Wall clock time and date at job start Tue Mar 31 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47044 * 2 1 4 4 N 1.46494 * 109.47426 * 120.00216 * 2 1 3 5 5 C 1.36316 * 126.28000 * 300.02270 * 4 2 1 6 6 N 1.30185 * 109.98777 * 179.97438 * 5 4 2 7 7 C 1.35389 * 109.46376 * 359.97438 * 6 5 4 8 8 C 1.37215 * 126.28607 * 119.71412 * 4 2 1 9 9 N 1.32835 * 134.92466 * 0.75738 * 8 4 2 10 10 C 1.31832 * 120.65009 * 179.62379 * 9 8 4 11 11 Cl 1.73600 * 118.77130 * 179.70217 * 10 9 8 12 12 N 1.32071 * 122.45667 * 359.67205 * 10 9 8 13 13 C 1.33009 * 121.18259 * 0.03216 * 12 10 9 14 14 N 1.38261 * 120.77826 * 180.02562 * 13 12 10 15 15 C 1.46493 * 120.00120 * 179.97438 * 14 13 12 16 16 C 1.36885 * 119.99509 * 359.97189 * 14 13 12 17 17 H 1.07994 * 120.00454 * 24.68926 * 16 14 13 18 18 C 1.38842 * 119.99744 * 204.68454 * 16 14 13 19 19 N 1.31545 * 119.99773 * 12.34590 * 18 16 14 20 20 Si 1.86799 * 120.00168 * 192.33687 * 18 16 14 21 21 H 1.48501 * 109.46864 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46966 * 120.00328 * 20 18 16 23 23 H 1.48496 * 109.47455 * 240.00521 * 20 18 16 24 24 H 1.09005 * 109.47105 * 300.00103 * 1 2 3 25 25 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47017 * 59.99961 * 1 2 3 27 27 H 1.09004 * 109.47409 * 240.00346 * 2 1 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47245 * 299.99900 * 3 2 1 30 30 H 1.08994 * 109.46742 * 60.00506 * 3 2 1 31 31 H 1.07998 * 125.01164 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.47445 * 84.82994 * 15 14 13 33 33 H 1.08995 * 109.47756 * 204.83438 * 15 14 13 34 34 H 1.09000 * 109.47218 * 324.83456 * 15 14 13 35 35 H 0.96998 * 119.99397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7689 -0.3386 2.4892 6 7 2.3573 -1.1714 3.2985 7 6 3.0192 -2.1081 2.5791 8 6 2.8060 -1.8140 1.2205 9 7 3.3619 -2.5900 0.2968 10 6 4.0953 -3.6289 0.6446 11 17 4.7924 -4.6147 -0.6028 12 7 4.3200 -3.9473 1.9065 13 6 3.8095 -3.2255 2.9003 14 7 4.0505 -3.5661 4.2184 15 6 3.4803 -2.7588 5.2996 16 6 4.8220 -4.6578 4.5130 17 1 5.5508 -5.0126 3.7994 18 6 4.6675 -5.3090 5.7295 19 7 3.6306 -5.0396 6.4927 20 14 5.9321 -6.5679 6.2822 21 1 6.9946 -6.6876 5.2516 22 1 6.5360 -6.1318 7.5668 23 1 5.2714 -7.8848 6.4677 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1712 0.5066 2.7970 32 1 2.4635 -3.0933 5.5055 33 1 4.0886 -2.8715 6.1970 34 1 3.4643 -1.7107 5.0008 35 1 3.5225 -5.4949 7.3424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:02 Heat of formation + Delta-G solvation = 93.616803 kcal Electronic energy + Delta-G solvation = -21599.111490 eV Core-core repulsion = 18273.187484 eV Total energy + Delta-G solvation = -3325.924005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.24161 -40.18963 -38.46517 -37.47363 -36.72856 -34.56478 -33.08305 -31.63785 -30.25388 -28.54443 -28.13941 -26.57015 -24.44303 -23.93658 -23.56512 -20.69876 -20.01035 -19.10794 -18.29646 -17.60499 -17.01886 -16.65863 -16.28260 -15.70032 -15.41446 -15.35520 -15.13526 -14.93148 -14.75437 -13.87307 -13.56531 -13.33362 -13.12969 -13.06560 -12.77543 -12.74081 -12.55005 -12.33468 -12.28897 -12.13919 -12.06337 -12.04409 -11.96554 -11.13061 -11.00706 -10.31010 -10.00958 -9.78952 -8.83212 -8.48686 -5.98387 0.03647 0.49640 0.61223 1.41320 1.44902 1.56850 1.62669 1.92947 2.14980 2.64111 2.74329 3.17338 3.42210 3.55834 3.69065 3.95962 4.03673 4.16994 4.21378 4.57412 4.64601 4.73515 4.83781 4.87121 4.89916 5.01493 5.04750 5.20325 5.23622 5.29280 5.35004 5.56397 5.78020 6.05923 6.31627 6.58190 6.92335 7.05814 7.23560 7.60416 8.46650 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.005457 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.349042 B = 5129.934485 C = 6507.743791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 C -0.152 4.152 4 N -0.459 5.459 5 C 0.227 3.773 6 N -0.484 5.484 7 C -0.141 4.141 8 C 0.295 3.705 9 N -0.607 5.607 10 C 0.423 3.577 11 Cl 0.018 6.982 12 N -0.610 5.610 13 C 0.398 3.602 14 N -0.381 5.381 15 C 0.137 3.863 16 C -0.323 4.323 17 H 0.100 0.900 18 C -0.002 4.002 19 N -0.880 5.880 20 Si 1.004 2.996 21 H -0.263 1.263 22 H -0.264 1.264 23 H -0.273 1.273 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.261 0.739 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 11.332 -8.604 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 C -0.210 4.210 4 N -0.153 5.153 5 C -0.057 4.057 6 N -0.203 5.203 7 C -0.271 4.271 8 C 0.056 3.944 9 N -0.345 5.345 10 C 0.123 3.877 11 Cl 0.046 6.954 12 N -0.348 5.348 13 C 0.146 3.854 14 N -0.065 5.065 15 C -0.006 4.006 16 C -0.453 4.453 17 H 0.118 0.882 18 C -0.207 4.207 19 N -0.514 5.514 20 Si 0.826 3.174 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.198 1.198 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.277 0.723 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.810 10.759 -7.992 14.239 hybrid contribution 0.265 -0.669 -0.048 0.722 sum -4.544 10.090 -8.040 13.678 Atomic orbital electron populations 1.22150 0.91304 1.02377 1.05241 1.21735 0.96607 0.94374 0.84681 1.22139 1.00898 0.92682 1.05232 1.45405 1.40138 1.20358 1.09434 1.25908 1.01542 1.01278 0.77010 1.70074 1.12425 1.04585 1.33240 1.19473 1.11517 1.02983 0.93086 1.18523 0.95113 0.90806 0.89915 1.66360 1.21481 1.09860 1.36817 1.22007 0.90933 0.88335 0.86416 1.98332 1.81595 1.66814 1.48653 1.67215 1.33769 1.35339 0.98461 1.17769 0.91729 0.89779 0.86123 1.43041 1.39206 1.23166 1.01050 1.21612 0.97643 0.93095 0.88254 1.20202 1.15468 1.06376 1.03269 0.88207 1.26449 0.98645 0.99769 0.95867 1.70175 1.26676 1.41845 1.12671 0.84706 0.77430 0.76741 0.78534 1.18669 1.18887 1.19835 0.89960 0.94102 0.87810 0.89465 0.93909 0.87858 0.89934 0.72308 0.94094 0.91617 0.90618 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.25 71.98 0.67 -1.63 16 2 C 0.13 2.65 3.59 44.99 0.16 2.82 16 3 C -0.15 -2.20 9.25 71.98 0.67 -1.54 16 4 N -0.46 -14.16 2.65 -503.44 -1.33 -15.49 16 5 C 0.23 6.60 11.51 179.94 2.07 8.67 16 6 N -0.48 -19.48 8.77 -191.27 -1.68 -21.15 16 7 C -0.14 -6.67 6.56 39.75 0.26 -6.40 16 8 C 0.30 12.52 8.02 133.90 1.07 13.59 16 9 N -0.61 -26.89 10.42 -188.54 -1.97 -28.85 16 10 C 0.42 19.63 8.16 180.79 1.48 21.11 16 11 Cl 0.02 0.70 29.25 -2.72 -0.08 0.62 16 12 N -0.61 -31.87 9.35 -187.67 -1.75 -33.62 16 13 C 0.40 21.09 7.38 133.49 0.98 22.08 16 14 N -0.38 -20.63 3.10 -540.06 -1.67 -22.30 16 15 C 0.14 6.74 8.17 127.77 1.04 7.79 16 16 C -0.32 -17.77 9.27 84.05 0.78 -16.99 16 17 H 0.10 5.64 7.43 -2.91 -0.02 5.62 16 18 C 0.00 -0.11 5.04 84.88 0.43 0.32 16 19 N -0.88 -45.94 10.83 21.65 0.23 -45.71 16 20 Si 1.00 40.46 29.57 68.60 2.03 42.48 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H 0.08 0.95 7.95 -2.38 -0.02 0.93 16 25 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 2.13 8.08 -2.38 -0.02 2.11 16 28 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.91 7.95 -2.39 -0.02 0.90 16 31 H 0.26 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.04 2.12 7.87 -2.39 -0.02 2.10 16 33 H 0.07 3.27 6.74 -2.39 -0.02 3.26 16 34 H 0.08 3.50 5.80 -2.39 -0.01 3.48 16 35 H 0.28 13.57 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -69.07 312.20 4.51 -64.56 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.12 Total: 9.66 kcal Atomic # 6 Polarization: 40.20 SS G_CDS: 9.61 Total: 49.81 kcal Atomic # 7 Polarization: -158.96 SS G_CDS: -8.17 Total: -167.13 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -69.07 4.51 -64.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.177 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds