Wall clock time and date at job start Tue Mar 31 2020 07:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 S 1.81400 * 109.47223 * 120.00010 * 2 1 3 5 5 C 1.81404 * 107.16552 * 304.66169 * 4 2 1 6 6 O 1.42092 * 113.54157 * 178.46405 * 4 2 1 7 7 N 1.49351 * 107.52181 * 60.00189 * 4 2 1 8 8 C 1.31322 * 119.99922 * 179.97438 * 7 4 2 9 9 O 1.22266 * 120.00201 * 359.97438 * 8 7 4 10 10 C 1.48489 * 119.99867 * 180.02562 * 8 7 4 11 11 C 1.39835 * 119.97604 * 359.71954 * 10 8 7 12 12 C 1.38556 * 120.48313 * 179.76277 * 11 10 8 13 13 C 1.37538 * 120.42406 * 0.51614 * 12 11 10 14 14 C 1.41284 * 119.93350 * 359.74844 * 13 12 11 15 15 C 1.40385 * 120.23317 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99951 * 25.17753 * 15 14 13 17 17 C 1.46536 * 119.99969 * 205.17775 * 15 14 13 18 18 N 1.29509 * 120.00135 * 12.42054 * 17 15 14 19 19 Si 1.86794 * 120.00089 * 192.42021 * 17 15 14 20 20 H 1.48501 * 109.47147 * 60.00321 * 19 17 15 21 21 H 1.48499 * 109.47312 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47195 * 300.00207 * 19 17 15 23 23 C 1.38542 * 119.97078 * 180.02562 * 10 8 7 24 24 H 1.08998 * 109.47193 * 60.00485 * 1 2 3 25 25 H 1.09010 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47427 * 299.99533 * 1 2 3 27 27 H 1.09002 * 109.46978 * 240.00185 * 2 1 3 28 28 H 1.08998 * 109.47131 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47088 * 300.00407 * 3 2 1 30 30 H 1.09001 * 109.46715 * 60.00031 * 3 2 1 31 31 H 1.09007 * 109.46436 * 173.80091 * 5 4 2 32 32 H 1.08993 * 109.47017 * 293.79791 * 5 4 2 33 33 H 1.09003 * 109.46687 * 53.80544 * 5 4 2 34 34 H 1.08002 * 119.76055 * 0.02562 * 11 10 8 35 35 H 1.07994 * 119.78819 * 180.26356 * 12 11 10 36 36 H 1.08003 * 120.02858 * 179.76098 * 13 12 11 37 37 H 0.96991 * 120.00316 * 180.02562 * 18 17 15 38 38 H 1.07992 * 120.21563 * 359.95542 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.3838 -0.0372 2.9156 6 8 3.5516 -0.9359 1.5511 7 7 1.6133 -2.2540 1.4371 8 6 1.9074 -3.0950 2.4018 9 8 2.6085 -2.7330 3.3359 10 6 1.3894 -4.4859 2.3578 11 6 0.5837 -4.8979 1.2918 12 6 0.0987 -6.1947 1.2376 13 6 0.3948 -7.0914 2.2375 14 6 1.2028 -6.6925 3.3257 15 6 1.5094 -7.6027 4.3495 16 1 1.4996 -8.6639 4.1494 17 6 1.8426 -7.1129 5.6898 18 7 1.6244 -5.8745 5.9995 19 14 2.5822 -8.2748 6.9517 20 1 3.8671 -8.8123 6.4365 21 1 2.8264 -7.5394 8.2185 22 1 1.6418 -9.3962 7.2031 23 6 1.6996 -5.3725 3.3761 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6346 -0.5897 3.8212 32 1 1.7649 0.9810 2.9940 33 1 0.3010 -0.0116 2.7936 34 1 0.3411 -4.2015 0.5027 35 1 -0.5191 -6.5022 0.4069 36 1 0.0102 -8.0996 2.1908 37 1 1.8453 -5.5502 6.8865 38 1 2.3181 -5.0559 4.2028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926066087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:56 Heat of formation + Delta-G solvation = -43.848757 kcal Electronic energy + Delta-G solvation = -21544.842669 eV Core-core repulsion = 18286.249009 eV Total energy + Delta-G solvation = -3258.593661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76473 -38.72092 -37.53149 -36.21514 -35.47998 -34.36231 -31.95501 -31.24437 -30.36552 -28.27786 -26.87454 -25.08023 -23.51195 -22.62668 -21.21174 -19.62728 -18.87581 -17.90545 -17.61858 -17.24999 -16.99338 -16.43345 -15.99332 -15.74149 -15.09351 -15.00672 -14.73102 -14.47904 -14.39097 -14.19371 -14.15915 -13.83374 -13.40522 -13.06828 -13.01226 -12.88510 -12.80549 -12.45560 -12.43450 -12.36568 -12.10820 -11.88813 -11.61408 -11.47088 -11.11377 -10.90884 -10.75812 -10.70334 -9.43550 -9.31744 -8.69434 -6.28339 -1.59701 0.43765 1.09337 1.33929 1.39386 1.47706 1.53540 1.86468 2.15648 2.20720 2.72815 3.02932 3.40181 3.52796 3.78190 3.83909 3.94463 4.04741 4.22019 4.55008 4.60487 4.61536 4.71855 4.82627 4.84793 4.87880 4.99604 5.02935 5.14604 5.32451 5.34655 5.36772 5.47670 5.62600 6.02860 6.09577 6.19883 6.27973 6.65047 6.82803 7.06985 7.18703 8.21172 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.004256 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.020381 B = 6577.633613 C = 7337.942790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.394 4.394 3 C -0.169 4.169 4 S 2.235 3.765 5 C -0.612 4.612 6 O -0.997 6.997 7 N -1.116 6.116 8 C 0.580 3.420 9 O -0.634 6.634 10 C -0.117 4.117 11 C -0.188 4.188 12 C -0.101 4.101 13 C -0.231 4.231 14 C 0.066 3.934 15 C -0.514 4.514 16 H 0.086 0.914 17 C 0.026 3.974 18 N -0.802 5.802 19 Si 0.996 3.004 20 H -0.260 1.260 21 H -0.266 1.266 22 H -0.247 1.247 23 C -0.159 4.159 24 H 0.127 0.873 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.171 0.829 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.293 0.707 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 18.635 -11.302 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.515 4.515 3 C -0.228 4.228 4 S 2.439 3.561 5 C -0.768 4.768 6 O -0.984 6.984 7 N -1.019 6.019 8 C 0.370 3.630 9 O -0.520 6.520 10 C -0.122 4.122 11 C -0.207 4.207 12 C -0.119 4.119 13 C -0.251 4.251 14 C 0.064 3.936 15 C -0.542 4.542 16 H 0.104 0.896 17 C -0.195 4.195 18 N -0.425 5.425 19 Si 0.815 3.185 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.170 1.170 23 C -0.180 4.180 24 H 0.145 0.855 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.188 0.812 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.185 0.815 33 H 0.186 0.814 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.812 18.697 -11.008 22.224 hybrid contribution 0.623 -0.492 1.502 1.699 sum -4.188 18.205 -9.506 20.960 Atomic orbital electron populations 1.22162 0.86417 1.05929 1.07546 1.28755 1.08434 1.07150 1.07188 1.22262 1.02770 0.89278 1.08530 1.15192 0.76766 0.79629 0.84485 1.29795 1.15585 1.14776 1.16671 1.93462 1.31954 1.86053 1.86898 1.69716 1.66948 1.18870 1.46398 1.18085 0.76058 0.88929 0.79884 1.90909 1.41022 1.80288 1.39817 1.19637 1.02448 0.92206 0.97926 1.20887 1.03988 0.96666 0.99171 1.20940 0.99636 0.93270 0.98072 1.21393 1.04843 1.00016 0.98836 1.17913 0.90174 0.92248 0.93261 1.20922 1.45072 0.94513 0.93684 0.89623 1.28476 0.92366 0.96934 1.01688 1.69216 1.32411 1.18422 1.22424 0.85077 0.79539 0.78357 0.75539 1.18390 1.19060 1.17037 1.21595 1.02815 0.95126 0.98478 0.85457 0.90333 0.88633 0.81184 0.91014 0.84648 0.88129 0.87867 0.81543 0.81372 0.84821 0.84749 0.87483 0.89479 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.98 71.98 0.65 -0.30 16 2 C -0.39 -4.09 3.51 30.60 0.11 -3.98 16 3 C -0.17 -0.65 9.16 71.98 0.66 0.01 16 4 S 2.23 62.45 3.37 -56.49 -0.19 62.26 16 5 C -0.61 -12.76 9.94 113.37 1.13 -11.63 16 6 O -1.00 -41.16 17.26 -132.79 -2.29 -43.45 16 7 N -1.12 -43.85 9.14 -180.48 -1.65 -45.50 16 8 C 0.58 30.94 7.31 87.51 0.64 31.57 16 9 O -0.63 -37.77 14.32 10.00 0.14 -37.62 16 10 C -0.12 -6.65 5.87 -20.08 -0.12 -6.76 16 11 C -0.19 -9.17 9.59 22.73 0.22 -8.95 16 12 C -0.10 -4.73 10.01 22.18 0.22 -4.51 16 13 C -0.23 -12.20 9.80 22.85 0.22 -11.98 16 14 C 0.07 4.00 5.62 -21.30 -0.12 3.88 16 15 C -0.51 -30.28 9.32 24.96 0.23 -30.04 16 16 H 0.09 4.73 7.96 -2.91 -0.02 4.71 16 17 C 0.03 1.42 5.41 87.20 0.47 1.89 16 18 N -0.80 -46.88 10.84 23.21 0.25 -46.62 16 19 Si 1.00 41.16 29.66 68.60 2.03 43.19 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.16 -10.07 8.30 23.05 0.19 -9.88 16 24 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 26 H 0.09 0.16 6.85 -2.39 -0.02 0.15 16 27 H 0.17 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.14 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.10 -0.07 7.68 -2.39 -0.02 -0.09 16 31 H 0.10 3.25 7.06 -2.39 -0.02 3.24 16 32 H 0.17 1.81 7.85 -2.39 -0.02 1.79 16 33 H 0.17 2.17 7.07 -2.39 -0.02 2.15 16 34 H 0.13 5.59 7.53 -2.91 -0.02 5.57 16 35 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.29 15.51 8.27 -92.72 -0.77 14.74 16 38 H 0.10 6.76 5.62 -2.91 -0.02 6.74 16 Total: -1.00 -99.10 331.39 3.86 -95.24 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.06 Total: 23.20 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 4.50 Total: -50.70 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -1.40 Total: -92.13 kcal Atomic # 8 Polarization: -78.92 SS G_CDS: -2.15 Total: -81.07 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 62.45 SS G_CDS: -0.19 Total: 62.26 kcal Total: -99.10 3.86 -95.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926066087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.394 kcal (2) G-P(sol) polarization free energy of solvation -99.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds