Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 H 1.09003 * 109.47115 * 305.52113 * 3 2 1 5 5 C 1.50708 * 109.46850 * 185.52775 * 3 2 1 6 6 H 1.07996 * 119.99542 * 245.60295 * 5 3 2 7 7 C 1.37877 * 120.00149 * 65.59835 * 5 3 2 8 8 N 1.31507 * 119.99941 * 195.95843 * 7 5 3 9 9 Si 1.86797 * 119.99864 * 16.23845 * 7 5 3 10 10 H 1.48502 * 109.47177 * 179.72464 * 9 7 5 11 11 H 1.48499 * 109.47237 * 299.72296 * 9 7 5 12 12 H 1.48497 * 109.47254 * 59.72146 * 9 7 5 13 13 N 1.46492 * 109.47365 * 65.52619 * 3 2 1 14 14 C 1.38386 * 120.00388 * 275.00168 * 13 3 2 15 15 N 1.32899 * 120.75558 * 359.97438 * 14 13 3 16 16 C 1.32159 * 121.17841 * 180.02562 * 15 14 13 17 17 Cl 1.73597 * 118.79089 * 180.02562 * 16 15 14 18 18 N 1.31772 * 122.42502 * 0.02677 * 16 15 14 19 19 C 1.32902 * 120.62950 * 359.97352 * 18 16 15 20 20 N 1.37195 * 134.90474 * 180.02562 * 19 18 16 21 21 H 0.97003 * 126.27560 * 359.97438 * 20 19 18 22 22 C 1.36341 * 107.44581 * 179.97438 * 20 19 18 23 23 C 1.50702 * 125.01486 * 180.02562 * 22 20 19 24 24 N 1.30132 * 109.97578 * 0.02562 * 22 20 19 25 25 C 1.35505 * 109.43749 * 359.73210 * 24 22 20 26 26 H 1.09002 * 109.46757 * 299.99925 * 1 2 3 27 27 H 1.09000 * 109.46794 * 59.99685 * 1 2 3 28 28 H 1.08995 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46757 * 240.00075 * 2 1 3 30 30 H 1.09000 * 109.46794 * 120.00315 * 2 1 3 31 31 H 0.97000 * 119.99960 * 355.13527 * 8 7 5 32 32 H 0.97005 * 120.00182 * 94.99390 * 13 3 2 33 33 H 1.08997 * 109.46746 * 90.00273 * 23 22 20 34 34 H 1.09003 * 109.47122 * 210.00223 * 23 22 20 35 35 H 1.09001 * 109.46772 * 330.00487 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5409 1.4446 -0.1369 6 1 4.1565 1.8042 0.6743 7 6 4.1280 0.9875 -1.2976 8 7 5.4093 0.6917 -1.3142 9 14 3.1051 0.7957 -2.8488 10 1 3.9664 0.2982 -3.9514 11 1 2.0080 -0.1742 -2.6016 12 1 2.5275 2.1105 -3.2266 13 7 1.6634 2.0936 1.2570 14 6 0.4146 2.6754 1.3879 15 7 -0.4545 2.6525 0.3828 16 6 -1.6491 3.2058 0.4985 17 17 -2.7359 3.1393 -0.8535 18 7 -2.0457 3.8063 1.6024 19 6 -1.2438 3.8781 2.6598 20 7 -1.3466 4.4136 3.9187 21 1 -2.1141 4.8824 4.2821 22 6 -0.1721 4.1659 4.5654 23 6 0.1415 4.5838 5.9790 24 7 0.6382 3.5155 3.7820 25 6 0.0348 3.2997 2.5880 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.9563 0.8614 -0.5313 32 1 2.2893 2.1170 1.9978 33 1 -0.1617 3.7945 6.6668 34 1 1.2128 4.7593 6.0768 35 1 -0.3999 5.4997 6.2156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = 69.785526 kcal Electronic energy + Delta-G solvation = -21575.918388 eV Core-core repulsion = 18248.960981 eV Total energy + Delta-G solvation = -3326.957407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.64228 -40.63703 -38.58696 -37.69390 -35.48957 -34.17823 -33.38435 -33.13321 -31.88668 -29.51398 -28.16487 -25.04367 -24.41144 -23.98805 -22.16774 -21.77060 -20.60798 -19.59235 -18.90762 -18.19628 -17.41663 -16.94917 -16.43911 -16.15673 -15.66906 -15.31726 -14.88420 -14.63611 -14.43452 -14.23879 -13.84675 -13.57934 -13.44814 -13.07071 -12.78063 -12.65771 -12.49962 -12.43029 -12.28078 -12.24134 -11.80431 -11.49856 -11.38491 -11.10261 -10.85301 -10.48077 -10.27893 -10.21139 -8.90203 -8.67625 -6.46082 -0.36748 0.18263 0.22788 1.48728 1.51863 1.54699 1.57346 1.72588 2.12374 2.44316 2.64598 2.89024 3.01982 3.28054 3.40039 3.76712 4.13372 4.34130 4.41064 4.45284 4.56414 4.72598 4.76114 4.83465 5.04935 5.13055 5.16613 5.25285 5.28247 5.49131 5.54949 5.64697 5.92561 6.08111 6.15856 6.48786 6.60343 6.65250 7.04209 7.30936 8.58595 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.005942 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.876022 B = 4710.764918 C = 6136.417546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.134 4.134 3 C 0.257 3.743 4 H 0.043 0.957 5 C -0.617 4.617 6 H 0.031 0.969 7 C -0.003 4.003 8 N -0.928 5.928 9 Si 1.071 2.929 10 H -0.285 1.285 11 H -0.236 1.236 12 H -0.268 1.268 13 N -0.657 5.657 14 C 0.505 3.495 15 N -0.582 5.582 16 C 0.418 3.582 17 Cl 0.041 6.959 18 N -0.562 5.562 19 C 0.302 3.698 20 N -0.557 5.557 21 H 0.447 0.553 22 C 0.286 3.714 23 C -0.069 4.069 24 N -0.493 5.493 25 C -0.129 4.129 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.256 0.744 32 H 0.413 0.587 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.324 7.410 12.006 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C 0.152 3.848 4 H 0.060 0.940 5 C -0.655 4.655 6 H 0.049 0.951 7 C -0.204 4.204 8 N -0.563 5.563 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.160 1.160 12 H -0.193 1.193 13 N -0.282 5.282 14 C 0.252 3.748 15 N -0.316 5.316 16 C 0.120 3.880 17 Cl 0.069 6.931 18 N -0.293 5.293 19 C 0.059 3.941 20 N -0.174 5.174 21 H 0.291 0.709 22 C 0.018 3.982 23 C -0.127 4.127 24 N -0.214 5.214 25 C -0.256 4.256 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.250 0.750 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.982 6.468 9.633 20.567 hybrid contribution 0.163 1.008 2.256 2.476 sum -16.819 7.475 11.889 21.911 Atomic orbital electron populations 1.21738 0.95108 1.00181 1.01443 1.22250 0.95753 0.97942 1.01381 1.18977 0.93440 0.89939 0.82399 0.93975 1.22262 0.91520 1.48488 1.03264 0.95051 1.26925 0.97642 0.91766 1.04020 1.70983 1.08042 1.43399 1.33827 0.83763 0.75296 0.79169 0.72590 1.21106 1.15987 1.19334 1.45118 1.10835 1.54410 1.17799 1.17786 0.86338 0.85219 0.85433 1.67646 1.04096 1.29087 1.30806 1.22230 0.87323 0.90291 0.88166 1.98402 1.59577 1.96472 1.38695 1.66525 1.36891 1.26954 0.98941 1.18449 0.91119 0.96281 0.88238 1.42556 1.18131 1.48536 1.08218 0.70929 1.24669 0.80226 0.95387 0.97944 1.20656 1.05357 1.04136 0.82508 1.70196 1.31329 1.19124 1.00779 1.19774 0.96785 1.12731 0.96327 0.94745 0.92179 0.92815 0.91604 0.93700 0.93500 0.75034 0.87245 0.88215 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.46 71.98 0.61 -4.17 16 2 C -0.13 -5.82 5.28 30.60 0.16 -5.66 16 3 C 0.26 12.13 1.82 44.25 0.08 12.21 16 4 H 0.04 2.09 6.25 -2.39 -0.01 2.07 16 5 C -0.62 -34.20 9.01 25.60 0.23 -33.97 16 6 H 0.03 1.88 7.96 -2.91 -0.02 1.86 16 7 C 0.00 -0.18 5.32 84.66 0.45 0.27 16 8 N -0.93 -56.67 13.70 21.45 0.29 -56.38 16 9 Si 1.07 49.33 26.27 68.60 1.80 51.14 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.24 -9.64 5.67 99.48 0.56 -9.08 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 N -0.66 -28.35 5.14 -327.06 -1.68 -30.04 16 14 C 0.51 20.24 6.11 133.46 0.82 21.06 16 15 N -0.58 -22.68 6.58 -187.70 -1.23 -23.91 16 16 C 0.42 14.50 8.16 180.78 1.48 15.97 16 17 Cl 0.04 1.16 29.25 -2.72 -0.08 1.08 16 18 N -0.56 -18.40 10.43 -188.59 -1.97 -20.37 16 19 C 0.30 9.37 8.51 133.86 1.14 10.51 16 20 N -0.56 -11.40 6.20 -183.88 -1.14 -12.54 16 21 H 0.45 5.26 8.96 -92.71 -0.83 4.42 16 22 C 0.29 6.00 8.09 137.82 1.12 7.11 16 23 C -0.07 -0.59 10.51 71.24 0.75 0.15 16 24 N -0.49 -15.51 11.28 -179.32 -2.02 -17.53 16 25 C -0.13 -4.62 7.16 39.69 0.28 -4.33 16 26 H 0.03 1.32 5.58 -2.39 -0.01 1.30 16 27 H 0.06 2.24 7.73 -2.39 -0.02 2.22 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 2.92 4.73 -2.39 -0.01 2.91 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.26 15.79 8.73 -92.71 -0.81 14.98 16 32 H 0.41 17.73 8.55 -92.70 -0.79 16.94 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -70.40 306.36 0.45 -69.95 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.63 Total: 19.44 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.11 Total: 19.16 kcal Atomic # 7 Polarization: -153.02 SS G_CDS: -7.75 Total: -160.77 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.80 Total: 51.14 kcal Atomic # 17 Polarization: 1.16 SS G_CDS: -0.08 Total: 1.08 kcal Total: -70.40 0.45 -69.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.735 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds