Wall clock time and date at job start Tue Mar 31 2020 06:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 H 1.09005 * 109.46909 * 305.00260 * 3 2 1 5 5 C 1.50694 * 109.47218 * 185.00104 * 3 2 1 6 6 H 1.07999 * 119.99886 * 239.99715 * 5 3 2 7 7 C 1.37881 * 120.00031 * 60.00208 * 5 3 2 8 8 N 1.31511 * 119.99794 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99640 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47540 * 59.99906 * 9 7 5 11 11 H 1.48510 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47023 * 299.99448 * 9 7 5 13 13 N 1.46501 * 109.46887 * 64.99733 * 3 2 1 14 14 C 1.34776 * 120.00196 * 275.00253 * 13 3 2 15 15 O 1.21549 * 119.99999 * 355.32561 * 14 13 3 16 16 C 1.47850 * 120.00024 * 175.32603 * 14 13 3 17 17 C 1.39593 * 120.14027 * 253.74928 * 16 14 13 18 18 C 1.37936 * 119.85073 * 179.78957 * 17 16 14 19 19 C 1.38387 * 120.14229 * 0.48942 * 18 17 16 20 20 C 1.38335 * 120.29152 * 359.73947 * 19 18 17 21 21 C 1.37974 * 120.14782 * 0.02562 * 20 19 18 22 22 S 1.76198 * 120.07346 * 179.97438 * 21 20 19 23 23 C 1.81401 * 103.00053 * 96.23114 * 22 21 20 24 24 O 1.42104 * 102.99904 * 210.07933 * 22 21 20 25 25 H 1.09002 * 109.47615 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47515 * 60.00246 * 1 2 3 27 27 H 1.09003 * 109.47302 * 299.99760 * 1 2 3 28 28 H 1.09002 * 109.47333 * 120.00196 * 2 1 3 29 29 H 1.09006 * 109.47155 * 239.99734 * 2 1 3 30 30 H 0.97008 * 119.99714 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99901 * 95.00462 * 13 3 2 32 32 H 1.08005 * 120.07635 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.93150 * 180.23201 * 18 17 16 34 34 H 1.08006 * 119.85342 * 179.76715 * 19 18 17 35 35 H 1.08000 * 119.92336 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.47006 * 54.74849 * 23 22 21 37 37 H 1.08996 * 109.47044 * 174.74601 * 23 22 21 38 38 H 1.08994 * 109.46922 * 294.75437 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8799 -1.3811 10 1 6.5966 0.1451 -0.2344 11 1 6.3978 0.2155 -2.6499 12 1 6.5004 2.2798 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3086 2.7074 0.4065 16 6 0.0044 3.2339 2.6616 17 6 -0.9442 2.5678 3.4395 18 6 -1.3386 3.1024 4.6483 19 6 -0.8035 4.3014 5.0856 20 6 0.1334 4.9689 4.3172 21 6 0.5401 4.4426 3.1084 22 16 1.7330 5.2948 2.1309 23 6 3.2894 4.4814 2.5857 24 8 1.3783 4.9303 0.8040 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8292 -0.0619 -2.9496 31 1 2.2719 2.1231 1.9978 32 1 -1.3656 1.6341 3.0974 33 1 -2.0696 2.5863 5.2530 34 1 -1.1184 4.7177 6.0312 35 1 0.5474 5.9040 4.6644 36 1 3.1966 3.4066 2.4299 37 1 4.0971 4.8700 1.9656 38 1 3.5094 4.6788 3.6348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187866001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:27 Heat of formation + Delta-G solvation = -40.516537 kcal Electronic energy + Delta-G solvation = -22481.853126 eV Core-core repulsion = 19223.403962 eV Total energy + Delta-G solvation = -3258.449165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70086 -37.96631 -35.35353 -34.92980 -32.41107 -31.48528 -31.13334 -30.38152 -28.54076 -26.92835 -23.93071 -22.89679 -22.72399 -20.40709 -19.37687 -18.18844 -17.39418 -16.21279 -15.85763 -15.58313 -15.25309 -14.87639 -14.47926 -14.24305 -13.93768 -13.87573 -13.40558 -13.03913 -12.74031 -12.64579 -12.50354 -12.07492 -11.82477 -11.52088 -11.49448 -11.28715 -11.21228 -10.95884 -10.77674 -10.28498 -10.15384 -9.95617 -9.62760 -9.21822 -9.06563 -9.00416 -8.78127 -8.43739 -8.24776 -7.72249 -6.06131 -4.14601 0.87003 1.22933 2.00012 2.83048 3.27000 3.31954 3.33053 3.47711 3.63126 4.08493 4.16782 4.40381 4.79660 4.92772 5.09728 5.24988 5.32580 5.38625 5.49729 5.54116 5.71959 5.88527 6.14136 6.25669 6.28747 6.35459 6.39750 6.45421 6.67097 6.81592 7.04570 7.24970 7.40667 7.55450 7.66495 7.77501 7.99965 8.24010 8.72313 8.84457 9.21165 9.51470 10.99621 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.005953 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.702009 B = 4702.698064 C = 5578.958417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.054 0.946 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.704 5.704 14 C 0.549 3.451 15 O -0.521 6.521 16 C -0.046 4.046 17 C -0.103 4.103 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.048 4.048 21 C -0.441 4.441 22 S 1.308 4.692 23 C -0.499 4.499 24 O -0.811 6.811 25 H 0.025 0.975 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.264 0.736 31 H 0.379 0.621 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 10.352 17.465 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.071 0.929 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.332 3.668 15 O -0.398 6.398 16 C -0.051 4.051 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.153 4.153 20 C -0.068 4.068 21 C -0.536 4.536 22 S 1.503 4.497 23 C -0.656 4.656 24 O -0.806 6.806 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.213 0.787 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.278 10.960 15.884 19.767 hybrid contribution 1.126 -2.376 0.055 2.630 sum -3.152 8.585 15.939 18.376 Atomic orbital electron populations 1.21826 0.98619 0.98096 1.00975 1.21964 0.92449 1.00072 1.02250 1.18752 0.94154 0.88646 0.81168 0.92850 1.21136 0.90667 1.38747 1.06169 0.92524 1.24866 0.98452 0.94955 0.95367 1.69886 1.35086 1.37675 1.09327 0.86547 0.85079 0.78252 0.77428 1.20248 1.21061 1.20226 1.46577 1.13920 1.56565 1.18342 1.18009 0.83313 0.78699 0.86741 1.90742 1.54015 1.57189 1.37856 1.20381 0.95896 0.94264 0.94541 1.21255 0.96577 1.00156 0.94290 1.21237 0.98427 0.95622 0.95494 1.21325 0.98031 0.95750 1.00190 1.20753 0.95476 0.98769 0.91755 1.28197 1.14216 1.04205 1.06975 1.69474 0.84246 1.09273 0.86710 1.27894 1.17760 1.11644 1.08302 1.93382 1.78075 1.79497 1.29638 0.95611 0.93035 0.94838 0.95165 0.88108 0.92572 0.78700 0.85498 0.85506 0.85465 0.84447 0.88944 0.87393 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.58 37.16 0.32 -2.98 16 2 C -0.13 -3.33 5.45 -26.73 -0.15 -3.48 16 3 C 0.27 7.51 2.25 -69.09 -0.16 7.35 16 4 H 0.05 1.74 7.51 -51.93 -0.39 1.35 16 5 C -0.53 -14.78 8.73 -34.44 -0.30 -15.08 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -25.86 11.29 55.43 0.63 -25.24 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.70 -16.41 4.51 -55.88 -0.25 -16.66 16 14 C 0.55 12.64 2.78 -12.33 -0.03 12.61 16 15 O -0.52 -14.29 14.45 -4.81 -0.07 -14.36 16 16 C -0.05 -0.83 5.62 -104.97 -0.59 -1.42 16 17 C -0.10 -1.57 9.79 -39.19 -0.38 -1.96 16 18 C -0.09 -1.01 10.03 -39.64 -0.40 -1.41 16 19 C -0.13 -1.27 10.04 -39.49 -0.40 -1.67 16 20 C -0.05 -0.47 9.74 -39.64 -0.39 -0.86 16 21 C -0.44 -6.16 5.61 -39.19 -0.22 -6.38 16 22 S 1.31 17.15 13.91 -107.50 -1.50 15.65 16 23 C -0.50 -6.29 10.70 101.05 1.08 -5.21 16 24 O -0.81 -17.64 14.87 -45.36 -0.67 -18.32 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.32 7.91 -51.93 -0.41 0.91 16 27 H 0.03 0.77 5.74 -51.93 -0.30 0.47 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.85 5.95 -51.93 -0.31 2.54 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 7.88 5.90 -40.82 -0.24 7.64 16 32 H 0.13 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.09 1.48 5.08 -51.93 -0.26 1.21 16 37 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -39.48 323.44 -8.55 -48.03 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.84 Total: 8.37 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.70 Total: -18.71 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.37 Total: -41.90 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.74 Total: -32.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 17.15 SS G_CDS: -1.50 Total: 15.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -39.48 -8.55 -48.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187866001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -39.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds