Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 C 1.52994 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47328 * 179.97438 * 4 3 2 6 6 C 1.36855 * 120.00284 * 269.99937 * 5 4 3 7 7 H 1.08000 * 119.99934 * 6.17037 * 6 5 4 8 8 C 1.38797 * 120.00432 * 186.16504 * 6 5 4 9 9 N 1.31585 * 119.99702 * 6.66239 * 8 6 5 10 10 Si 1.86801 * 120.00527 * 186.65861 * 8 6 5 11 11 H 1.48502 * 109.46705 * 89.99985 * 10 8 6 12 12 H 1.48493 * 109.47597 * 210.00151 * 10 8 6 13 13 H 1.48503 * 109.46977 * 330.00373 * 10 8 6 14 14 C 1.38851 * 120.00099 * 89.99725 * 5 4 3 15 15 N 1.32553 * 120.41968 * 263.53387 * 14 5 4 16 16 N 1.28217 * 122.72382 * 180.02562 * 15 14 5 17 17 C 1.31775 * 122.99343 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 120.31582 * 179.97438 * 17 16 15 19 19 C 1.40079 * 119.36208 * 359.97438 * 17 16 15 20 20 N 1.35193 * 135.34079 * 180.34370 * 19 17 16 21 21 C 1.30320 * 109.56718 * 180.10595 * 20 19 17 22 22 N 1.36011 * 110.06046 * 359.56635 * 21 20 19 23 23 H 0.97009 * 126.33093 * 180.24781 * 22 21 20 24 24 C 1.37331 * 107.33921 * 0.26226 * 22 21 20 25 25 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47025 * 299.99977 * 1 2 3 27 27 H 1.08995 * 109.46805 * 60.00359 * 1 2 3 28 28 H 1.08994 * 109.47094 * 239.99440 * 2 1 3 29 29 H 1.09006 * 109.47207 * 119.99406 * 2 1 3 30 30 H 1.08999 * 109.47551 * 59.99268 * 3 2 1 31 31 H 1.09006 * 109.46596 * 299.99781 * 3 2 1 32 32 H 1.09009 * 109.47357 * 59.99775 * 4 3 2 33 33 H 1.08993 * 109.47466 * 299.99616 * 4 3 2 34 34 H 0.97002 * 119.99314 * 174.99989 * 9 8 6 35 35 H 1.07998 * 124.96666 * 179.82989 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2869 3.4682 -1.1854 7 1 4.0141 2.9965 -2.1179 8 6 4.8693 4.7281 -1.1894 9 7 5.3210 5.2476 -0.0681 10 14 5.0119 5.6862 -2.7867 11 1 3.7972 6.5197 -2.9739 12 1 6.2099 6.5621 -2.7334 13 1 5.1418 4.7384 -3.9225 14 6 4.2892 3.4790 1.2022 15 7 3.3671 4.2795 1.7182 16 7 3.5337 4.9063 2.8242 17 6 4.6329 4.8106 3.5447 18 17 4.7847 5.6916 5.0328 19 6 5.6776 3.9911 3.0983 20 7 6.9033 3.6577 3.5612 21 6 7.4762 2.8363 2.7273 22 7 6.6479 2.5829 1.6787 23 1 6.8361 2.0020 0.9250 24 6 5.4959 3.3017 1.8842 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9289 0.8908 34 1 5.7926 6.0952 -0.0817 35 1 8.4626 2.4149 2.8529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = 88.089417 kcal Electronic energy + Delta-G solvation = -21966.929220 eV Core-core repulsion = 18640.765529 eV Total energy + Delta-G solvation = -3326.163691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.26568 -40.19112 -38.41786 -37.47574 -35.74496 -33.88734 -33.27721 -31.54629 -31.52795 -29.37399 -26.61245 -25.22100 -24.60745 -23.35852 -22.18064 -21.79236 -19.98177 -19.82458 -18.58355 -17.48926 -17.03406 -16.41158 -16.33319 -15.83879 -15.59124 -15.44315 -14.78722 -14.76550 -14.65869 -13.84453 -13.47767 -13.17068 -12.99367 -12.87429 -12.63837 -12.49736 -12.29314 -12.20309 -12.04823 -11.89119 -11.76215 -11.52769 -11.38707 -11.24809 -11.05938 -10.58472 -9.95297 -9.56513 -9.19890 -7.98341 -5.55890 -0.01950 0.42177 0.87709 1.40853 1.46565 1.52200 1.86674 2.08798 2.33639 2.88229 2.98945 3.24221 3.25670 3.70725 4.01176 4.08997 4.13994 4.24625 4.37257 4.45887 4.60746 4.73286 4.79024 4.91198 5.00267 5.04293 5.15289 5.24335 5.33531 5.38024 5.45364 5.48703 5.59212 5.98252 6.43869 6.76190 6.94006 7.56870 7.88723 8.23336 8.95606 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.007313 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.046959 B = 3828.125441 C = 4973.212497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.150 3.850 5 N -0.558 5.558 6 C -0.255 4.255 7 H 0.103 0.897 8 C -0.047 4.047 9 N -0.926 5.926 10 Si 0.981 3.019 11 H -0.299 1.299 12 H -0.300 1.300 13 H -0.256 1.256 14 C 0.478 3.522 15 N -0.307 5.307 16 N -0.265 5.265 17 C 0.133 3.867 18 Cl -0.020 7.020 19 C 0.019 3.981 20 N -0.508 5.508 21 C 0.273 3.727 22 N -0.550 5.550 23 H 0.440 0.560 24 C 0.061 3.939 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.251 0.749 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 -11.954 1.612 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.172 4.172 4 C 0.027 3.973 5 N -0.279 5.279 6 C -0.383 4.383 7 H 0.121 0.879 8 C -0.242 4.242 9 N -0.572 5.572 10 Si 0.810 3.190 11 H -0.227 1.227 12 H -0.227 1.227 13 H -0.180 1.180 14 C 0.234 3.766 15 N -0.149 5.149 16 N -0.102 5.102 17 C -0.051 4.051 18 Cl 0.008 6.992 19 C -0.111 4.111 20 N -0.229 5.229 21 C -0.014 4.014 22 N -0.160 5.160 23 H 0.282 0.718 24 C -0.067 4.067 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 1.885 -10.706 2.283 11.108 hybrid contribution 1.093 0.477 -1.464 1.888 sum 2.978 -10.229 0.819 10.685 Atomic orbital electron populations 1.21752 0.95620 1.02039 1.01306 1.21432 0.96185 0.95015 1.02504 1.22072 0.97109 0.97361 1.00610 1.21213 0.93095 0.81678 1.01353 1.41728 1.75511 1.11121 0.99501 1.19772 1.34180 0.99123 0.85181 0.87910 1.25579 0.99988 0.98548 1.00083 1.69316 1.41909 1.19812 1.26130 0.85028 0.75997 0.78450 0.79505 1.22720 1.22723 1.17987 1.18427 0.85683 0.86364 0.86148 1.72921 1.28762 1.08797 1.04463 1.72130 1.19330 1.17110 1.01676 1.22650 0.92123 0.97678 0.92663 1.98305 1.97314 1.74461 1.29133 1.19319 0.95261 1.01653 0.94894 1.70257 1.05099 1.16963 1.30617 1.26595 0.98442 0.94352 0.82020 1.42927 1.11806 1.38402 1.22856 0.71841 1.20106 0.91345 0.98051 0.97178 0.91146 0.93871 0.93101 0.90590 0.91744 0.95008 0.93241 0.89631 0.93013 0.93802 0.70584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.91 71.98 0.71 -2.63 16 2 C -0.11 -2.71 5.93 30.60 0.18 -2.53 16 3 C -0.13 -4.34 5.54 30.59 0.17 -4.17 16 4 C 0.15 5.09 5.65 86.38 0.49 5.58 16 5 N -0.56 -24.60 2.64 -517.41 -1.36 -25.97 16 6 C -0.25 -12.13 9.78 84.04 0.82 -11.31 16 7 H 0.10 4.56 7.84 -2.91 -0.02 4.54 16 8 C -0.05 -2.40 5.40 84.86 0.46 -1.94 16 9 N -0.93 -50.95 9.83 21.65 0.21 -50.74 16 10 Si 0.98 42.97 29.56 68.60 2.03 45.00 16 11 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 14 C 0.48 22.90 3.71 133.22 0.49 23.39 16 15 N -0.31 -16.35 11.25 -55.02 -0.62 -16.97 16 16 N -0.26 -13.66 11.43 -49.18 -0.56 -14.22 16 17 C 0.13 6.24 7.43 85.15 0.63 6.87 16 18 Cl -0.02 -0.78 29.16 -2.72 -0.08 -0.86 16 19 C 0.02 0.84 7.15 39.70 0.28 1.13 16 20 N -0.51 -18.71 11.26 -191.83 -2.16 -20.87 16 21 C 0.27 7.26 12.97 180.00 2.34 9.60 16 22 N -0.55 -17.18 6.20 -190.61 -1.18 -18.36 16 23 H 0.44 11.15 8.96 -92.70 -0.83 10.32 16 24 C 0.06 2.60 6.30 39.27 0.25 2.84 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.09 2.52 8.04 -2.38 -0.02 2.50 16 33 H 0.05 1.62 8.05 -2.39 -0.02 1.60 16 34 H 0.25 14.27 8.32 -92.71 -0.77 13.50 16 35 H 0.28 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -69.88 318.67 3.40 -66.49 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.30 Total: 9.65 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 6.83 Total: 26.84 kcal Atomic # 7 Polarization: -141.45 SS G_CDS: -5.67 Total: -147.12 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -69.88 3.40 -66.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.575 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds