Wall clock time and date at job start Tue Mar 31 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 H 1.09003 * 109.47115 * 305.52113 * 3 2 1 5 5 C 1.50708 * 109.46850 * 185.52775 * 3 2 1 6 6 H 1.07996 * 119.99542 * 245.60295 * 5 3 2 7 7 C 1.37877 * 120.00149 * 65.59835 * 5 3 2 8 8 N 1.31507 * 119.99941 * 195.95843 * 7 5 3 9 9 Si 1.86797 * 119.99864 * 16.23845 * 7 5 3 10 10 H 1.48502 * 109.47177 * 179.72464 * 9 7 5 11 11 H 1.48499 * 109.47237 * 299.72296 * 9 7 5 12 12 H 1.48497 * 109.47254 * 59.72146 * 9 7 5 13 13 N 1.46492 * 109.47365 * 65.52619 * 3 2 1 14 14 C 1.38386 * 120.00388 * 275.00168 * 13 3 2 15 15 N 1.32899 * 120.75558 * 359.97438 * 14 13 3 16 16 C 1.32159 * 121.17841 * 180.02562 * 15 14 13 17 17 Cl 1.73597 * 118.79089 * 180.02562 * 16 15 14 18 18 N 1.31772 * 122.42502 * 0.02677 * 16 15 14 19 19 C 1.32902 * 120.62950 * 359.97352 * 18 16 15 20 20 N 1.37195 * 134.90474 * 180.02562 * 19 18 16 21 21 H 0.97003 * 126.27560 * 359.97438 * 20 19 18 22 22 C 1.36341 * 107.44581 * 179.97438 * 20 19 18 23 23 C 1.50702 * 125.01486 * 180.02562 * 22 20 19 24 24 N 1.30132 * 109.97578 * 0.02562 * 22 20 19 25 25 C 1.35505 * 109.43749 * 359.73210 * 24 22 20 26 26 H 1.09002 * 109.46757 * 299.99925 * 1 2 3 27 27 H 1.09000 * 109.46794 * 59.99685 * 1 2 3 28 28 H 1.08995 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46757 * 240.00075 * 2 1 3 30 30 H 1.09000 * 109.46794 * 120.00315 * 2 1 3 31 31 H 0.97000 * 119.99960 * 355.13527 * 8 7 5 32 32 H 0.97005 * 120.00182 * 94.99390 * 13 3 2 33 33 H 1.08997 * 109.46746 * 90.00273 * 23 22 20 34 34 H 1.09003 * 109.47122 * 210.00223 * 23 22 20 35 35 H 1.09001 * 109.46772 * 330.00487 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5409 1.4446 -0.1369 6 1 4.1565 1.8042 0.6743 7 6 4.1280 0.9875 -1.2976 8 7 5.4093 0.6917 -1.3142 9 14 3.1051 0.7957 -2.8488 10 1 3.9664 0.2982 -3.9514 11 1 2.0080 -0.1742 -2.6016 12 1 2.5275 2.1105 -3.2266 13 7 1.6634 2.0936 1.2570 14 6 0.4146 2.6754 1.3879 15 7 -0.4545 2.6525 0.3828 16 6 -1.6491 3.2058 0.4985 17 17 -2.7359 3.1393 -0.8535 18 7 -2.0457 3.8063 1.6024 19 6 -1.2438 3.8781 2.6598 20 7 -1.3466 4.4136 3.9187 21 1 -2.1141 4.8824 4.2821 22 6 -0.1721 4.1659 4.5654 23 6 0.1415 4.5838 5.9790 24 7 0.6382 3.5155 3.7820 25 6 0.0348 3.2997 2.5880 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.9563 0.8614 -0.5313 32 1 2.2893 2.1170 1.9978 33 1 -0.1617 3.7945 6.6668 34 1 1.2128 4.7593 6.0768 35 1 -0.3999 5.4997 6.2156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:23 Heat of formation + Delta-G solvation = 90.449214 kcal Electronic energy + Delta-G solvation = -21575.022343 eV Core-core repulsion = 18248.960981 eV Total energy + Delta-G solvation = -3326.061362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.43922 -39.31046 -37.07764 -36.35193 -33.89683 -32.45138 -32.17903 -31.63834 -30.74623 -28.07088 -26.63939 -23.64773 -22.97800 -22.29231 -21.04618 -20.11183 -19.19690 -17.75548 -17.61737 -16.77571 -16.15939 -15.45230 -15.00800 -14.70550 -14.35307 -13.74473 -13.59080 -13.30641 -12.91211 -12.83127 -12.62645 -12.34037 -12.12791 -11.55824 -11.53824 -11.26160 -11.10133 -10.93965 -10.71334 -10.51070 -10.26687 -9.95589 -9.68713 -9.52690 -9.13374 -8.84937 -8.82085 -8.37164 -7.33646 -6.60922 -4.25964 0.91607 1.50083 1.56191 2.59825 2.66957 3.37148 3.43924 3.54867 3.64830 3.96945 4.01947 4.39696 4.50534 4.66658 4.80825 5.04975 5.13952 5.21442 5.48919 5.63377 5.73850 6.03459 6.07239 6.20376 6.32567 6.60321 6.75399 6.80935 6.93976 6.95253 7.15629 7.33311 7.48321 7.66017 7.79176 8.09074 8.22887 8.47095 8.75471 9.43457 10.79770 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.005942 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.876022 B = 4710.764918 C = 6136.417546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.139 4.139 3 C 0.245 3.755 4 H 0.052 0.948 5 C -0.620 4.620 6 H 0.062 0.938 7 C 0.042 3.958 8 N -0.896 5.896 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.278 1.278 13 N -0.641 5.641 14 C 0.522 3.478 15 N -0.568 5.568 16 C 0.437 3.563 17 Cl 0.019 6.981 18 N -0.572 5.572 19 C 0.315 3.685 20 N -0.576 5.576 21 H 0.426 0.574 22 C 0.254 3.746 23 C -0.068 4.068 24 N -0.446 5.446 25 C -0.116 4.116 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.415 0.585 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 6.544 10.605 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.142 3.858 4 H 0.070 0.930 5 C -0.658 4.658 6 H 0.081 0.919 7 C -0.165 4.165 8 N -0.529 5.529 9 Si 0.866 3.134 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.204 1.204 13 N -0.264 5.264 14 C 0.267 3.733 15 N -0.303 5.303 16 C 0.138 3.862 17 Cl 0.047 6.953 18 N -0.304 5.304 19 C 0.074 3.926 20 N -0.192 5.192 21 H 0.265 0.735 22 C -0.014 4.014 23 C -0.127 4.127 24 N -0.167 5.167 25 C -0.244 4.244 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.085 5.562 8.185 17.214 hybrid contribution -0.642 1.117 2.441 2.760 sum -14.727 6.679 10.626 19.349 Atomic orbital electron populations 1.21881 0.97297 0.98900 1.01711 1.22370 0.93907 0.99372 1.02100 1.19339 0.96177 0.88862 0.81423 0.93008 1.22073 0.89387 1.49884 1.04431 0.91944 1.25677 0.97503 0.92245 1.01104 1.70870 1.06954 1.40755 1.34277 0.84140 0.75552 0.77899 0.75816 1.20911 1.19278 1.20377 1.45482 1.09791 1.52425 1.18690 1.17681 0.86757 0.84572 0.84316 1.67710 1.03469 1.28675 1.30427 1.21938 0.87243 0.89787 0.87190 1.98404 1.60591 1.96548 1.39790 1.66425 1.37161 1.27891 0.98947 1.18197 0.91652 0.95759 0.86974 1.42511 1.17274 1.49386 1.10033 0.73467 1.23498 0.81571 0.99323 0.96969 1.20298 1.04557 1.01796 0.86037 1.70138 1.29681 1.16169 1.00668 1.19663 0.95844 1.12866 0.96049 0.94220 0.92188 0.94978 0.90852 0.93081 0.92030 0.74723 0.89514 0.88435 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.46 37.16 0.31 -2.42 16 2 C -0.14 -3.02 5.28 -26.73 -0.14 -3.16 16 3 C 0.25 5.71 1.82 -69.08 -0.13 5.58 16 4 H 0.05 1.27 6.25 -51.93 -0.32 0.95 16 5 C -0.62 -16.58 9.01 -34.44 -0.31 -16.89 16 6 H 0.06 1.78 7.96 -52.49 -0.42 1.36 16 7 C 0.04 1.15 5.32 -17.82 -0.09 1.06 16 8 N -0.90 -26.45 13.70 55.43 0.76 -25.69 16 9 Si 1.04 24.48 26.27 -169.99 -4.46 20.02 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -5.80 5.67 56.52 0.32 -5.48 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.64 -13.49 5.14 -54.73 -0.28 -13.77 16 14 C 0.52 10.41 6.11 -154.67 -0.94 9.46 16 15 N -0.57 -11.20 6.58 -10.68 -0.07 -11.27 16 16 C 0.44 7.82 8.16 -91.86 -0.75 7.07 16 17 Cl 0.02 0.29 29.25 -51.86 -1.52 -1.23 16 18 N -0.57 -9.83 10.43 -10.96 -0.11 -9.95 16 19 C 0.32 5.18 8.51 -155.80 -1.33 3.85 16 20 N -0.58 -6.82 6.20 -9.47 -0.06 -6.88 16 21 H 0.43 3.38 8.96 -40.82 -0.37 3.01 16 22 C 0.25 3.05 8.09 -154.52 -1.25 1.80 16 23 C -0.07 -0.45 10.51 36.01 0.38 -0.07 16 24 N -0.45 -7.28 11.28 -8.03 -0.09 -7.37 16 25 C -0.12 -2.11 7.16 -84.53 -0.61 -2.72 16 26 H 0.04 0.78 5.58 -51.93 -0.29 0.49 16 27 H 0.06 1.17 7.73 -51.93 -0.40 0.77 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.66 4.73 -51.93 -0.25 1.41 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.27 7.91 8.73 -40.82 -0.36 7.56 16 32 H 0.42 8.50 8.55 -40.82 -0.35 8.15 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -31.25 306.36 -9.82 -41.06 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.74 Total: 6.89 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -4.86 Total: 3.56 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: 0.14 Total: -74.93 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.46 Total: 20.02 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.25 -9.82 -41.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.514 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds