Wall clock time and date at job start Tue Mar 31 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 C 1.53000 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.36892 * 119.99738 * 94.56898 * 5 4 3 7 7 H 1.08003 * 119.99807 * 216.17072 * 6 5 4 8 8 C 1.38838 * 119.99952 * 36.18098 * 6 5 4 9 9 N 1.31527 * 120.00121 * 19.79102 * 8 6 5 10 10 Si 1.86799 * 119.99661 * 200.06746 * 8 6 5 11 11 H 1.48505 * 109.47304 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47282 * 119.99904 * 10 8 6 13 13 H 1.48503 * 109.47148 * 239.99729 * 10 8 6 14 14 C 1.38260 * 119.99928 * 274.56538 * 5 4 3 15 15 N 1.33002 * 120.77600 * 359.72696 * 14 5 4 16 16 C 1.32076 * 121.17979 * 179.79978 * 15 14 5 17 17 Cl 1.73602 * 118.76941 * 180.24765 * 16 15 14 18 18 N 1.31824 * 122.45525 * 0.46451 * 16 15 14 19 19 C 1.32827 * 120.65005 * 359.78295 * 18 16 15 20 20 N 1.37223 * 134.92695 * 179.97438 * 19 18 16 21 21 H 0.97004 * 126.28088 * 359.97118 * 20 19 18 22 22 C 1.36304 * 107.43542 * 180.02562 * 20 19 18 23 23 N 1.30187 * 109.99268 * 0.02562 * 22 20 19 24 24 C 1.35393 * 109.45440 * 0.02562 * 23 22 20 25 25 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47000 * 299.99349 * 1 2 3 27 27 H 1.08996 * 109.47304 * 59.99806 * 1 2 3 28 28 H 1.09003 * 109.47415 * 240.00534 * 2 1 3 29 29 H 1.08999 * 109.47761 * 120.00388 * 2 1 3 30 30 H 1.09004 * 109.47274 * 59.99836 * 3 2 1 31 31 H 1.09009 * 109.47194 * 300.00588 * 3 2 1 32 32 H 1.08997 * 109.47206 * 60.00422 * 4 3 2 33 33 H 1.08997 * 109.47113 * 299.99546 * 4 3 2 34 34 H 0.97003 * 120.00408 * 179.97438 * 9 8 6 35 35 H 1.07999 * 125.00615 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3759 3.4369 1.1820 7 1 4.1718 4.4889 1.3165 8 6 4.9605 2.7064 2.2077 9 7 5.5606 1.5662 1.9438 10 14 4.8882 3.3393 3.9637 11 1 4.1575 4.6318 3.9945 12 1 4.1822 2.3506 4.8176 13 1 6.2680 3.5391 4.4752 14 6 4.1983 3.5081 -1.1933 15 7 3.8994 2.9255 -2.3509 16 6 4.0264 3.5729 -3.4951 17 17 3.6123 2.7542 -4.9689 18 7 4.4599 4.8162 -3.5601 19 6 4.7871 5.4778 -2.4558 20 7 5.2558 6.7387 -2.1845 21 1 5.4465 7.4325 -2.8351 22 6 5.4054 6.8368 -0.8333 23 7 5.0590 5.7180 -0.2647 24 6 4.6668 4.8334 -1.2117 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9330 0.9289 -0.8909 33 1 3.9337 0.9287 0.8891 34 1 5.9695 1.0559 2.6604 35 1 5.7599 7.7132 -0.3112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:46 Heat of formation + Delta-G solvation = 77.536354 kcal Electronic energy + Delta-G solvation = -21697.662626 eV Core-core repulsion = 18371.041320 eV Total energy + Delta-G solvation = -3326.621306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.10210 -40.08448 -38.69775 -37.49711 -35.73982 -34.67460 -33.34871 -32.66196 -30.67785 -29.47914 -26.98410 -25.17929 -24.46718 -23.13643 -22.22544 -21.86962 -20.50811 -18.94143 -18.44502 -17.84640 -16.96956 -16.65620 -16.34378 -16.21345 -15.48766 -15.19999 -14.98228 -14.94764 -14.62737 -13.90404 -13.71258 -13.51190 -13.16955 -12.95204 -12.63842 -12.35293 -12.29728 -12.15541 -12.06067 -12.00912 -11.94101 -11.72721 -11.41580 -11.06572 -10.98528 -10.42452 -9.98365 -9.78912 -8.74829 -8.33121 -5.99089 0.07089 0.49674 0.61357 1.45148 1.46486 1.59983 1.95840 2.05076 2.20104 2.71842 2.79579 3.16647 3.61777 3.79960 3.85907 4.09921 4.17816 4.31027 4.40908 4.50915 4.72110 4.85622 4.86383 4.99600 5.01132 5.06804 5.18438 5.35861 5.41663 5.43280 5.55467 5.63057 5.96182 6.16268 6.49745 6.65906 7.06305 7.19461 7.24737 7.66860 8.55674 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.007675 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.229085 B = 3647.423386 C = 5646.225943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.112 4.112 4 C 0.115 3.885 5 N -0.373 5.373 6 C -0.312 4.312 7 H 0.114 0.886 8 C 0.004 3.996 9 N -0.880 5.880 10 Si 0.994 3.006 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.277 1.277 14 C 0.407 3.593 15 N -0.613 5.613 16 C 0.419 3.581 17 Cl 0.021 6.979 18 N -0.604 5.604 19 C 0.287 3.713 20 N -0.562 5.562 21 H 0.441 0.559 22 C 0.225 3.775 23 N -0.475 5.475 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.278 0.722 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 4.828 -3.185 6.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.151 4.151 4 C -0.008 4.008 5 N -0.058 5.058 6 C -0.442 4.442 7 H 0.131 0.869 8 C -0.201 4.201 9 N -0.514 5.514 10 Si 0.816 3.184 11 H -0.182 1.182 12 H -0.195 1.195 13 H -0.203 1.203 14 C 0.156 3.844 15 N -0.351 5.351 16 C 0.120 3.880 17 Cl 0.048 6.952 18 N -0.342 5.342 19 C 0.047 3.953 20 N -0.179 5.179 21 H 0.283 0.717 22 C -0.062 4.062 23 N -0.193 5.193 24 C -0.252 4.252 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.786 3.794 -2.744 6.022 hybrid contribution 0.571 0.850 -0.117 1.031 sum -3.215 4.644 -2.861 6.331 Atomic orbital electron populations 1.21705 0.94306 1.02333 1.01657 1.21381 0.96952 0.94766 1.02003 1.21759 0.94697 0.98169 1.00469 1.21719 0.93691 0.82426 1.02973 1.43040 1.49365 1.11784 1.01562 1.20336 1.38552 0.97589 0.87711 0.86902 1.26370 0.93069 0.96175 1.04509 1.70061 1.30701 1.15663 1.35002 0.84866 0.78343 0.79042 0.76159 1.18248 1.19459 1.20259 1.18320 0.91977 0.87886 0.86196 1.67273 1.33369 1.38300 0.96183 1.22036 0.92630 0.85771 0.87566 1.98340 1.91095 1.76749 1.28976 1.66397 1.28622 1.09206 1.29967 1.18583 0.98173 0.88601 0.89972 1.42581 1.55029 1.10133 1.10159 0.71663 1.26362 1.01735 0.99579 0.78522 1.70251 1.16142 1.00685 1.32226 1.19512 1.16482 0.96999 0.92198 0.91035 0.92846 0.92991 0.91858 0.92017 0.93205 0.93703 0.92998 0.88568 0.91190 0.71370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.95 16 2 C -0.11 -3.56 5.93 30.59 0.18 -3.38 16 3 C -0.11 -4.45 5.52 30.59 0.17 -4.28 16 4 C 0.11 5.38 4.93 86.38 0.43 5.81 16 5 N -0.37 -19.21 2.62 -516.69 -1.36 -20.56 16 6 C -0.31 -16.24 8.39 84.05 0.71 -15.53 16 7 H 0.11 5.99 6.13 -2.91 -0.02 5.98 16 8 C 0.00 0.18 4.97 84.88 0.42 0.60 16 9 N -0.88 -45.62 11.33 21.65 0.25 -45.37 16 10 Si 0.99 39.43 29.60 68.60 2.03 41.46 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 12 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 13 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 14 C 0.41 20.78 7.37 133.49 0.98 21.77 16 15 N -0.61 -29.48 9.29 -187.68 -1.74 -31.22 16 16 C 0.42 18.38 8.16 180.79 1.48 19.85 16 17 Cl 0.02 0.73 29.25 -2.72 -0.08 0.65 16 18 N -0.60 -25.85 10.42 -188.55 -1.97 -27.81 16 19 C 0.29 11.89 8.51 133.90 1.14 13.03 16 20 N -0.56 -16.42 6.20 -195.76 -1.21 -17.64 16 21 H 0.44 8.78 8.96 -92.71 -0.83 7.95 16 22 C 0.22 6.52 12.98 179.95 2.34 8.86 16 23 N -0.47 -20.19 8.96 -191.29 -1.71 -21.90 16 24 C -0.12 -5.83 6.60 39.75 0.26 -5.57 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.05 2.51 7.55 -2.39 -0.02 2.49 16 33 H 0.10 4.79 5.40 -2.39 -0.01 4.77 16 34 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.27 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -66.76 313.70 3.33 -63.43 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.31 Total: 20.76 kcal Atomic # 6 Polarization: 29.39 SS G_CDS: 8.82 Total: 38.21 kcal Atomic # 7 Polarization: -156.76 SS G_CDS: -7.75 Total: -164.51 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -66.76 3.33 -63.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.966 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds