Wall clock time and date at job start Tue Mar 31 2020 07:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20821 * 120.00188 * 2 1 4 4 O 1.34233 * 119.99743 * 180.02562 * 2 1 3 5 5 C 1.45196 * 116.99846 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47563 * 330.00000 * 5 4 2 7 7 C 1.53000 * 109.47153 * 90.00357 * 5 4 2 8 8 C 1.50700 * 109.47092 * 209.99952 * 5 4 2 9 9 O 1.21290 * 120.00376 * 355.00373 * 8 5 4 10 10 N 1.34786 * 119.99952 * 175.00045 * 8 5 4 11 11 C 1.40005 * 119.99895 * 175.47557 * 10 8 5 12 12 C 1.39368 * 119.90876 * 215.50922 * 11 10 8 13 13 C 1.38363 * 120.46591 * 179.73862 * 12 11 10 14 14 C 1.38010 * 120.29459 * 0.28575 * 13 12 11 15 15 F 1.35093 * 120.09917 * 179.97438 * 14 13 12 16 16 C 1.41006 * 119.80878 * 359.96751 * 14 13 12 17 17 C 1.41295 * 120.23083 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99582 * 24.72915 * 17 16 14 19 19 C 1.39921 * 119.99989 * 204.72585 * 17 16 14 20 20 N 1.30848 * 120.00132 * 15.37017 * 19 17 16 21 21 Si 1.86796 * 119.99829 * 195.36452 * 19 17 16 22 22 H 1.48501 * 109.47254 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47216 * 120.00164 * 21 19 17 24 24 H 1.48496 * 109.47344 * 240.00460 * 21 19 17 25 25 C 1.38141 * 119.91350 * 35.76204 * 11 10 8 26 26 H 1.09008 * 109.47199 * 239.99829 * 1 2 3 27 27 H 1.09007 * 109.46986 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47597 * 119.99910 * 1 2 3 29 29 H 1.09005 * 109.47320 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.46701 * 299.99773 * 7 5 4 31 31 H 1.08991 * 109.47457 * 59.99636 * 7 5 4 32 32 H 0.96991 * 119.99545 * 355.47154 * 10 8 5 33 33 H 1.07999 * 119.76385 * 0.02562 * 12 11 10 34 34 H 1.08005 * 119.85275 * 180.25019 * 13 12 11 35 35 H 0.96999 * 120.00325 * 179.97438 * 20 19 17 36 36 H 1.08004 * 120.14743 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 -0.0011 6 1 3.9442 -0.1787 -0.5148 7 6 4.1379 -1.0603 1.4412 8 6 4.1938 -2.2889 -0.7119 9 8 3.4545 -3.1717 -1.0929 10 7 5.5215 -2.3832 -0.9245 11 6 6.0578 -3.5417 -1.4993 12 6 7.3074 -4.0051 -1.0919 13 6 7.8460 -5.1517 -1.6484 14 6 7.1529 -5.8465 -2.6187 15 9 7.6827 -6.9653 -3.1597 16 6 5.8899 -5.3854 -3.0436 17 6 5.1723 -6.0901 -4.0360 18 1 5.3552 -7.1435 -4.1891 19 6 4.2246 -5.4233 -4.8203 20 7 4.2081 -4.1154 -4.8556 21 14 2.9832 -6.4003 -5.8171 22 1 3.2115 -7.8524 -5.6059 23 1 1.6088 -6.0471 -5.3793 24 1 3.1419 -6.0783 -7.2580 25 6 5.3493 -4.2194 -2.4725 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 5.2265 -1.0028 1.4409 30 1 3.7287 -0.1906 1.9554 31 1 3.8219 -1.9681 1.9550 32 1 6.1052 -1.6485 -0.6792 33 1 7.8572 -3.4680 -0.3332 34 1 8.8135 -5.5043 -1.3224 35 1 3.5514 -3.6532 -5.3996 36 1 4.3826 -3.8577 -2.7904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144162107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:38 Heat of formation + Delta-G solvation = -170.155562 kcal Electronic energy + Delta-G solvation = -23449.577416 eV Core-core repulsion = 19619.293505 eV Total energy + Delta-G solvation = -3830.283911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.17617 -41.97087 -40.98199 -38.93576 -37.59058 -36.20460 -35.13992 -33.30590 -31.70531 -30.89096 -29.61107 -27.38541 -25.91583 -23.74390 -23.02990 -21.99016 -21.26294 -19.79580 -18.90705 -18.57993 -17.96570 -17.69259 -17.38571 -16.85131 -16.76959 -16.39153 -15.97644 -15.93236 -15.21046 -14.75997 -14.60409 -14.41468 -14.20274 -13.77723 -13.63984 -13.50783 -13.47115 -13.39215 -13.17351 -12.91042 -12.81115 -12.70738 -12.30178 -12.14023 -11.98722 -11.68991 -11.64342 -11.27181 -10.91858 -10.58833 -9.50911 -8.82989 -8.65581 -6.46359 0.59684 0.89768 1.07060 1.31537 1.32438 1.38922 1.48057 1.57660 2.15179 2.30922 2.62284 3.41879 3.52491 3.64628 3.80071 3.83213 4.05253 4.32571 4.41726 4.54471 4.59817 4.62539 4.64769 4.90241 4.94089 5.00501 5.03469 5.08769 5.20624 5.37100 5.60665 5.71261 5.75512 6.05951 6.17883 6.46920 6.50776 6.63794 6.76237 6.85586 7.18966 8.21937 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.005057 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.004498 B = 5535.352742 C = 7181.995731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.456 3.544 3 O -0.543 6.543 4 O -0.348 6.348 5 C 0.077 3.923 6 H 0.120 0.880 7 C -0.155 4.155 8 C 0.503 3.497 9 O -0.545 6.545 10 N -0.645 5.645 11 C 0.135 3.865 12 C -0.217 4.217 13 C -0.103 4.103 14 C -0.072 4.072 15 F -0.170 7.170 16 C 0.060 3.940 17 C -0.490 4.490 18 H 0.072 0.928 19 C 0.034 3.966 20 N -0.813 5.813 21 Si 0.983 3.017 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.257 1.257 25 C -0.168 4.168 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.424 0.576 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.288 0.712 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 10.257 10.536 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.302 3.698 3 O -0.433 6.433 4 O -0.264 6.264 5 C 0.019 3.981 6 H 0.137 0.863 7 C -0.213 4.213 8 C 0.290 3.710 9 O -0.420 6.420 10 N -0.292 5.292 11 C 0.042 3.958 12 C -0.238 4.238 13 C -0.123 4.123 14 C -0.092 4.092 15 F -0.150 7.150 16 C 0.056 3.944 17 C -0.519 4.519 18 H 0.090 0.910 19 C -0.182 4.182 20 N -0.438 5.438 21 Si 0.803 3.197 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.181 1.181 25 C -0.190 4.190 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.263 0.737 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.099 0.901 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.754 10.125 10.172 15.119 hybrid contribution 0.047 -0.343 -0.792 0.865 sum -4.707 9.782 9.379 14.346 Atomic orbital electron populations 1.21812 0.83122 1.07400 1.07423 1.24916 0.93886 0.80530 0.70487 1.90648 1.71647 1.33571 1.47459 1.86667 1.20427 1.35817 1.83451 1.22486 0.78734 0.96640 1.00236 0.86273 1.22164 1.03951 1.04229 0.90913 1.20854 0.82621 0.88169 0.79382 1.90789 1.59205 1.41950 1.50086 1.43032 1.07228 1.17996 1.60984 1.17720 0.94718 0.89141 0.94196 1.20364 0.96861 0.99839 1.06771 1.20674 0.99896 0.95728 0.95955 1.18244 0.95497 0.90107 1.05369 1.91228 1.86281 1.51211 1.86260 1.17897 0.90161 0.93439 0.92922 1.19719 1.19221 0.97154 1.15827 0.90962 1.26763 0.98360 0.95906 0.97132 1.69832 1.31376 1.09899 1.32694 0.85142 0.77323 0.79287 0.77933 1.18187 1.18873 1.18118 1.21385 1.01923 0.98730 0.96921 0.85867 0.86292 0.87212 0.87318 0.89540 0.91238 0.73669 0.83027 0.84113 0.90096 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.43 71.24 0.74 -1.20 16 2 C 0.46 11.07 8.04 71.24 0.57 11.65 16 3 O -0.54 -15.43 16.30 21.98 0.36 -15.07 16 4 O -0.35 -10.24 9.42 -45.10 -0.42 -10.66 16 5 C 0.08 2.12 2.97 29.85 0.09 2.21 16 6 H 0.12 3.00 7.16 -2.39 -0.02 2.98 16 7 C -0.16 -2.99 9.50 71.98 0.68 -2.31 16 8 C 0.50 18.60 7.02 87.66 0.62 19.22 16 9 O -0.54 -26.56 13.98 15.69 0.22 -26.34 16 10 N -0.64 -21.89 5.30 -303.60 -1.61 -23.50 16 11 C 0.14 5.95 6.28 38.08 0.24 6.19 16 12 C -0.22 -8.37 9.97 22.57 0.22 -8.15 16 13 C -0.10 -4.39 10.00 22.25 0.22 -4.17 16 14 C -0.07 -3.75 7.31 22.89 0.17 -3.58 16 15 F -0.17 -8.93 16.71 44.97 0.75 -8.17 16 16 C 0.06 3.42 5.58 -21.26 -0.12 3.30 16 17 C -0.49 -28.63 8.79 23.43 0.21 -28.42 16 18 H 0.07 4.19 7.72 -2.91 -0.02 4.17 16 19 C 0.03 1.84 5.19 85.25 0.44 2.28 16 20 N -0.81 -44.81 10.83 21.82 0.24 -44.58 16 21 Si 0.98 41.13 29.59 68.60 2.03 43.16 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 C -0.17 -9.17 7.32 22.83 0.17 -9.00 16 26 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.12 1.23 8.12 -2.38 -0.02 1.21 16 28 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.11 1.51 8.08 -2.38 -0.02 1.49 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.42 9.97 8.76 -92.72 -0.81 9.16 16 33 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.14 4.93 8.06 -2.91 -0.02 4.90 16 35 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 36 H 0.13 7.67 4.28 -2.91 -0.01 7.65 16 Total: -1.00 -77.59 322.95 6.14 -71.45 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.32 Total: 25.70 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.25 Total: -11.99 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -1.37 Total: -68.08 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: 0.15 Total: -52.07 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.75 Total: -8.17 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -77.59 6.14 -71.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144162107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.701 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds