Wall clock time and date at job start Tue Mar 31 2020 07:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 110.08557 * 2 1 4 4 C 1.53203 * 110.10419 * 121.56697 * 2 1 3 5 5 N 1.46447 * 113.70928 * 146.73825 * 4 2 1 6 6 C 1.46497 * 126.08559 * 178.24435 * 5 4 2 7 7 H 1.08998 * 109.47385 * 185.81576 * 6 5 4 8 8 C 1.50702 * 109.47145 * 305.81673 * 6 5 4 9 9 H 1.08001 * 119.99640 * 59.10740 * 8 6 5 10 10 C 1.37867 * 120.00177 * 239.10065 * 8 6 5 11 11 N 1.31515 * 120.00264 * 172.03337 * 10 8 6 12 12 Si 1.86799 * 120.00099 * 352.03212 * 10 8 6 13 13 H 1.48509 * 109.47119 * 84.90581 * 12 10 8 14 14 H 1.48500 * 109.47325 * 204.90295 * 12 10 8 15 15 H 1.48497 * 109.47411 * 324.90904 * 12 10 8 16 16 C 1.50698 * 109.47041 * 65.81590 * 6 5 4 17 17 C 1.38238 * 120.00010 * 122.89172 * 16 6 5 18 18 C 1.38234 * 120.00399 * 179.78634 * 17 16 6 19 19 C 1.38234 * 119.99402 * 0.45141 * 18 17 16 20 20 C 1.38238 * 120.00448 * 359.80294 * 19 18 17 21 21 C 1.38230 * 120.00202 * 303.17049 * 16 6 5 22 22 S 1.67289 * 107.82826 * 358.51154 * 5 4 2 23 23 O 1.42105 * 105.40618 * 94.73223 * 22 5 4 24 24 O 1.42100 * 105.40725 * 224.98762 * 22 5 4 25 25 C 1.55560 * 110.09826 * 238.37270 * 2 1 3 26 26 H 1.08999 * 109.47165 * 298.43242 * 1 2 3 27 27 H 1.08995 * 109.47228 * 58.43552 * 1 2 3 28 28 H 1.09005 * 109.47347 * 178.43795 * 1 2 3 29 29 H 1.09007 * 108.64359 * 25.62850 * 4 2 1 30 30 H 1.09002 * 108.64277 * 267.85640 * 4 2 1 31 31 H 0.97000 * 120.00496 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.99457 * 0.02562 * 17 16 6 33 33 H 1.07995 * 120.00305 * 180.27333 * 18 17 16 34 34 H 1.08007 * 119.99546 * 179.83281 * 19 18 17 35 35 H 1.08000 * 119.99768 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.00071 * 359.97438 * 21 16 6 37 37 H 1.09001 * 111.37394 * 321.42057 * 25 2 1 38 38 H 1.09004 * 111.37068 * 86.21403 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9042 1.0236 0.0000 4 6 2.0565 -0.7531 1.2258 5 7 3.3118 -1.4675 0.9836 6 6 4.0689 -2.2408 1.9710 7 1 5.0096 -2.5709 1.5303 8 6 4.3530 -1.3785 3.1739 9 1 3.5365 -0.9466 3.7335 10 6 5.6550 -1.1412 3.5600 11 7 5.9107 -0.2671 4.5088 12 14 7.0562 -2.0612 2.7355 13 1 7.4455 -1.3556 1.4881 14 1 8.2202 -2.1183 3.6558 15 1 6.6167 -3.4411 2.4069 16 6 3.2631 -3.4422 2.3932 17 6 3.7880 -4.7127 2.2469 18 6 3.0507 -5.8145 2.6382 19 6 1.7846 -5.6464 3.1672 20 6 1.2576 -4.3763 3.3086 21 6 1.9968 -3.2742 2.9213 22 16 3.7312 -1.2371 -0.6194 23 8 4.6215 -0.1295 -0.6213 24 8 4.1214 -2.5179 -1.0954 25 6 2.0645 -0.7661 -1.2439 26 1 -0.3633 0.4893 0.9037 27 1 -0.3633 0.5379 -0.8756 28 1 -0.3634 -1.0273 -0.0280 29 1 1.3018 -1.4727 1.5435 30 1 2.2126 -0.0381 2.0336 31 1 6.8268 -0.0998 4.7802 32 1 4.7758 -4.8441 1.8305 33 1 3.4625 -6.8067 2.5281 34 1 1.2074 -6.5075 3.4705 35 1 0.2686 -4.2450 3.7223 36 1 1.5850 -2.2820 3.0318 37 1 1.4558 -1.6437 -1.4618 38 1 2.1381 -0.1113 -2.1123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250411860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:38 Heat of formation + Delta-G solvation = -35.144328 kcal Electronic energy + Delta-G solvation = -22768.392745 eV Core-core repulsion = 19510.176537 eV Total energy + Delta-G solvation = -3258.216208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.83655 -37.24698 -36.38368 -35.28247 -34.46852 -32.30810 -30.55401 -30.19063 -27.81534 -27.32808 -25.15217 -22.72558 -22.08037 -20.55697 -20.30015 -18.31863 -17.31157 -16.55772 -16.20092 -16.02744 -15.47197 -14.85222 -14.65780 -14.49553 -14.17084 -13.53667 -13.25045 -12.96135 -12.88645 -12.79272 -12.61612 -12.25622 -12.09754 -11.83561 -11.58756 -11.50438 -11.38978 -11.20024 -11.02749 -10.98662 -10.72429 -10.45086 -10.22569 -10.06082 -9.93717 -9.52915 -8.81619 -8.27979 -8.06530 -7.84004 -6.37624 -4.34262 0.72508 2.03645 2.05628 3.11485 3.25311 3.27337 3.31036 4.07456 4.21493 4.23540 4.49826 4.54541 4.86019 5.05857 5.12034 5.28517 5.44439 5.47321 5.48455 5.60729 5.63612 5.67377 5.76215 5.89975 5.99803 6.03315 6.14099 6.22023 6.30738 6.42217 6.59683 6.68125 6.81286 7.07698 7.09558 7.29746 7.49148 7.63474 7.67695 8.23908 8.68481 9.23135 10.72531 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.009448 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.624058 B = 2962.883136 C = 4090.406481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 H 0.098 0.902 4 C 0.081 3.919 5 N -0.956 5.956 6 C 0.304 3.696 7 H 0.058 0.942 8 C -0.494 4.494 9 H 0.087 0.913 10 C 0.086 3.914 11 N -0.866 5.866 12 Si 0.854 3.146 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.257 1.257 16 C -0.044 4.044 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.106 4.106 22 S 2.530 3.470 23 O -0.956 6.956 24 O -0.974 6.974 25 C -0.597 4.597 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.272 0.728 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.875 -3.296 -7.105 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.116 0.884 4 C -0.046 4.046 5 N -0.799 5.799 6 C 0.204 3.796 7 H 0.076 0.924 8 C -0.535 4.535 9 H 0.105 0.895 10 C -0.122 4.122 11 N -0.501 5.501 12 Si 0.679 3.321 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.182 1.182 16 C -0.047 4.047 17 C -0.145 4.145 18 C -0.140 4.140 19 C -0.163 4.163 20 C -0.146 4.146 21 C -0.125 4.125 22 S 2.629 3.371 23 O -0.945 6.945 24 O -0.963 6.963 25 C -0.726 4.726 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.731 -3.348 -7.456 12.708 hybrid contribution 0.176 -0.250 -0.203 0.367 sum -9.555 -3.598 -7.659 12.764 Atomic orbital electron populations 1.21682 0.92489 1.02521 1.02292 1.21961 0.98673 1.00081 0.90783 0.88369 1.21607 0.87829 0.97181 0.97999 1.58271 1.32598 1.64004 1.25015 1.17708 0.87949 0.86093 0.87866 0.92448 1.21089 0.93990 1.28960 1.09480 0.89519 1.25064 0.98704 0.93864 0.94599 1.69871 1.21094 1.30518 1.28607 0.87187 0.82539 0.81716 0.80644 1.18887 1.20274 1.18175 1.20640 0.94254 0.94902 0.94905 1.21082 0.99996 0.92372 1.01002 1.20963 0.94983 0.98045 1.00053 1.20891 0.96174 0.96795 1.02454 1.21040 0.99550 0.92985 1.01018 1.21055 0.94443 0.98412 0.98550 1.07827 0.77460 0.75198 0.76603 1.93623 1.60277 1.54773 1.85813 1.93530 1.81835 1.40078 1.80868 1.30932 1.24734 1.10474 1.06433 0.91611 0.92106 0.92004 0.91220 0.89681 0.91822 0.86786 0.87055 0.87267 0.87098 0.85899 0.84752 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.04 37.15 0.34 -0.92 16 2 C -0.09 -1.20 3.29 -89.16 -0.29 -1.49 16 3 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.08 1.30 5.07 -3.97 -0.02 1.28 16 5 N -0.96 -19.42 3.12 -109.69 -0.34 -19.76 16 6 C 0.30 7.06 2.60 -70.24 -0.18 6.88 16 7 H 0.06 1.42 4.52 -51.93 -0.23 1.19 16 8 C -0.49 -12.89 8.28 -34.44 -0.29 -13.18 16 9 H 0.09 2.36 7.88 -52.49 -0.41 1.95 16 10 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 11 N -0.87 -24.88 13.96 55.43 0.77 -24.11 16 12 Si 0.85 21.09 26.92 -169.99 -4.58 16.51 16 13 H -0.26 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.26 -6.01 6.78 56.52 0.38 -5.62 16 16 C -0.04 -0.93 4.96 -104.63 -0.52 -1.45 16 17 C -0.13 -2.51 9.67 -39.58 -0.38 -2.89 16 18 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 19 C -0.14 -2.27 10.05 -39.58 -0.40 -2.67 16 20 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 21 C -0.11 -1.97 8.18 -39.58 -0.32 -2.29 16 22 S 2.53 48.54 6.17 -107.50 -0.66 47.87 16 23 O -0.96 -21.67 18.14 -57.37 -1.04 -22.71 16 24 O -0.97 -21.08 18.04 -57.37 -1.03 -22.11 16 25 C -0.60 -7.56 7.06 38.52 0.27 -7.29 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 1.01 5.21 -51.92 -0.27 0.74 16 30 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.11 2.27 7.89 -52.49 -0.41 1.85 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 2.15 5.73 -52.49 -0.30 1.85 16 37 H 0.13 1.48 8.08 -51.93 -0.42 1.06 16 38 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -32.71 321.30 -9.72 -42.43 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.99 Total: 3.73 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.69 Total: -26.69 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.43 Total: -43.87 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -2.08 Total: -44.82 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.58 Total: 16.51 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.66 Total: 47.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.71 -9.72 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.283 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds