Wall clock time and date at job start Tue Mar 31 2020 06:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 H 1.09005 * 109.46909 * 305.00260 * 3 2 1 5 5 C 1.50694 * 109.47218 * 185.00104 * 3 2 1 6 6 H 1.07999 * 119.99886 * 239.99715 * 5 3 2 7 7 C 1.37881 * 120.00031 * 60.00208 * 5 3 2 8 8 N 1.31511 * 119.99794 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99640 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47540 * 59.99906 * 9 7 5 11 11 H 1.48510 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47023 * 299.99448 * 9 7 5 13 13 N 1.46501 * 109.46887 * 64.99733 * 3 2 1 14 14 C 1.34776 * 120.00196 * 275.00253 * 13 3 2 15 15 O 1.21549 * 119.99999 * 355.32561 * 14 13 3 16 16 C 1.47850 * 120.00024 * 175.32603 * 14 13 3 17 17 C 1.39593 * 120.14027 * 253.74928 * 16 14 13 18 18 C 1.37936 * 119.85073 * 179.78957 * 17 16 14 19 19 C 1.38387 * 120.14229 * 0.48942 * 18 17 16 20 20 C 1.38335 * 120.29152 * 359.73947 * 19 18 17 21 21 C 1.37974 * 120.14782 * 0.02562 * 20 19 18 22 22 S 1.76198 * 120.07346 * 179.97438 * 21 20 19 23 23 C 1.81401 * 103.00053 * 96.23114 * 22 21 20 24 24 O 1.42104 * 102.99904 * 210.07933 * 22 21 20 25 25 H 1.09002 * 109.47615 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47515 * 60.00246 * 1 2 3 27 27 H 1.09003 * 109.47302 * 299.99760 * 1 2 3 28 28 H 1.09002 * 109.47333 * 120.00196 * 2 1 3 29 29 H 1.09006 * 109.47155 * 239.99734 * 2 1 3 30 30 H 0.97008 * 119.99714 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99901 * 95.00462 * 13 3 2 32 32 H 1.08005 * 120.07635 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.93150 * 180.23201 * 18 17 16 34 34 H 1.08006 * 119.85342 * 179.76715 * 19 18 17 35 35 H 1.08000 * 119.92336 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.47006 * 54.74849 * 23 22 21 37 37 H 1.08996 * 109.47044 * 174.74601 * 23 22 21 38 38 H 1.08994 * 109.46922 * 294.75437 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8799 -1.3811 10 1 6.5966 0.1451 -0.2344 11 1 6.3978 0.2155 -2.6499 12 1 6.5004 2.2798 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3086 2.7074 0.4065 16 6 0.0044 3.2339 2.6616 17 6 -0.9442 2.5678 3.4395 18 6 -1.3386 3.1024 4.6483 19 6 -0.8035 4.3014 5.0856 20 6 0.1334 4.9689 4.3172 21 6 0.5401 4.4426 3.1084 22 16 1.7330 5.2948 2.1309 23 6 3.2894 4.4814 2.5857 24 8 1.3783 4.9303 0.8040 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8292 -0.0619 -2.9496 31 1 2.2719 2.1231 1.9978 32 1 -1.3656 1.6341 3.0974 33 1 -2.0696 2.5863 5.2530 34 1 -1.1184 4.7177 6.0312 35 1 0.5474 5.9040 4.6644 36 1 3.1966 3.4066 2.4299 37 1 4.0971 4.8700 1.9656 38 1 3.5094 4.6788 3.6348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187866001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:27 Heat of formation + Delta-G solvation = -71.025671 kcal Electronic energy + Delta-G solvation = -22483.176102 eV Core-core repulsion = 19223.403962 eV Total energy + Delta-G solvation = -3259.772140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18643 -39.32681 -37.01194 -36.75415 -34.42728 -33.23414 -32.10610 -31.85529 -29.60380 -29.01657 -25.58044 -24.50323 -23.84528 -22.12624 -21.34544 -19.64368 -18.72640 -17.85210 -17.44180 -17.06051 -16.78647 -16.43675 -15.83939 -15.64904 -15.50897 -15.07856 -14.78991 -14.60945 -14.50507 -13.86977 -13.81000 -13.53211 -13.45379 -13.28781 -13.13866 -12.95048 -12.73293 -12.58338 -12.42413 -12.24210 -12.16791 -11.75464 -11.24028 -11.16869 -10.80027 -10.59909 -10.20927 -9.90453 -9.72772 -9.43310 -8.22646 -6.41227 -0.15040 0.26397 0.95218 1.35565 1.39775 1.47542 1.76393 1.86185 2.27967 2.50364 2.66815 3.05745 3.05857 3.75573 3.96340 4.11687 4.31088 4.35852 4.38985 4.43168 4.47282 4.58968 4.59652 4.71647 4.90075 4.95386 5.09305 5.21125 5.23814 5.29222 5.32233 5.43266 5.44458 5.54802 5.66289 5.83958 5.95816 6.06414 6.64502 6.84050 7.24519 7.48009 8.83577 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.005953 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.702009 B = 4702.698064 C = 5578.958417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.284 3.716 4 H -0.016 1.016 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.975 3.025 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.700 5.700 14 C 0.549 3.451 15 O -0.582 6.582 16 C -0.092 4.092 17 C -0.126 4.126 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.030 4.030 21 C -0.452 4.452 22 S 1.373 4.627 23 C -0.499 4.499 24 O -0.909 6.909 25 H 0.056 0.944 26 H 0.020 0.980 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.392 0.608 32 H 0.110 0.890 33 H 0.160 0.840 34 H 0.180 0.820 35 H 0.200 0.800 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 11.941 22.401 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.181 3.819 4 H 0.002 0.998 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.351 5.351 14 C 0.336 3.664 15 O -0.463 6.463 16 C -0.096 4.096 17 C -0.146 4.146 18 C -0.101 4.101 19 C -0.133 4.133 20 C -0.048 4.048 21 C -0.549 4.549 22 S 1.571 4.429 23 C -0.656 4.656 24 O -0.905 6.905 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.128 0.872 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.217 0.783 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.312 12.567 20.856 24.574 hybrid contribution 0.762 -2.798 -1.308 3.181 sum -2.550 9.769 19.548 22.002 Atomic orbital electron populations 1.21657 0.97316 0.99510 0.99600 1.21799 0.93564 0.99062 1.01520 1.18298 0.93977 0.88673 0.80994 0.99771 1.21449 0.90972 1.39172 1.06962 0.91518 1.25873 1.03977 0.94188 0.94700 1.70060 1.37385 1.38207 1.09847 0.85367 0.78293 0.78552 0.77955 1.18362 1.20685 1.19647 1.46353 1.14870 1.56564 1.17270 1.18859 0.82055 0.77150 0.88322 1.90680 1.55482 1.59325 1.40810 1.20028 0.99467 0.96987 0.93105 1.21301 0.96877 1.00231 0.96156 1.21658 0.98338 0.96433 0.93629 1.22000 0.95813 0.94057 1.01420 1.21508 0.94111 1.00140 0.89070 1.28132 1.14788 1.03046 1.08908 1.68125 0.83463 1.07909 0.83377 1.27905 1.16984 1.08907 1.11846 1.93241 1.80328 1.81643 1.35273 0.92491 0.96071 0.94621 0.93836 0.90500 0.92482 0.77186 0.87200 0.82220 0.80241 0.78338 0.92339 0.87462 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.31 8.58 71.98 0.62 -5.69 16 2 C -0.12 -6.64 5.45 30.59 0.17 -6.47 16 3 C 0.28 16.73 2.25 44.24 0.10 16.83 16 4 H -0.02 -1.12 7.51 -2.38 -0.02 -1.14 16 5 C -0.55 -31.98 8.73 25.60 0.22 -31.75 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.01 0.72 5.29 84.66 0.45 1.17 16 8 N -0.92 -56.43 11.29 21.45 0.24 -56.18 16 9 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.70 -34.85 4.51 -448.98 -2.03 -36.87 16 14 C 0.55 27.15 2.78 86.79 0.24 27.39 16 15 O -0.58 -35.05 14.45 5.81 0.08 -34.97 16 16 C -0.09 -3.35 5.62 -20.09 -0.11 -3.46 16 17 C -0.13 -3.79 9.79 22.53 0.22 -3.57 16 18 C -0.08 -1.54 10.03 22.23 0.22 -1.31 16 19 C -0.11 -1.41 10.04 22.33 0.22 -1.19 16 20 C -0.03 -0.41 9.74 22.23 0.22 -0.19 16 21 C -0.45 -11.78 5.61 22.52 0.13 -11.65 16 22 S 1.37 35.27 13.91 -56.49 -0.79 34.48 16 23 C -0.50 -11.77 10.70 113.37 1.21 -10.55 16 24 O -0.91 -42.33 14.87 -139.29 -2.07 -44.40 16 25 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.02 1.15 7.91 -2.39 -0.02 1.14 16 27 H 0.03 1.77 5.74 -2.39 -0.01 1.75 16 28 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.08 4.62 5.95 -2.38 -0.01 4.60 16 30 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 31 H 0.39 17.11 5.90 -92.71 -0.55 16.57 16 32 H 0.11 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.20 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.06 1.85 5.08 -2.39 -0.01 1.84 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 38 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -99.10 323.44 1.91 -97.20 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.53 Total: 24.66 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.91 Total: -30.46 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -1.78 Total: -93.06 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -1.99 Total: -79.37 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 35.27 SS G_CDS: -0.79 Total: 34.48 kcal Total: -99.10 1.91 -97.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187866001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.170 kcal (2) G-P(sol) polarization free energy of solvation -99.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds