Wall clock time and date at job start Tue Mar 31 2020 07:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 102.99850 * 2 1 4 4 H 1.09000 * 109.47059 * 305.00137 * 3 2 1 5 5 C 1.52996 * 109.47237 * 65.00132 * 3 2 1 6 6 C 1.52999 * 109.47165 * 185.00125 * 3 2 1 7 7 C 1.50701 * 109.47120 * 65.00030 * 6 3 2 8 8 O 1.21301 * 119.99948 * 359.97438 * 7 6 3 9 9 N 1.34770 * 120.00530 * 180.02562 * 7 6 3 10 10 C 1.39993 * 120.00815 * 185.21199 * 9 7 6 11 11 C 1.38916 * 120.00219 * 213.40339 * 10 9 7 12 12 C 1.38003 * 119.99482 * 179.75913 * 11 10 9 13 13 C 1.38912 * 119.99949 * 0.48957 * 12 11 10 14 14 O 1.35779 * 119.99344 * 179.74285 * 13 12 11 15 15 C 1.34815 * 116.99697 * 185.93619 * 14 13 12 16 16 H 1.08001 * 120.00428 * 5.40256 * 15 14 13 17 17 C 1.38640 * 120.00109 * 185.40822 * 15 14 13 18 18 N 1.31574 * 119.99400 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00035 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46881 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47014 * 209.99810 * 19 17 15 22 22 H 1.48502 * 109.46987 * 329.99788 * 19 17 15 23 23 C 1.38899 * 120.00674 * 359.76625 * 13 12 11 24 24 C 1.38000 * 119.99928 * 359.97438 * 23 13 12 25 25 H 1.08994 * 109.47483 * 60.00202 * 1 2 3 26 26 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46985 * 299.99587 * 1 2 3 28 28 H 1.09000 * 109.47093 * 60.00025 * 5 3 2 29 29 H 1.09001 * 109.47507 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47245 * 300.00102 * 5 3 2 31 31 H 1.08997 * 109.47228 * 305.00148 * 6 3 2 32 32 H 1.08999 * 109.47153 * 184.99841 * 6 3 2 33 33 H 0.97000 * 119.99633 * 5.20830 * 9 7 6 34 34 H 1.07998 * 120.00481 * 359.97237 * 11 10 9 35 35 H 1.08003 * 119.99849 * 180.20795 * 12 11 10 36 36 H 0.97009 * 119.99430 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.99947 * 179.97438 * 23 13 12 38 38 H 1.08008 * 119.99974 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7369 1.9413 -0.1258 7 6 4.1919 1.4271 -1.4673 8 8 3.3839 0.9665 -2.2461 9 7 5.4965 1.4780 -1.8015 10 6 5.9052 1.1025 -3.0867 11 6 7.1387 0.4913 -3.2725 12 6 7.5393 0.1167 -4.5388 13 6 6.7135 0.3601 -5.6290 14 8 7.1100 -0.0038 -6.8755 15 6 6.3205 0.3700 -7.9024 16 1 5.4665 1.0063 -7.7232 17 6 6.6046 -0.0627 -9.1885 18 7 7.6453 -0.8377 -9.4069 19 14 5.5102 0.4545 -10.6112 20 1 6.0197 1.7227 -11.1920 21 1 5.5176 -0.6048 -11.6519 22 1 4.1232 0.6568 -10.1206 23 6 5.4824 0.9761 -5.4439 24 6 5.0794 1.3459 -4.1770 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.2354 1.9150 2.1491 29 1 1.9875 3.4638 1.3072 30 1 0.6636 2.2779 1.3969 31 1 4.2339 1.3805 0.6658 32 1 3.9901 2.9977 -0.0367 33 1 6.1524 1.7749 -1.1514 34 1 7.7827 0.3061 -2.4255 35 1 8.4969 -0.3616 -4.6829 36 1 7.8444 -1.1401 -10.3069 37 1 4.8406 1.1657 -6.2916 38 1 4.1222 1.8253 -4.0331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116383853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:44 Heat of formation + Delta-G solvation = -60.962937 kcal Electronic energy + Delta-G solvation = -20626.607983 eV Core-core repulsion = 17367.272196 eV Total energy + Delta-G solvation = -3259.335787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44801 -40.33086 -38.22195 -35.53408 -35.30180 -34.15640 -31.86154 -30.54517 -29.61782 -28.29826 -27.17165 -24.17537 -23.58527 -22.51304 -21.18030 -19.95172 -19.16548 -18.12744 -17.87880 -17.56553 -16.59192 -16.25778 -16.02963 -15.68348 -15.47932 -15.18463 -15.14500 -14.69128 -14.52938 -14.32029 -14.14996 -13.68831 -13.57308 -13.25930 -13.21916 -13.09074 -12.85752 -12.64250 -12.47856 -12.31924 -12.14927 -12.13997 -11.34969 -11.12667 -10.82011 -10.66999 -10.48319 -9.83276 -8.58594 -8.47537 -8.44125 -6.13951 0.52455 0.57052 0.82648 1.34042 1.42333 1.51450 1.71673 1.77681 2.16885 2.20943 2.83045 3.16357 3.51401 3.59236 3.73802 4.08040 4.12136 4.23861 4.27575 4.30748 4.35035 4.49018 4.58335 4.63839 4.68465 4.76047 4.81933 4.88755 5.02350 5.07447 5.14460 5.28914 5.35763 5.45980 5.62087 5.70915 6.01864 6.19161 6.62811 6.97369 7.35128 7.77569 8.75686 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023239 B = 0.003086 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.582133 B = 9069.953859 C = 9781.790675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.316 6.316 3 C -0.033 4.033 4 H 0.077 0.923 5 C -0.140 4.140 6 C -0.112 4.112 7 C 0.494 3.506 8 O -0.547 6.547 9 N -0.654 5.654 10 C 0.069 3.931 11 C -0.082 4.082 12 C -0.180 4.180 13 C 0.104 3.896 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.096 0.904 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.016 2.984 20 H -0.260 1.260 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.227 4.227 24 C -0.076 4.076 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.425 0.575 34 H 0.165 0.835 35 H 0.127 0.873 36 H 0.273 0.727 37 H 0.115 0.885 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 9.105 24.095 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.090 6.090 3 C -0.162 4.162 4 H 0.095 0.905 5 C -0.199 4.199 6 C -0.152 4.152 7 C 0.282 3.718 8 O -0.424 6.424 9 N -0.301 5.301 10 C -0.025 4.025 11 C -0.102 4.102 12 C -0.200 4.200 13 C 0.053 3.947 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.113 0.887 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.836 3.164 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.247 4.247 24 C -0.096 4.096 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.264 0.736 34 H 0.183 0.817 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.821 7.703 23.346 26.474 hybrid contribution -0.908 0.880 -1.013 1.620 sum -10.729 8.584 22.334 26.222 Atomic orbital electron populations 1.23359 0.92148 1.06831 1.05355 1.87242 1.10054 1.13856 1.97859 1.22925 0.98110 0.92614 1.02563 0.90455 1.22063 1.01722 1.01788 0.94279 1.21611 0.94216 1.05897 0.93507 1.21473 0.81782 0.78113 0.90409 1.90790 1.53674 1.44456 1.53462 1.43229 1.09108 1.66104 1.11708 1.17389 0.95822 1.04333 0.84935 1.20786 0.95977 0.97000 0.96419 1.20330 1.00822 1.07967 0.90868 1.19922 0.93518 0.94682 0.86543 1.83945 1.48210 1.69595 1.11788 1.21752 1.10534 1.31312 0.85333 0.88650 1.26540 0.98785 0.96003 1.00541 1.70184 1.28117 1.34363 1.23060 0.84623 0.77614 0.78454 0.75743 1.18506 1.19369 1.18165 1.21076 0.97583 1.07915 0.98158 1.20765 0.99331 0.98840 0.90655 0.90999 0.87982 0.88668 0.90485 0.89421 0.92069 0.85870 0.83592 0.73603 0.81718 0.85469 0.91782 0.86751 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.45 113.37 1.19 -0.60 16 2 S -0.32 -7.23 20.24 -56.49 -1.14 -8.38 16 3 C -0.03 -0.54 2.44 30.59 0.07 -0.46 16 4 H 0.08 1.52 7.96 -2.39 -0.02 1.50 16 5 C -0.14 -1.26 9.10 71.98 0.66 -0.60 16 6 C -0.11 -1.51 5.18 29.85 0.15 -1.35 16 7 C 0.49 12.15 7.28 87.66 0.64 12.79 16 8 O -0.55 -19.17 12.50 -3.09 -0.04 -19.20 16 9 N -0.65 -15.12 5.34 -303.37 -1.62 -16.74 16 10 C 0.07 2.31 6.28 38.16 0.24 2.55 16 11 C -0.08 -2.68 9.96 22.38 0.22 -2.46 16 12 C -0.18 -7.62 9.98 22.38 0.22 -7.39 16 13 C 0.10 5.35 6.65 22.59 0.15 5.51 16 14 O -0.23 -14.11 9.76 -22.91 -0.22 -14.33 16 15 C -0.41 -24.93 9.44 67.92 0.64 -24.28 16 16 H 0.10 5.39 5.29 -2.91 -0.02 5.38 16 17 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 18 N -0.92 -57.38 13.67 21.61 0.30 -57.09 16 19 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 C -0.23 -10.88 9.12 22.37 0.20 -10.68 16 24 C -0.08 -3.07 8.65 22.38 0.19 -2.88 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.09 1.10 7.14 -2.39 -0.02 1.09 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.55 6.92 -2.39 -0.02 0.53 16 31 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.43 5.79 8.82 -92.71 -0.82 4.97 16 34 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 36 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 37 H 0.11 5.67 5.71 -2.91 -0.02 5.65 16 38 H 0.12 4.86 6.44 -2.91 -0.02 4.84 16 Total: -1.00 -81.56 333.95 4.61 -76.95 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.27 Total: 23.07 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 5.05 Total: -30.63 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.32 Total: -73.83 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.26 Total: -33.54 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -1.14 Total: -8.38 kcal Total: -81.56 4.61 -76.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116383853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.992 kcal (2) G-P(sol) polarization free energy of solvation -81.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds