Wall clock time and date at job start Tue Mar 31 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47352 * 2 1 4 4 H 1.08994 * 109.43871 * 181.68815 * 3 2 1 5 5 C 1.50814 * 109.43580 * 61.77239 * 3 2 1 6 6 C 1.38834 * 117.80000 * 49.05045 * 5 3 2 7 7 C 1.37957 * 120.50658 * 179.72204 * 6 5 3 8 8 C 1.38268 * 119.71847 * 359.26670 * 7 6 5 9 9 C 1.37915 * 119.82076 * 0.75327 * 8 7 6 10 10 C 1.37671 * 122.35110 * 228.62454 * 5 3 2 11 11 C 1.50596 * 122.86364 * 1.20731 * 10 5 3 12 12 C 1.52794 * 110.85350 * 339.97446 * 11 10 5 13 13 N 1.46684 * 109.40266 * 301.58599 * 3 2 1 14 14 S 1.65598 * 121.34036 * 344.40709 * 13 3 2 15 15 O 1.42091 * 106.40575 * 211.76783 * 14 13 3 16 16 O 1.42108 * 106.40102 * 344.69173 * 14 13 3 17 17 C 1.76205 * 107.21505 * 98.22511 * 14 13 3 18 18 H 1.08004 * 119.99907 * 5.23401 * 17 14 13 19 19 C 1.37877 * 119.99835 * 185.23191 * 17 14 13 20 20 N 1.31509 * 120.00108 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99742 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.46932 * 90.00347 * 21 19 17 23 23 H 1.48502 * 109.46720 * 209.99916 * 21 19 17 24 24 H 1.48495 * 109.47092 * 330.00277 * 21 19 17 25 25 H 1.09001 * 109.47282 * 27.74061 * 1 2 3 26 26 H 1.08999 * 109.47602 * 147.73888 * 1 2 3 27 27 H 1.09006 * 109.47241 * 267.74178 * 1 2 3 28 28 H 1.09001 * 109.47032 * 239.99928 * 2 1 3 29 29 H 1.09002 * 109.46921 * 120.00434 * 2 1 3 30 30 H 1.08002 * 119.74967 * 359.44212 * 6 5 3 31 31 H 1.08007 * 120.14509 * 179.52308 * 7 6 5 32 32 H 1.07992 * 120.09104 * 180.47829 * 8 7 6 33 33 H 1.07992 * 119.70711 * 179.79374 * 9 8 7 34 34 H 1.08993 * 109.20013 * 219.62137 * 11 10 5 35 35 H 1.08997 * 109.16794 * 100.29846 * 11 10 5 36 36 H 1.09009 * 109.77262 * 287.87965 * 12 11 10 37 37 H 1.09001 * 109.82178 * 167.11089 * 12 11 10 38 38 H 0.97001 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4419 -0.0303 5 6 1.5731 2.1398 1.2531 6 6 1.7707 1.4934 2.4657 7 6 1.3704 2.0829 3.6470 8 6 0.7816 3.3338 3.6237 9 6 0.5843 3.9766 2.4196 10 6 0.9758 3.3799 1.2270 11 6 0.7133 4.1338 -0.0500 12 6 1.5994 3.6136 -1.1808 13 7 1.5192 2.1434 -1.1786 14 16 0.8669 1.3146 -2.4553 15 8 1.1526 2.0795 -3.6182 16 8 1.2647 -0.0407 -2.2992 17 6 -0.8837 1.3452 -2.2571 18 1 -1.3266 1.9200 -1.4572 19 6 -1.6880 0.6354 -3.1233 20 7 -1.1486 -0.0648 -4.0970 21 14 -3.5439 0.6684 -2.9136 22 1 -4.1111 1.7920 -3.7016 23 1 -4.1192 -0.6134 -3.3945 24 1 -3.8767 0.8529 -1.4782 25 1 -0.3634 0.9095 -0.4783 26 1 -0.3634 -0.8690 -0.5485 27 1 -0.3634 -0.0405 1.0269 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2373 0.5195 2.4842 31 1 1.5200 1.5714 4.5864 32 1 0.4729 3.8042 4.5455 33 1 0.1213 4.9521 2.4032 34 1 0.9201 5.1920 0.1096 35 1 -0.3331 4.0112 -0.3293 36 1 2.6303 3.9269 -1.0154 37 1 1.2451 4.0009 -2.1360 38 1 -1.7144 -0.5645 -4.7062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192967284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:45 Heat of formation + Delta-G solvation = -36.021253 kcal Electronic energy + Delta-G solvation = -23347.189198 eV Core-core repulsion = 20088.934964 eV Total energy + Delta-G solvation = -3258.254234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90678 -36.67803 -35.72427 -34.11037 -33.44253 -33.16444 -30.87489 -30.15448 -28.43510 -26.42927 -24.72137 -23.29485 -22.54855 -20.52051 -19.79038 -18.52648 -17.12570 -16.72466 -16.09240 -15.33743 -15.31726 -14.97656 -14.41655 -14.12497 -13.99981 -13.45773 -13.33269 -13.13489 -12.72934 -12.37996 -12.10464 -12.06120 -11.95231 -11.57516 -11.33491 -11.19089 -10.97222 -10.78378 -10.67348 -10.63316 -10.41833 -10.20363 -10.15794 -9.89120 -9.15513 -9.02451 -8.65840 -8.49801 -8.29128 -8.15019 -6.69991 -5.23888 1.60399 1.61848 2.22147 3.05844 3.13341 3.19787 3.98048 4.04523 4.43665 4.63450 4.97104 5.03328 5.15967 5.21442 5.41216 5.47435 5.60716 5.66821 5.71839 5.76162 5.86364 5.97914 6.02620 6.11550 6.20717 6.24379 6.32062 6.47470 6.50626 6.59671 6.69373 6.72041 6.82236 6.96038 7.09889 7.24252 7.31444 7.48046 7.53351 7.67882 7.95713 8.87791 10.23343 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.006982 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.408367 B = 4009.308126 C = 4276.481320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 C 0.202 3.798 4 H 0.072 0.928 5 C -0.070 4.070 6 C -0.113 4.113 7 C -0.129 4.129 8 C -0.129 4.129 9 C -0.125 4.125 10 C -0.063 4.063 11 C -0.101 4.101 12 C 0.127 3.873 13 N -1.009 6.009 14 S 2.717 3.283 15 O -1.011 7.011 16 O -0.984 6.984 17 C -1.010 5.010 18 H 0.105 0.895 19 C 0.136 3.864 20 N -0.844 5.844 21 Si 0.913 3.087 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.262 1.262 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.155 0.845 29 H 0.055 0.945 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 5.549 11.874 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.221 4.221 3 C 0.096 3.904 4 H 0.090 0.910 5 C -0.071 4.071 6 C -0.131 4.131 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.143 4.143 10 C -0.063 4.063 11 C -0.140 4.140 12 C 0.000 4.000 13 N -0.843 5.843 14 S 2.821 3.179 15 O -1.001 7.001 16 O -0.975 6.975 17 C -1.143 5.143 18 H 0.123 0.877 19 C -0.082 4.082 20 N -0.474 5.474 21 Si 0.737 3.263 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.186 1.186 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.171 0.829 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.863 5.036 10.968 12.672 hybrid contribution -1.674 0.211 0.764 1.852 sum 2.190 5.246 11.731 13.036 Atomic orbital electron populations 1.22514 0.94542 1.06133 0.99954 1.23120 0.98683 0.93844 1.06413 1.19731 0.96802 0.91944 0.81966 0.91042 1.20012 0.97910 0.93964 0.95225 1.21104 1.00455 0.99771 0.91794 1.20980 1.00173 0.95754 0.97769 1.20950 1.00529 0.95688 0.97506 1.21130 1.00959 1.00038 0.92166 1.19519 0.97789 0.94242 0.94778 1.20900 1.01805 0.98514 0.92745 1.21191 0.99303 0.80486 0.98996 1.58306 1.77812 1.14079 1.34098 1.00541 0.75782 0.71935 0.69674 1.93333 1.87193 1.72826 1.46770 1.93120 1.84542 1.35521 1.84275 1.30528 1.17593 1.42170 1.23990 0.87659 1.24640 1.01367 0.90507 0.91687 1.69885 1.38528 1.25065 1.13931 0.86269 0.81903 0.78423 0.79720 1.19266 1.20025 1.18594 0.88626 0.91849 0.95286 0.82859 0.92642 0.85988 0.86554 0.86699 0.86555 0.90405 0.89708 0.91799 0.88694 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 7.28 37.16 0.27 -3.42 16 2 C -0.18 -3.50 4.78 -26.74 -0.13 -3.63 16 3 C 0.20 3.66 3.16 -68.93 -0.22 3.44 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 5 C -0.07 -1.14 4.76 -104.55 -0.50 -1.64 16 6 C -0.11 -1.62 9.05 -39.46 -0.36 -1.98 16 7 C -0.13 -1.64 10.05 -39.67 -0.40 -2.04 16 8 C -0.13 -1.61 10.05 -39.69 -0.40 -2.01 16 9 C -0.12 -1.68 9.59 -39.42 -0.38 -2.06 16 10 C -0.06 -0.98 5.76 -104.60 -0.60 -1.58 16 11 C -0.10 -1.51 5.87 -28.04 -0.16 -1.68 16 12 C 0.13 2.15 6.44 -3.75 -0.02 2.13 16 13 N -1.01 -20.40 2.76 -107.91 -0.30 -20.70 16 14 S 2.72 69.51 4.22 -107.50 -0.45 69.06 16 15 O -1.01 -28.93 16.97 -57.17 -0.97 -29.90 16 16 O -0.98 -26.37 12.25 -57.17 -0.70 -27.07 16 17 C -1.01 -26.43 6.84 30.60 0.21 -26.22 16 18 H 0.11 2.58 6.99 -52.48 -0.37 2.21 16 19 C 0.14 3.64 5.46 -17.82 -0.10 3.55 16 20 N -0.84 -23.98 13.09 55.43 0.73 -23.26 16 21 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 25 H 0.10 2.16 2.78 -50.86 -0.14 2.02 16 26 H 0.06 1.45 8.00 -51.93 -0.42 1.03 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.15 3.35 4.78 -56.25 -0.27 3.09 16 29 H 0.06 0.90 6.58 -51.93 -0.34 0.55 16 30 H 0.12 1.58 6.70 -52.49 -0.35 1.23 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.31 8.05 -52.49 -0.42 0.89 16 34 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.09 1.67 7.26 -51.93 -0.38 1.29 16 38 H 0.29 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -31.92 305.47 -9.68 -41.60 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.78 Total: 7.63 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: -2.79 Total: -37.15 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.43 Total: -43.95 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -1.67 Total: -56.97 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 69.51 SS G_CDS: -0.45 Total: 69.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.92 -9.68 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192967284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.580 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds