H 0.16 1.02 8.14 -51.92 -0.42 0.60 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.22 7.68 -51.93 -0.40 -0.18 16 31 H 0.15 2.18 7.06 -51.92 -0.37 1.82 16 32 H 0.12 0.86 7.85 -51.93 -0.41 0.45 16 33 H 0.13 1.07 7.07 -51.92 -0.37 0.70 16 34 H 0.10 2.23 7.53 -52.49 -0.40 1.83 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.29 7.11 8.27 -40.82 -0.34 6.77 16 38 H 0.13 4.12 5.62 -52.49 -0.29 3.82 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -38.91 331.39 -7.31 -46.22 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.09 Total: 5.23 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -1.61 Total: -26.47 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.88 Total: -41.13 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.08 Total: -35.13 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.04 Total: 14.33 kcal Atomic # 16 Polarization: 32.31 SS G_CDS: -0.36 Total: 31.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -38.91 -7.31 -46.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926066087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.933 kcal (2) G-P(sol) polarization free energy of solvation -38.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds