Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00236 * 2 1 4 4 C 1.53004 * 109.47304 * 124.99623 * 3 2 1 5 5 N 1.46495 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00034 * 84.99933 * 5 4 3 7 7 C 1.50707 * 109.47012 * 84.99956 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00154 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.98090 * 7 6 5 13 13 S 1.65603 * 120.00270 * 265.00479 * 5 4 3 14 14 O 1.42102 * 106.40104 * 29.99458 * 13 5 4 15 15 O 1.42096 * 106.40561 * 162.91946 * 13 5 4 16 16 C 1.76208 * 107.21537 * 276.46068 * 13 5 4 17 17 H 1.08001 * 120.00054 * 246.45994 * 16 13 5 18 18 C 1.37878 * 119.99853 * 66.45390 * 16 13 5 19 19 N 1.31517 * 120.00128 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99760 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47241 * 60.00322 * 20 18 16 22 22 H 1.48499 * 109.47027 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46946 * 300.00431 * 20 18 16 24 24 H 1.07997 * 120.00282 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00151 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99844 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46713 * 4.99804 * 3 2 1 28 28 H 1.08993 * 109.47004 * 245.00183 * 3 2 1 29 29 H 1.09003 * 109.46884 * 59.99905 * 4 3 2 30 30 H 1.08999 * 109.47200 * 300.00468 * 4 3 2 31 31 H 1.09005 * 109.47643 * 325.00416 * 6 5 4 32 32 H 1.09000 * 109.47513 * 204.99580 * 6 5 4 33 33 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 35 35 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 36 36 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 37 37 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 38 38 H 0.97003 * 119.99437 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7671 2.6020 1.1820 6 6 3.1814 3.7854 1.8166 7 6 3.4935 3.7711 3.2909 8 6 4.6453 4.3751 3.7594 9 6 4.9313 4.3625 5.1118 10 6 4.0653 3.7464 5.9957 11 6 2.9162 3.1377 5.5266 12 6 2.6278 3.1544 4.1747 13 16 5.2567 2.6988 0.4649 14 8 5.2543 1.7517 -0.5945 15 8 5.5194 4.0817 0.2705 16 6 6.4392 2.1280 1.6399 17 1 7.1666 2.8128 2.0503 18 6 6.4358 0.8072 2.0355 19 7 5.5502 -0.0267 1.5355 20 14 7.6890 0.2023 3.2817 21 1 7.5295 0.9572 4.5505 22 1 7.4752 -1.2450 3.5361 23 1 9.0589 0.4137 2.7487 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4025 -0.9313 29 1 3.7399 0.5065 1.0922 30 1 2.4772 1.2356 2.1131 31 1 2.1007 3.7770 1.6739 32 1 3.6005 4.6847 1.3652 33 1 5.3217 4.8569 3.0689 34 1 5.8313 4.8340 5.4778 35 1 4.2886 3.7369 7.0524 36 1 2.2418 2.6526 6.2166 37 1 1.7276 2.6832 3.8088 38 1 5.5481 -0.9560 1.8136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -66.416732 kcal Electronic energy + Delta-G solvation = -22620.401990 eV Core-core repulsion = 19360.829709 eV Total energy + Delta-G solvation = -3259.572281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12002 -37.76869 -37.42935 -36.08509 -35.26901 -35.06664 -32.26305 -31.67096 -29.46716 -28.15922 -26.44984 -23.75947 -23.15081 -22.07195 -20.79274 -20.46442 -18.95491 -17.98344 -17.49997 -17.37516 -16.82648 -16.18835 -15.94257 -15.74129 -15.70883 -15.20334 -14.63866 -14.29266 -14.17218 -13.99084 -13.52587 -13.38966 -13.30211 -13.11726 -13.01871 -12.88929 -12.61858 -12.47983 -12.30178 -12.18296 -12.09298 -11.79562 -11.67017 -11.53527 -11.19823 -10.86697 -10.22589 -9.69782 -9.61435 -9.41376 -8.60959 -7.37424 0.37402 0.62355 0.67733 1.32997 1.35991 1.45309 1.50822 2.20051 2.53348 2.87788 3.17526 3.83543 3.96747 4.04390 4.12539 4.23600 4.26286 4.33767 4.36718 4.46332 4.59022 4.66941 4.70848 4.79602 4.87098 4.93227 5.02545 5.14540 5.21335 5.25969 5.32954 5.44124 5.66289 5.70277 5.80531 5.82925 5.86327 5.95928 6.00884 6.23367 6.31440 6.87614 8.22657 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.008920 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.596377 B = 3138.361569 C = 4115.893844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.110 4.110 4 C 0.111 3.889 5 N -0.988 5.988 6 C 0.154 3.846 7 C -0.107 4.107 8 C -0.122 4.122 9 C -0.133 4.133 10 C -0.127 4.127 11 C -0.128 4.128 12 C -0.111 4.111 13 S 2.704 3.296 14 O -1.022 7.022 15 O -1.055 7.055 16 C -1.027 5.027 17 H 0.097 0.903 18 C 0.099 3.901 19 N -0.840 5.840 20 Si 0.963 3.037 21 H -0.259 1.259 22 H -0.257 1.257 23 H -0.267 1.267 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 0.666 8.346 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.174 4.174 3 C -0.149 4.149 4 C -0.014 4.014 5 N -0.821 5.821 6 C 0.028 3.972 7 C -0.109 4.109 8 C -0.141 4.141 9 C -0.151 4.151 10 C -0.145 4.145 11 C -0.145 4.145 12 C -0.129 4.129 13 S 2.807 3.193 14 O -1.012 7.012 15 O -1.046 7.046 16 C -1.162 5.162 17 H 0.115 0.885 18 C -0.118 4.118 19 N -0.470 5.470 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.180 1.180 23 H -0.192 1.192 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.282 0.794 7.403 11.899 hybrid contribution 1.173 -0.371 0.774 1.454 sum -8.109 0.423 8.177 11.524 Atomic orbital electron populations 1.23949 0.94933 1.02707 1.00766 1.22847 0.96490 0.97778 1.00284 1.21176 0.98318 0.96264 0.99143 1.21797 0.96104 0.86692 0.96802 1.57600 1.35717 1.15950 1.72817 1.20249 1.00297 0.88059 0.88571 1.20426 0.95628 0.98395 0.96428 1.21216 0.96600 0.99805 0.96443 1.21337 1.00221 1.00537 0.93018 1.21424 0.94658 0.97915 1.00464 1.21431 0.97927 0.99660 0.95524 1.21213 0.99709 0.98483 0.93539 1.00218 0.73442 0.70432 0.75189 1.93339 1.87424 1.64147 1.56310 1.93267 1.86208 1.36976 1.88159 1.31059 1.32822 1.04222 1.48052 0.88458 1.25436 0.96350 0.94870 0.95133 1.69574 1.32454 1.06843 1.38114 0.85527 0.78895 0.78343 0.78819 1.18339 1.18037 1.19165 0.87858 0.86898 0.87852 0.90923 0.93307 0.86431 0.91469 0.87887 0.90380 0.87858 0.85106 0.83738 0.83538 0.84792 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.41 14.32 67.78 0.97 -3.44 16 2 C -0.16 -4.67 9.52 25.65 0.24 -4.43 16 3 C -0.11 -3.90 5.98 29.85 0.18 -3.72 16 4 C 0.11 4.46 5.19 86.38 0.45 4.91 16 5 N -0.99 -42.92 2.77 -519.84 -1.44 -44.36 16 6 C 0.15 5.66 5.78 85.64 0.50 6.16 16 7 C -0.11 -3.80 5.46 -19.86 -0.11 -3.91 16 8 C -0.12 -4.54 9.70 22.27 0.22 -4.33 16 9 C -0.13 -4.21 10.05 22.27 0.22 -3.98 16 10 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 11 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 12 C -0.11 -3.31 9.37 22.27 0.21 -3.10 16 13 S 2.70 144.25 5.28 -56.49 -0.30 143.95 16 14 O -1.02 -60.08 16.16 -128.00 -2.07 -62.15 16 15 O -1.05 -58.83 16.47 -128.00 -2.11 -60.94 16 16 C -1.03 -55.65 9.77 67.73 0.66 -54.98 16 17 H 0.10 5.28 7.81 -2.91 -0.02 5.25 16 18 C 0.10 5.01 5.44 84.65 0.46 5.47 16 19 N -0.84 -42.28 9.25 21.45 0.20 -42.08 16 20 Si 0.96 39.71 29.54 68.60 2.03 41.73 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 24 H 0.10 2.19 7.84 -2.91 -0.02 2.17 16 25 H 0.11 2.19 8.06 -2.91 -0.02 2.17 16 26 H 0.10 3.19 8.06 -2.91 -0.02 3.17 16 27 H 0.07 2.23 7.79 -2.38 -0.02 2.22 16 28 H 0.05 2.01 7.96 -2.39 -0.02 1.99 16 29 H 0.12 5.42 4.35 -2.39 -0.01 5.41 16 30 H 0.07 2.40 7.60 -2.39 -0.02 2.38 16 31 H 0.10 3.05 8.05 -2.38 -0.02 3.03 16 32 H 0.08 3.04 6.82 -2.39 -0.02 3.03 16 33 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.13 3.41 7.89 -2.91 -0.02 3.39 16 38 H 0.30 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -65.81 334.23 1.80 -64.02 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 1.04 Total: 31.49 kcal Atomic # 6 Polarization: -76.10 SS G_CDS: 4.45 Total: -71.65 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.24 Total: -86.45 kcal Atomic # 8 Polarization: -118.92 SS G_CDS: -4.18 Total: -123.09 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 144.25 SS G_CDS: -0.30 Total: 143.95 kcal Total: -65.81 1.80 -64.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.400 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds