Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 C 1.52994 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47328 * 179.97438 * 4 3 2 6 6 C 1.36855 * 120.00284 * 269.99937 * 5 4 3 7 7 H 1.08000 * 119.99934 * 6.17037 * 6 5 4 8 8 C 1.38797 * 120.00432 * 186.16504 * 6 5 4 9 9 N 1.31585 * 119.99702 * 6.66239 * 8 6 5 10 10 Si 1.86801 * 120.00527 * 186.65861 * 8 6 5 11 11 H 1.48502 * 109.46705 * 89.99985 * 10 8 6 12 12 H 1.48493 * 109.47597 * 210.00151 * 10 8 6 13 13 H 1.48503 * 109.46977 * 330.00373 * 10 8 6 14 14 C 1.38851 * 120.00099 * 89.99725 * 5 4 3 15 15 N 1.32553 * 120.41968 * 263.53387 * 14 5 4 16 16 N 1.28217 * 122.72382 * 180.02562 * 15 14 5 17 17 C 1.31775 * 122.99343 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 120.31582 * 179.97438 * 17 16 15 19 19 C 1.40079 * 119.36208 * 359.97438 * 17 16 15 20 20 N 1.35193 * 135.34079 * 180.34370 * 19 17 16 21 21 C 1.30320 * 109.56718 * 180.10595 * 20 19 17 22 22 N 1.36011 * 110.06046 * 359.56635 * 21 20 19 23 23 H 0.97009 * 126.33093 * 180.24781 * 22 21 20 24 24 C 1.37331 * 107.33921 * 0.26226 * 22 21 20 25 25 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47025 * 299.99977 * 1 2 3 27 27 H 1.08995 * 109.46805 * 60.00359 * 1 2 3 28 28 H 1.08994 * 109.47094 * 239.99440 * 2 1 3 29 29 H 1.09006 * 109.47207 * 119.99406 * 2 1 3 30 30 H 1.08999 * 109.47551 * 59.99268 * 3 2 1 31 31 H 1.09006 * 109.46596 * 299.99781 * 3 2 1 32 32 H 1.09009 * 109.47357 * 59.99775 * 4 3 2 33 33 H 1.08993 * 109.47466 * 299.99616 * 4 3 2 34 34 H 0.97002 * 119.99314 * 174.99989 * 9 8 6 35 35 H 1.07998 * 124.96666 * 179.82989 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2869 3.4682 -1.1854 7 1 4.0141 2.9965 -2.1179 8 6 4.8693 4.7281 -1.1894 9 7 5.3210 5.2476 -0.0681 10 14 5.0119 5.6862 -2.7867 11 1 3.7972 6.5197 -2.9739 12 1 6.2099 6.5621 -2.7334 13 1 5.1418 4.7384 -3.9225 14 6 4.2892 3.4790 1.2022 15 7 3.3671 4.2795 1.7182 16 7 3.5337 4.9063 2.8242 17 6 4.6329 4.8106 3.5447 18 17 4.7847 5.6916 5.0328 19 6 5.6776 3.9911 3.0983 20 7 6.9033 3.6577 3.5612 21 6 7.4762 2.8363 2.7273 22 7 6.6479 2.5829 1.6787 23 1 6.8361 2.0020 0.9250 24 6 5.4959 3.3017 1.8842 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9289 0.8908 34 1 5.7926 6.0952 -0.0817 35 1 8.4626 2.4149 2.8529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = 107.002065 kcal Electronic energy + Delta-G solvation = -21966.109106 eV Core-core repulsion = 18640.765529 eV Total energy + Delta-G solvation = -3325.343577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74890 -38.54427 -36.81672 -35.85737 -34.40492 -32.32420 -31.61006 -30.00250 -29.89269 -27.91641 -24.87533 -23.74385 -22.99569 -21.97347 -20.79159 -20.40755 -18.45133 -18.09710 -16.97139 -15.85108 -15.34601 -15.05635 -14.76211 -14.24401 -14.17943 -13.78931 -13.62933 -13.32116 -13.02677 -12.52707 -12.21259 -11.55929 -11.32334 -11.21274 -11.01670 -10.96375 -10.79443 -10.70900 -10.65089 -10.35930 -10.18510 -10.08528 -10.01128 -9.69866 -9.38851 -8.79393 -8.35655 -7.89363 -7.43490 -6.10046 -3.67435 1.55718 2.10659 2.55289 3.20000 3.26071 3.28079 3.30860 3.46155 4.10052 4.54561 4.63259 4.70941 5.10700 5.23275 5.25608 5.28014 5.44995 5.52366 5.63392 5.68972 5.99969 6.03489 6.09915 6.12660 6.20998 6.24513 6.40134 6.45537 6.70639 6.81339 6.93539 6.95642 7.36462 7.71555 7.83182 8.19025 8.80571 9.32786 9.70736 9.97706 10.88277 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.007313 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.046959 B = 3828.125441 C = 4973.212497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.154 3.846 5 N -0.549 5.549 6 C -0.264 4.264 7 H 0.092 0.908 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.929 3.071 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.485 3.515 15 N -0.266 5.266 16 N -0.236 5.236 17 C 0.145 3.855 18 Cl -0.041 7.041 19 C 0.033 3.967 20 N -0.478 5.478 21 C 0.237 3.763 22 N -0.560 5.560 23 H 0.426 0.574 24 C 0.077 3.923 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.268 0.732 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -9.569 2.177 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.029 3.971 5 N -0.269 5.269 6 C -0.391 4.391 7 H 0.110 0.890 8 C -0.194 4.194 9 N -0.547 5.547 10 Si 0.758 3.242 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.240 3.760 15 N -0.108 5.108 16 N -0.074 5.074 17 C -0.038 4.038 18 Cl -0.013 7.013 19 C -0.097 4.097 20 N -0.199 5.199 21 C -0.052 4.052 22 N -0.169 5.169 23 H 0.265 0.735 24 C -0.050 4.050 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.355 -8.260 2.867 8.751 hybrid contribution 1.509 -0.179 -1.717 2.293 sum 1.865 -8.440 1.150 8.720 Atomic orbital electron populations 1.21753 0.96322 1.00747 1.01902 1.21485 0.95589 0.97705 1.01182 1.22203 0.97650 0.95187 1.03002 1.20964 0.92750 0.83573 0.99824 1.41468 1.75236 1.09832 1.00342 1.19445 1.36230 0.99404 0.84049 0.89049 1.24943 0.98975 0.97433 0.98099 1.69065 1.40503 1.20336 1.24774 0.85856 0.77580 0.79620 0.81106 1.20845 1.21553 1.20325 1.18295 0.85232 0.86691 0.85753 1.73076 1.26841 1.07359 1.03510 1.72258 1.17957 1.16038 1.01151 1.22402 0.92022 0.97392 0.92033 1.98317 1.97400 1.74920 1.30702 1.19161 0.94359 1.01713 0.94508 1.70226 1.05891 1.14815 1.28989 1.25279 0.97638 0.97667 0.84583 1.42868 1.13107 1.38953 1.21959 0.73476 1.20246 0.90519 0.96989 0.97204 0.93428 0.92850 0.92821 0.92418 0.92693 0.91981 0.91486 0.91781 0.94223 0.91914 0.76997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.14 -2.34 5.54 -26.73 -0.15 -2.49 16 4 C 0.15 2.72 5.65 -4.05 -0.02 2.69 16 5 N -0.55 -12.20 2.64 -114.89 -0.30 -12.51 16 6 C -0.26 -6.38 9.78 -15.10 -0.15 -6.52 16 7 H 0.09 2.10 7.84 -52.49 -0.41 1.69 16 8 C 0.00 0.10 5.40 -17.45 -0.09 0.01 16 9 N -0.90 -24.44 9.83 55.49 0.55 -23.90 16 10 Si 0.93 20.81 29.56 -169.99 -5.03 15.78 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 C 0.48 11.50 3.71 -154.81 -0.58 10.92 16 15 N -0.27 -6.83 11.25 31.26 0.35 -6.48 16 16 N -0.24 -5.87 11.43 33.10 0.38 -5.49 16 17 C 0.15 3.35 7.43 -16.89 -0.13 3.22 16 18 Cl -0.04 -0.80 29.16 -51.86 -1.51 -2.32 16 19 C 0.03 0.73 7.15 -84.73 -0.61 0.13 16 20 N -0.48 -9.30 11.26 -11.98 -0.13 -9.44 16 21 C 0.24 3.60 12.97 -89.63 -1.16 2.44 16 22 N -0.56 -9.47 6.20 -11.60 -0.07 -9.55 16 23 H 0.43 6.08 8.96 -40.82 -0.37 5.71 16 24 C 0.08 1.67 6.30 -83.87 -0.53 1.14 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.03 8.04 -51.92 -0.42 0.61 16 33 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.27 7.42 8.32 -40.82 -0.34 7.08 16 35 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -30.90 318.67 -8.30 -39.20 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.13 Total: 1.50 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -3.20 Total: 8.39 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: 0.77 Total: -67.36 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.51 Total: -2.32 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.90 -8.30 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.201 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds