Wall clock time and date at job start Tue Mar 31 2020 07:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 102.99850 * 2 1 4 4 H 1.09000 * 109.47059 * 305.00137 * 3 2 1 5 5 C 1.52996 * 109.47237 * 65.00132 * 3 2 1 6 6 C 1.52999 * 109.47165 * 185.00125 * 3 2 1 7 7 C 1.50701 * 109.47120 * 65.00030 * 6 3 2 8 8 O 1.21301 * 119.99948 * 359.97438 * 7 6 3 9 9 N 1.34770 * 120.00530 * 180.02562 * 7 6 3 10 10 C 1.39993 * 120.00815 * 185.21199 * 9 7 6 11 11 C 1.38916 * 120.00219 * 213.40339 * 10 9 7 12 12 C 1.38003 * 119.99482 * 179.75913 * 11 10 9 13 13 C 1.38912 * 119.99949 * 0.48957 * 12 11 10 14 14 O 1.35779 * 119.99344 * 179.74285 * 13 12 11 15 15 C 1.34815 * 116.99697 * 185.93619 * 14 13 12 16 16 H 1.08001 * 120.00428 * 5.40256 * 15 14 13 17 17 C 1.38640 * 120.00109 * 185.40822 * 15 14 13 18 18 N 1.31574 * 119.99400 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00035 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46881 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47014 * 209.99810 * 19 17 15 22 22 H 1.48502 * 109.46987 * 329.99788 * 19 17 15 23 23 C 1.38899 * 120.00674 * 359.76625 * 13 12 11 24 24 C 1.38000 * 119.99928 * 359.97438 * 23 13 12 25 25 H 1.08994 * 109.47483 * 60.00202 * 1 2 3 26 26 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46985 * 299.99587 * 1 2 3 28 28 H 1.09000 * 109.47093 * 60.00025 * 5 3 2 29 29 H 1.09001 * 109.47507 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47245 * 300.00102 * 5 3 2 31 31 H 1.08997 * 109.47228 * 305.00148 * 6 3 2 32 32 H 1.08999 * 109.47153 * 184.99841 * 6 3 2 33 33 H 0.97000 * 119.99633 * 5.20830 * 9 7 6 34 34 H 1.07998 * 120.00481 * 359.97237 * 11 10 9 35 35 H 1.08003 * 119.99849 * 180.20795 * 12 11 10 36 36 H 0.97009 * 119.99430 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.99947 * 179.97438 * 23 13 12 38 38 H 1.08008 * 119.99974 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7369 1.9413 -0.1258 7 6 4.1919 1.4271 -1.4673 8 8 3.3839 0.9665 -2.2461 9 7 5.4965 1.4780 -1.8015 10 6 5.9052 1.1025 -3.0867 11 6 7.1387 0.4913 -3.2725 12 6 7.5393 0.1167 -4.5388 13 6 6.7135 0.3601 -5.6290 14 8 7.1100 -0.0038 -6.8755 15 6 6.3205 0.3700 -7.9024 16 1 5.4665 1.0063 -7.7232 17 6 6.6046 -0.0627 -9.1885 18 7 7.6453 -0.8377 -9.4069 19 14 5.5102 0.4545 -10.6112 20 1 6.0197 1.7227 -11.1920 21 1 5.5176 -0.6048 -11.6519 22 1 4.1232 0.6568 -10.1206 23 6 5.4824 0.9761 -5.4439 24 6 5.0794 1.3459 -4.1770 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.2354 1.9150 2.1491 29 1 1.9875 3.4638 1.3072 30 1 0.6636 2.2779 1.3969 31 1 4.2339 1.3805 0.6658 32 1 3.9901 2.9977 -0.0367 33 1 6.1524 1.7749 -1.1514 34 1 7.7827 0.3061 -2.4255 35 1 8.4969 -0.3616 -4.6829 36 1 7.8444 -1.1401 -10.3069 37 1 4.8406 1.1657 -6.2916 38 1 4.1222 1.8253 -4.0331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116383853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:44 Heat of formation + Delta-G solvation = -38.158898 kcal Electronic energy + Delta-G solvation = -20625.619125 eV Core-core repulsion = 17367.272196 eV Total energy + Delta-G solvation = -3258.346930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10606 -38.65095 -36.58790 -34.72166 -33.87882 -32.14965 -30.18222 -29.60302 -28.56353 -27.14811 -25.21271 -22.94155 -22.13717 -21.20808 -19.93896 -18.10965 -17.56061 -16.84216 -16.66534 -16.35985 -15.45758 -14.63142 -14.57274 -14.45504 -14.17746 -13.72099 -13.64090 -13.53198 -13.44611 -13.01037 -12.84182 -12.69989 -12.38977 -12.23581 -11.71967 -11.64737 -11.49348 -11.48467 -11.43859 -10.96884 -10.73814 -10.41349 -9.92353 -9.68175 -9.54117 -9.21762 -8.65591 -8.17067 -7.55356 -6.87325 -6.41456 -3.98822 1.58106 2.13009 2.24355 2.47563 2.94410 3.16609 3.17401 3.22082 3.31959 4.00624 4.33657 4.51808 4.61274 4.89687 4.94885 5.00413 5.03996 5.13430 5.15590 5.22906 5.28593 5.33260 5.50283 5.61649 5.70992 5.76240 5.77875 6.18483 6.22436 6.37544 6.77082 6.89035 7.04446 7.14537 7.32636 7.47338 7.74225 7.83567 8.03714 8.45326 9.04500 9.74635 10.76690 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023239 B = 0.003086 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.582133 B = 9069.953859 C = 9781.790675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.235 6.235 3 C -0.046 4.046 4 H 0.094 0.906 5 C -0.147 4.147 6 C -0.122 4.122 7 C 0.498 3.502 8 O -0.502 6.502 9 N -0.664 5.664 10 C 0.040 3.960 11 C -0.095 4.095 12 C -0.177 4.177 13 C 0.145 3.855 14 O -0.178 6.178 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.218 4.218 24 C -0.064 4.064 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.400 0.600 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.269 0.731 37 H 0.130 0.870 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.290 7.249 20.747 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.009 6.009 3 C -0.175 4.175 4 H 0.113 0.887 5 C -0.206 4.206 6 C -0.163 4.163 7 C 0.283 3.717 8 O -0.376 6.376 9 N -0.309 5.309 10 C -0.052 4.052 11 C -0.115 4.115 12 C -0.197 4.197 13 C 0.091 3.909 14 O -0.081 6.081 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.238 4.238 24 C -0.084 4.084 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.234 0.766 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.939 5.809 19.896 22.572 hybrid contribution -1.108 1.392 -0.371 1.817 sum -10.047 7.200 19.525 23.108 Atomic orbital electron populations 1.23378 0.95160 1.06250 1.04510 1.87050 1.06382 1.09821 1.97689 1.22865 0.97763 0.95458 1.01413 0.88742 1.22108 1.01552 1.00854 0.96120 1.21506 0.94701 1.03556 0.96558 1.20500 0.82569 0.79515 0.89085 1.90788 1.52506 1.42700 1.51571 1.43238 1.08104 1.66456 1.13148 1.17229 0.96806 1.07677 0.83493 1.20349 0.95664 0.99071 0.96429 1.19990 1.00947 1.08373 0.90416 1.19403 0.91918 0.92846 0.86705 1.83989 1.46709 1.67034 1.10375 1.21319 1.10194 1.30586 0.84485 0.89111 1.25280 0.97235 0.96157 0.97864 1.70051 1.25643 1.31991 1.22176 0.85722 0.79589 0.78365 0.79838 1.19903 1.20270 1.19159 1.21083 0.98006 1.07421 0.97268 1.20679 0.98610 0.98315 0.90827 0.90520 0.88332 0.90949 0.91240 0.91596 0.92258 0.88183 0.87581 0.76606 0.86788 0.86102 0.92064 0.85265 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.45 101.05 1.06 -0.05 16 2 S -0.24 -2.85 20.24 -107.50 -2.18 -5.02 16 3 C -0.05 -0.44 2.44 -26.73 -0.07 -0.50 16 4 H 0.09 1.02 7.96 -51.92 -0.41 0.61 16 5 C -0.15 -0.96 9.10 37.16 0.34 -0.62 16 6 C -0.12 -1.09 5.18 -27.88 -0.14 -1.23 16 7 C 0.50 6.88 7.28 -10.99 -0.08 6.80 16 8 O -0.50 -9.09 12.50 5.54 0.07 -9.02 16 9 N -0.66 -9.00 5.34 -9.82 -0.05 -9.06 16 10 C 0.04 0.72 6.28 -83.63 -0.52 0.20 16 11 C -0.09 -1.69 9.96 -39.42 -0.39 -2.08 16 12 C -0.18 -3.76 9.98 -39.42 -0.39 -4.16 16 13 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 14 O -0.18 -5.15 9.76 0.00 0.00 -5.15 16 15 C -0.39 -11.10 9.44 30.88 0.29 -10.81 16 16 H 0.09 2.41 5.29 -52.49 -0.28 2.13 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 19 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 C -0.22 -5.01 9.12 -39.42 -0.36 -5.37 16 24 C -0.06 -1.31 8.65 -39.42 -0.34 -1.65 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.07 0.50 7.14 -51.92 -0.37 0.13 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 6.92 -51.93 -0.36 0.01 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.82 8.82 -40.82 -0.36 3.46 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 3.00 5.71 -52.49 -0.30 2.70 16 38 H 0.12 2.37 6.44 -52.48 -0.34 2.03 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -34.16 333.95 -7.30 -41.45 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.94 Total: 5.91 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.97 Total: -15.17 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.71 Total: -33.95 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.18 Total: -5.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.16 -7.30 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116383853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.294 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds