Wall clock time and date at job start Tue Mar 31 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 C 1.53000 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.36892 * 119.99738 * 94.56898 * 5 4 3 7 7 H 1.08003 * 119.99807 * 216.17072 * 6 5 4 8 8 C 1.38838 * 119.99952 * 36.18098 * 6 5 4 9 9 N 1.31527 * 120.00121 * 19.79102 * 8 6 5 10 10 Si 1.86799 * 119.99661 * 200.06746 * 8 6 5 11 11 H 1.48505 * 109.47304 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47282 * 119.99904 * 10 8 6 13 13 H 1.48503 * 109.47148 * 239.99729 * 10 8 6 14 14 C 1.38260 * 119.99928 * 274.56538 * 5 4 3 15 15 N 1.33002 * 120.77600 * 359.72696 * 14 5 4 16 16 C 1.32076 * 121.17979 * 179.79978 * 15 14 5 17 17 Cl 1.73602 * 118.76941 * 180.24765 * 16 15 14 18 18 N 1.31824 * 122.45525 * 0.46451 * 16 15 14 19 19 C 1.32827 * 120.65005 * 359.78295 * 18 16 15 20 20 N 1.37223 * 134.92695 * 179.97438 * 19 18 16 21 21 H 0.97004 * 126.28088 * 359.97118 * 20 19 18 22 22 C 1.36304 * 107.43542 * 180.02562 * 20 19 18 23 23 N 1.30187 * 109.99268 * 0.02562 * 22 20 19 24 24 C 1.35393 * 109.45440 * 0.02562 * 23 22 20 25 25 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47000 * 299.99349 * 1 2 3 27 27 H 1.08996 * 109.47304 * 59.99806 * 1 2 3 28 28 H 1.09003 * 109.47415 * 240.00534 * 2 1 3 29 29 H 1.08999 * 109.47761 * 120.00388 * 2 1 3 30 30 H 1.09004 * 109.47274 * 59.99836 * 3 2 1 31 31 H 1.09009 * 109.47194 * 300.00588 * 3 2 1 32 32 H 1.08997 * 109.47206 * 60.00422 * 4 3 2 33 33 H 1.08997 * 109.47113 * 299.99546 * 4 3 2 34 34 H 0.97003 * 120.00408 * 179.97438 * 9 8 6 35 35 H 1.07999 * 125.00615 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3759 3.4369 1.1820 7 1 4.1718 4.4889 1.3165 8 6 4.9605 2.7064 2.2077 9 7 5.5606 1.5662 1.9438 10 14 4.8882 3.3393 3.9637 11 1 4.1575 4.6318 3.9945 12 1 4.1822 2.3506 4.8176 13 1 6.2680 3.5391 4.4752 14 6 4.1983 3.5081 -1.1933 15 7 3.8994 2.9255 -2.3509 16 6 4.0264 3.5729 -3.4951 17 17 3.6123 2.7542 -4.9689 18 7 4.4599 4.8162 -3.5601 19 6 4.7871 5.4778 -2.4558 20 7 5.2558 6.7387 -2.1845 21 1 5.4465 7.4325 -2.8351 22 6 5.4054 6.8368 -0.8333 23 7 5.0590 5.7180 -0.2647 24 6 4.6668 4.8334 -1.2117 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9330 0.9289 -0.8909 33 1 3.9337 0.9287 0.8891 34 1 5.9695 1.0559 2.6604 35 1 5.7599 7.7132 -0.3112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:46 Heat of formation + Delta-G solvation = 92.472875 kcal Electronic energy + Delta-G solvation = -21697.014929 eV Core-core repulsion = 18371.041320 eV Total energy + Delta-G solvation = -3325.973610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51941 -38.42156 -37.02290 -35.92036 -34.30889 -32.95030 -31.75577 -30.97479 -29.13092 -27.88611 -25.25466 -23.64484 -22.81296 -21.57073 -20.73332 -20.35673 -18.86428 -17.30532 -16.74951 -16.17581 -15.28785 -15.00070 -14.81961 -14.65456 -13.89011 -13.69514 -13.57554 -13.33983 -13.08990 -12.44147 -12.24120 -11.88329 -11.65960 -11.31964 -11.00112 -10.83166 -10.75690 -10.67713 -10.55869 -10.46451 -10.45214 -10.19702 -9.84212 -9.41396 -9.27873 -8.81586 -8.27839 -8.07958 -7.00560 -6.58065 -4.13477 1.70780 2.11107 2.35202 3.06727 3.11546 3.18423 3.39301 3.53211 3.85999 4.42053 4.56514 4.90340 5.06506 5.33361 5.43510 5.46906 5.53480 5.59795 5.81149 5.98762 6.19115 6.20528 6.29745 6.37322 6.48362 6.57252 6.58815 6.73953 6.92605 7.13634 7.22276 7.36245 7.60836 7.92112 7.97040 8.38229 8.61444 8.94042 8.97649 9.43550 10.31532 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.007675 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.229085 B = 3647.423386 C = 5646.225943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.127 4.127 4 C 0.106 3.894 5 N -0.351 5.351 6 C -0.294 4.294 7 H 0.125 0.875 8 C 0.041 3.959 9 N -0.844 5.844 10 Si 0.932 3.068 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.423 3.577 15 N -0.600 5.600 16 C 0.439 3.561 17 Cl -0.012 7.012 18 N -0.611 5.611 19 C 0.305 3.695 20 N -0.583 5.583 21 H 0.417 0.583 22 C 0.177 3.823 23 N -0.420 5.420 24 C -0.092 4.092 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.276 0.724 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 3.112 -3.056 5.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.165 4.165 4 C -0.017 4.017 5 N -0.033 5.033 6 C -0.425 4.425 7 H 0.142 0.858 8 C -0.168 4.168 9 N -0.478 5.478 10 Si 0.757 3.243 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.172 3.828 15 N -0.338 5.338 16 C 0.139 3.861 17 Cl 0.016 6.984 18 N -0.349 5.349 19 C 0.066 3.934 20 N -0.199 5.199 21 H 0.255 0.745 22 C -0.108 4.108 23 N -0.138 5.138 24 C -0.223 4.223 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.607 2.046 -2.551 4.869 hybrid contribution 0.445 1.179 0.067 1.262 sum -3.162 3.225 -2.484 5.154 Atomic orbital electron populations 1.21748 0.96486 1.00782 1.01535 1.21401 0.95110 0.97273 1.01780 1.21891 0.96819 0.96070 1.01742 1.21823 0.91957 0.83157 1.04729 1.42908 1.47614 1.11191 1.01574 1.20348 1.37436 0.97747 0.86931 0.85774 1.25616 0.93741 0.96024 1.01432 1.69980 1.29334 1.14414 1.34027 0.85768 0.78563 0.79501 0.80483 1.18447 1.20276 1.20286 1.17833 0.92280 0.86987 0.85704 1.67231 1.32892 1.37771 0.95872 1.21546 0.92596 0.85290 0.86708 1.98341 1.91396 1.77332 1.31345 1.66261 1.29419 1.09318 1.29926 1.18293 0.97472 0.86893 0.90751 1.42559 1.56499 1.11395 1.09433 0.74469 1.25090 1.07129 0.99804 0.78775 1.70272 1.13137 0.99053 1.31357 1.19242 1.15745 0.96704 0.90589 0.93321 0.93079 0.92979 0.92070 0.92249 0.92302 0.92345 0.91394 0.87053 0.91366 0.77418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.13 -2.42 5.52 -26.73 -0.15 -2.57 16 4 C 0.11 2.37 4.93 -4.04 -0.02 2.35 16 5 N -0.35 -8.66 2.62 -114.66 -0.30 -8.96 16 6 C -0.29 -7.40 8.39 -15.07 -0.13 -7.53 16 7 H 0.13 3.20 6.13 -52.48 -0.32 2.88 16 8 C 0.04 0.99 4.97 -17.46 -0.09 0.90 16 9 N -0.84 -21.15 11.33 55.49 0.63 -20.53 16 10 Si 0.93 18.98 29.60 -169.99 -5.03 13.95 16 11 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.42 10.48 7.37 -154.67 -1.14 9.34 16 15 N -0.60 -14.07 9.29 -10.67 -0.10 -14.17 16 16 C 0.44 9.60 8.16 -91.89 -0.75 8.85 16 17 Cl -0.01 -0.21 29.25 -51.86 -1.52 -1.72 16 18 N -0.61 -13.31 10.42 -10.95 -0.11 -13.42 16 19 C 0.30 6.50 8.51 -155.79 -1.33 5.17 16 20 N -0.58 -9.46 6.20 -13.23 -0.08 -9.55 16 21 H 0.42 5.02 8.96 -40.82 -0.37 4.65 16 22 C 0.18 2.90 12.98 -89.47 -1.16 1.74 16 23 N -0.42 -9.16 8.96 -11.81 -0.11 -9.27 16 24 C -0.09 -2.18 6.60 -84.51 -0.56 -2.73 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.07 1.55 7.55 -51.93 -0.39 1.16 16 33 H 0.11 2.63 5.40 -51.93 -0.28 2.35 16 34 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 35 H 0.21 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -29.31 313.70 -10.88 -40.19 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.88 Total: 6.87 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: -5.11 Total: 11.89 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -0.07 Total: -75.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.31 -10.88 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.666 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds