Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00236 * 2 1 4 4 C 1.53004 * 109.47304 * 124.99623 * 3 2 1 5 5 N 1.46495 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00034 * 84.99933 * 5 4 3 7 7 C 1.50707 * 109.47012 * 84.99956 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00154 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.98090 * 7 6 5 13 13 S 1.65603 * 120.00270 * 265.00479 * 5 4 3 14 14 O 1.42102 * 106.40104 * 29.99458 * 13 5 4 15 15 O 1.42096 * 106.40561 * 162.91946 * 13 5 4 16 16 C 1.76208 * 107.21537 * 276.46068 * 13 5 4 17 17 H 1.08001 * 120.00054 * 246.45994 * 16 13 5 18 18 C 1.37878 * 119.99853 * 66.45390 * 16 13 5 19 19 N 1.31517 * 120.00128 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99760 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47241 * 60.00322 * 20 18 16 22 22 H 1.48499 * 109.47027 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46946 * 300.00431 * 20 18 16 24 24 H 1.07997 * 120.00282 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00151 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99844 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46713 * 4.99804 * 3 2 1 28 28 H 1.08993 * 109.47004 * 245.00183 * 3 2 1 29 29 H 1.09003 * 109.46884 * 59.99905 * 4 3 2 30 30 H 1.08999 * 109.47200 * 300.00468 * 4 3 2 31 31 H 1.09005 * 109.47643 * 325.00416 * 6 5 4 32 32 H 1.09000 * 109.47513 * 204.99580 * 6 5 4 33 33 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 36 36 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 37 37 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 38 38 H 0.97003 * 119.99437 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7671 2.6020 1.1820 6 6 3.1814 3.7854 1.8166 7 6 3.4935 3.7711 3.2909 8 6 4.6453 4.3751 3.7594 9 6 4.9313 4.3625 5.1118 10 6 4.0653 3.7464 5.9957 11 6 2.9162 3.1377 5.5266 12 6 2.6278 3.1544 4.1747 13 16 5.2567 2.6988 0.4649 14 8 5.2543 1.7517 -0.5945 15 8 5.5194 4.0817 0.2705 16 6 6.4392 2.1280 1.6399 17 1 7.1666 2.8128 2.0503 18 6 6.4358 0.8072 2.0355 19 7 5.5502 -0.0267 1.5355 20 14 7.6890 0.2023 3.2817 21 1 7.5295 0.9572 4.5505 22 1 7.4752 -1.2450 3.5361 23 1 9.0589 0.4137 2.7487 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4025 -0.9313 29 1 3.7399 0.5065 1.0922 30 1 2.4772 1.2356 2.1131 31 1 2.1007 3.7770 1.6739 32 1 3.6005 4.6847 1.3652 33 1 5.3217 4.8569 3.0689 34 1 5.8313 4.8340 5.4778 35 1 4.2886 3.7369 7.0524 36 1 2.2418 2.6526 6.2166 37 1 1.7276 2.6832 3.8088 38 1 5.5481 -0.9560 1.8136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -48.973371 kcal Electronic energy + Delta-G solvation = -22619.645589 eV Core-core repulsion = 19360.829709 eV Total energy + Delta-G solvation = -3258.815880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.84424 -36.21755 -35.43835 -33.97072 -33.90944 -33.16729 -30.93058 -30.43847 -28.08405 -26.18501 -25.03136 -22.37369 -21.81742 -20.71616 -19.36812 -18.73850 -17.15231 -16.35691 -15.94273 -15.51597 -15.21221 -14.86289 -14.61743 -14.33722 -13.98197 -13.44027 -13.13498 -12.99686 -12.90396 -12.36931 -12.06716 -11.91673 -11.84455 -11.39598 -11.24498 -11.18083 -10.95766 -10.79345 -10.70951 -10.56657 -10.52168 -10.27549 -10.04717 -9.82916 -9.32792 -9.11177 -8.86427 -8.45080 -8.29712 -7.81539 -6.73525 -5.38305 1.77060 1.87206 2.45148 2.67283 3.04549 3.08442 3.16080 3.96601 4.23594 4.45305 4.84941 5.26696 5.28136 5.36088 5.39958 5.54088 5.57870 5.74111 5.84047 5.89356 5.94854 6.07123 6.12171 6.20118 6.28425 6.34300 6.41222 6.44988 6.50053 6.66630 6.86353 6.92318 6.94950 7.03818 7.08506 7.17852 7.23433 7.46583 7.57376 7.77933 8.10854 8.83583 10.09430 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.008920 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.596377 B = 3138.361569 C = 4115.893844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.113 3.887 5 N -0.992 5.992 6 C 0.157 3.843 7 C -0.088 4.088 8 C -0.094 4.094 9 C -0.122 4.122 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.106 4.106 13 S 2.699 3.301 14 O -0.987 6.987 15 O -1.034 7.034 16 C -0.999 4.999 17 H 0.106 0.894 18 C 0.138 3.862 19 N -0.829 5.829 20 Si 0.912 3.088 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.265 1.265 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 1.773 5.959 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.142 4.142 3 C -0.157 4.157 4 C -0.013 4.013 5 N -0.822 5.822 6 C 0.031 3.969 7 C -0.090 4.090 8 C -0.113 4.113 9 C -0.140 4.140 10 C -0.147 4.147 11 C -0.148 4.148 12 C -0.125 4.125 13 S 2.802 3.198 14 O -0.978 6.978 15 O -1.025 7.025 16 C -1.134 5.134 17 H 0.124 0.876 18 C -0.080 4.080 19 N -0.459 5.459 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.189 1.189 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.128 0.872 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.333 1.899 5.033 9.095 hybrid contribution 0.678 -0.736 1.502 1.805 sum -6.655 1.164 6.535 9.400 Atomic orbital electron populations 1.23688 0.95945 1.01003 1.05134 1.23024 0.95637 0.99193 0.96366 1.21318 0.98575 0.94056 1.01712 1.21797 0.96320 0.88232 0.94931 1.58041 1.36982 1.14438 1.72701 1.20066 0.98832 0.89935 0.88115 1.20440 0.94906 0.97000 0.96644 1.21203 0.96169 0.98366 0.95520 1.21076 0.99115 1.00184 0.93644 1.21016 0.95264 0.99303 0.99089 1.21002 0.97655 1.00534 0.95562 1.20965 0.99522 0.98964 0.93040 1.00659 0.72469 0.71329 0.75362 1.93394 1.86523 1.63361 1.54506 1.93312 1.85450 1.36033 1.87739 1.31037 1.31593 1.03223 1.47560 0.87618 1.24710 0.94588 0.95108 0.93567 1.69473 1.32133 1.06330 1.38012 0.86299 0.81377 0.77732 0.80972 1.18823 1.20199 1.18910 0.89168 0.89172 0.87227 0.92797 0.90144 0.83962 0.93322 0.91103 0.89022 0.85503 0.86574 0.86932 0.86861 0.86644 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.98 14.32 29.02 0.42 -2.56 16 2 C -0.12 -1.94 9.52 -36.03 -0.34 -2.29 16 3 C -0.12 -2.11 5.98 -27.88 -0.17 -2.27 16 4 C 0.11 2.27 5.19 -4.04 -0.02 2.25 16 5 N -0.99 -21.19 2.77 -115.66 -0.32 -21.51 16 6 C 0.16 2.88 5.78 -5.19 -0.03 2.85 16 7 C -0.09 -1.58 5.46 -104.62 -0.57 -2.15 16 8 C -0.09 -1.72 9.70 -39.58 -0.38 -2.10 16 9 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 10 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 11 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 12 C -0.11 -1.71 9.37 -39.58 -0.37 -2.08 16 13 S 2.70 69.15 5.28 -107.50 -0.57 68.58 16 14 O -0.99 -27.79 16.16 -57.17 -0.92 -28.72 16 15 O -1.03 -27.46 16.47 -57.17 -0.94 -28.40 16 16 C -1.00 -26.24 9.77 30.60 0.30 -25.94 16 17 H 0.11 2.74 7.81 -52.49 -0.41 2.33 16 18 C 0.14 3.48 5.44 -17.82 -0.10 3.38 16 19 N -0.83 -20.71 9.25 55.43 0.51 -20.19 16 20 Si 0.91 19.66 29.54 -169.99 -5.02 14.63 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 24 H 0.09 1.14 7.84 -52.49 -0.41 0.73 16 25 H 0.09 1.06 8.06 -52.48 -0.42 0.64 16 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.05 0.87 7.79 -51.93 -0.40 0.47 16 28 H 0.08 1.61 7.96 -51.93 -0.41 1.19 16 29 H 0.14 3.23 4.35 -51.93 -0.23 3.00 16 30 H 0.05 0.90 7.60 -51.93 -0.39 0.51 16 31 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 32 H 0.09 1.71 6.82 -51.93 -0.35 1.36 16 33 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.12 1.67 7.89 -52.49 -0.41 1.25 16 38 H 0.29 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -29.68 334.23 -9.81 -39.49 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.12 Total: 9.04 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: -2.46 Total: -37.95 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.19 Total: -41.71 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -1.87 Total: -57.12 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 69.15 SS G_CDS: -0.57 Total: 68.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.68 -9.81 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.486 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds