Wall clock time and date at job start Tue Mar 31 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47352 * 2 1 4 4 H 1.08994 * 109.43871 * 181.68815 * 3 2 1 5 5 C 1.50814 * 109.43580 * 61.77239 * 3 2 1 6 6 C 1.38834 * 117.80000 * 49.05045 * 5 3 2 7 7 C 1.37957 * 120.50658 * 179.72204 * 6 5 3 8 8 C 1.38268 * 119.71847 * 359.26670 * 7 6 5 9 9 C 1.37915 * 119.82076 * 0.75327 * 8 7 6 10 10 C 1.37671 * 122.35110 * 228.62454 * 5 3 2 11 11 C 1.50596 * 122.86364 * 1.20731 * 10 5 3 12 12 C 1.52794 * 110.85350 * 339.97446 * 11 10 5 13 13 N 1.46684 * 109.40266 * 301.58599 * 3 2 1 14 14 S 1.65598 * 121.34036 * 344.40709 * 13 3 2 15 15 O 1.42091 * 106.40575 * 211.76783 * 14 13 3 16 16 O 1.42108 * 106.40102 * 344.69173 * 14 13 3 17 17 C 1.76205 * 107.21505 * 98.22511 * 14 13 3 18 18 H 1.08004 * 119.99907 * 5.23401 * 17 14 13 19 19 C 1.37877 * 119.99835 * 185.23191 * 17 14 13 20 20 N 1.31509 * 120.00108 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99742 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.46932 * 90.00347 * 21 19 17 23 23 H 1.48502 * 109.46720 * 209.99916 * 21 19 17 24 24 H 1.48495 * 109.47092 * 330.00277 * 21 19 17 25 25 H 1.09001 * 109.47282 * 27.74061 * 1 2 3 26 26 H 1.08999 * 109.47602 * 147.73888 * 1 2 3 27 27 H 1.09006 * 109.47241 * 267.74178 * 1 2 3 28 28 H 1.09001 * 109.47032 * 239.99928 * 2 1 3 29 29 H 1.09002 * 109.46921 * 120.00434 * 2 1 3 30 30 H 1.08002 * 119.74967 * 359.44212 * 6 5 3 31 31 H 1.08007 * 120.14509 * 179.52308 * 7 6 5 32 32 H 1.07992 * 120.09104 * 180.47829 * 8 7 6 33 33 H 1.07992 * 119.70711 * 179.79374 * 9 8 7 34 34 H 1.08993 * 109.20013 * 219.62137 * 11 10 5 35 35 H 1.08997 * 109.16794 * 100.29846 * 11 10 5 36 36 H 1.09009 * 109.77262 * 287.87965 * 12 11 10 37 37 H 1.09001 * 109.82178 * 167.11089 * 12 11 10 38 38 H 0.97001 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4419 -0.0303 5 6 1.5731 2.1398 1.2531 6 6 1.7707 1.4934 2.4657 7 6 1.3704 2.0829 3.6470 8 6 0.7816 3.3338 3.6237 9 6 0.5843 3.9766 2.4196 10 6 0.9758 3.3799 1.2270 11 6 0.7133 4.1338 -0.0500 12 6 1.5994 3.6136 -1.1808 13 7 1.5192 2.1434 -1.1786 14 16 0.8669 1.3146 -2.4553 15 8 1.1526 2.0795 -3.6182 16 8 1.2647 -0.0407 -2.2992 17 6 -0.8837 1.3452 -2.2571 18 1 -1.3266 1.9200 -1.4572 19 6 -1.6880 0.6354 -3.1233 20 7 -1.1486 -0.0648 -4.0970 21 14 -3.5439 0.6684 -2.9136 22 1 -4.1111 1.7920 -3.7016 23 1 -4.1192 -0.6134 -3.3945 24 1 -3.8767 0.8529 -1.4782 25 1 -0.3634 0.9095 -0.4783 26 1 -0.3634 -0.8690 -0.5485 27 1 -0.3634 -0.0405 1.0269 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2373 0.5195 2.4842 31 1 1.5200 1.5714 4.5864 32 1 0.4729 3.8042 4.5455 33 1 0.1213 4.9521 2.4032 34 1 0.9201 5.1920 0.1096 35 1 -0.3331 4.0112 -0.3293 36 1 2.6303 3.9269 -1.0154 37 1 1.2451 4.0009 -2.1360 38 1 -1.7144 -0.5645 -4.7062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192967284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:45 Heat of formation + Delta-G solvation = -57.045057 kcal Electronic energy + Delta-G solvation = -23348.100859 eV Core-core repulsion = 20088.934964 eV Total energy + Delta-G solvation = -3259.165895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09517 -38.19998 -37.42870 -36.17377 -35.20202 -34.86842 -32.15763 -31.40285 -29.77299 -28.36097 -26.20835 -24.53878 -23.76845 -21.84574 -21.29112 -20.29432 -19.00435 -18.20033 -17.61787 -16.90587 -16.69140 -16.49231 -15.92317 -15.76074 -15.31104 -15.18378 -14.67515 -14.50443 -14.09860 -13.89382 -13.69408 -13.51117 -13.39043 -13.09006 -13.04893 -12.69823 -12.60017 -12.38802 -12.33251 -12.24849 -12.05006 -11.95209 -11.58151 -11.44370 -11.08982 -10.98153 -10.34723 -9.84868 -9.49950 -9.35432 -8.69723 -7.31560 0.31876 0.56870 0.58445 1.32023 1.33180 1.47573 2.20555 2.61661 2.77196 2.94271 3.72722 3.82633 3.83685 4.03053 4.14715 4.16715 4.33741 4.37186 4.39950 4.45000 4.52908 4.68489 4.68671 4.78997 4.86969 4.93086 5.08176 5.10862 5.21330 5.24065 5.28354 5.34301 5.38526 5.66326 5.71264 5.74972 5.84409 5.87929 5.99148 6.09103 6.24248 6.83022 8.25050 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.006982 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.408367 B = 4009.308126 C = 4276.481320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.200 3.800 4 H 0.085 0.915 5 C -0.091 4.091 6 C -0.122 4.122 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.128 4.128 10 C -0.082 4.082 11 C -0.096 4.096 12 C 0.116 3.884 13 N -1.007 6.007 14 S 2.718 3.282 15 O -1.054 7.054 16 O -1.007 7.007 17 C -1.017 5.017 18 H 0.116 0.884 19 C 0.080 3.920 20 N -0.892 5.892 21 Si 0.974 3.026 22 H -0.256 1.256 23 H -0.265 1.265 24 H -0.251 1.251 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 6.896 15.154 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.219 4.219 3 C 0.094 3.906 4 H 0.103 0.897 5 C -0.093 4.093 6 C -0.141 4.141 7 C -0.145 4.145 8 C -0.143 4.143 9 C -0.146 4.146 10 C -0.083 4.083 11 C -0.135 4.135 12 C -0.009 4.009 13 N -0.844 5.844 14 S 2.822 3.178 15 O -1.044 7.044 16 O -0.997 6.997 17 C -1.150 5.150 18 H 0.134 0.866 19 C -0.133 4.133 20 N -0.524 5.524 21 Si 0.794 3.206 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.174 1.174 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.106 0.894 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.125 6.390 14.244 15.921 hybrid contribution -1.350 -0.179 -0.141 1.369 sum 1.776 6.211 14.103 15.512 Atomic orbital electron populations 1.22382 0.95962 1.03905 1.00382 1.22956 0.97348 0.95146 1.06441 1.19845 0.97484 0.91109 0.82156 0.89701 1.19889 0.99934 0.94783 0.94668 1.21275 1.00784 1.00304 0.91724 1.21342 0.99003 0.95941 0.98223 1.21367 0.99143 0.95439 0.98359 1.21398 1.00503 1.00973 0.91678 1.19658 0.98633 0.94352 0.95628 1.20873 1.00317 1.00469 0.91809 1.21483 1.01408 0.78493 0.99528 1.57847 1.77478 1.15464 1.33621 1.00215 0.75942 0.71614 0.70003 1.93268 1.87706 1.73677 1.49758 1.93156 1.84753 1.36941 1.84898 1.30772 1.18217 1.41934 1.24049 0.86615 1.25724 1.06591 0.89880 0.91141 1.69977 1.40580 1.26506 1.15300 0.85344 0.75762 0.79158 0.80370 1.18069 1.18970 1.17407 0.90077 0.94754 0.93286 0.85871 0.89383 0.85037 0.83792 0.83681 0.84327 0.86941 0.91062 0.89383 0.90127 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.19 7.28 71.98 0.52 -6.66 16 2 C -0.18 -6.93 4.78 30.59 0.15 -6.78 16 3 C 0.20 7.10 3.16 44.24 0.14 7.24 16 4 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 5 C -0.09 -2.79 4.76 -19.82 -0.09 -2.89 16 6 C -0.12 -3.16 9.05 22.35 0.20 -2.95 16 7 C -0.13 -2.71 10.05 22.21 0.22 -2.49 16 8 C -0.13 -2.55 10.05 22.20 0.22 -2.33 16 9 C -0.13 -2.95 9.59 22.37 0.21 -2.73 16 10 C -0.08 -2.36 5.76 -19.85 -0.11 -2.47 16 11 C -0.10 -2.71 5.87 29.75 0.17 -2.54 16 12 C 0.12 3.91 6.44 86.17 0.55 4.46 16 13 N -1.01 -41.16 2.76 -495.33 -1.37 -42.53 16 14 S 2.72 144.39 4.22 -56.49 -0.24 144.15 16 15 O -1.05 -63.16 16.97 -128.00 -2.17 -65.33 16 16 O -1.01 -56.62 12.25 -128.00 -1.57 -58.19 16 17 C -1.02 -54.46 6.84 67.73 0.46 -54.00 16 18 H 0.12 5.74 6.99 -2.91 -0.02 5.72 16 19 C 0.08 4.34 5.46 84.66 0.46 4.80 16 20 N -0.89 -52.43 13.09 21.45 0.28 -52.15 16 21 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 25 H 0.08 3.70 2.78 -3.07 -0.01 3.69 16 26 H 0.03 1.60 8.00 -2.39 -0.02 1.58 16 27 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.12 5.59 4.78 -70.78 -0.34 5.26 16 29 H 0.09 2.73 6.58 -2.39 -0.02 2.72 16 30 H 0.13 3.01 6.70 -2.91 -0.02 2.99 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.14 2.51 8.05 -2.91 -0.02 2.48 16 34 H 0.11 2.32 8.11 -2.39 -0.02 2.30 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.08 2.91 7.26 -2.39 -0.02 2.89 16 38 H 0.30 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -71.82 305.47 0.82 -70.99 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.74 Total: 29.06 kcal Atomic # 6 Polarization: -72.44 SS G_CDS: 3.12 Total: -69.33 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -1.09 Total: -94.68 kcal Atomic # 8 Polarization: -119.79 SS G_CDS: -3.74 Total: -123.53 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 144.39 SS G_CDS: -0.24 Total: 144.15 kcal Total: -71.82 0.82 -70.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192967284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.947 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds