Wall clock time and date at job start Tue Mar 31 2020 07:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 110.08557 * 2 1 4 4 C 1.53203 * 110.10419 * 121.56697 * 2 1 3 5 5 N 1.46447 * 113.70928 * 146.73825 * 4 2 1 6 6 C 1.46497 * 126.08559 * 178.24435 * 5 4 2 7 7 H 1.08998 * 109.47385 * 185.81576 * 6 5 4 8 8 C 1.50702 * 109.47145 * 305.81673 * 6 5 4 9 9 H 1.08001 * 119.99640 * 59.10740 * 8 6 5 10 10 C 1.37867 * 120.00177 * 239.10065 * 8 6 5 11 11 N 1.31515 * 120.00264 * 172.03337 * 10 8 6 12 12 Si 1.86799 * 120.00099 * 352.03212 * 10 8 6 13 13 H 1.48509 * 109.47119 * 84.90581 * 12 10 8 14 14 H 1.48500 * 109.47325 * 204.90295 * 12 10 8 15 15 H 1.48497 * 109.47411 * 324.90904 * 12 10 8 16 16 C 1.50698 * 109.47041 * 65.81590 * 6 5 4 17 17 C 1.38238 * 120.00010 * 122.89172 * 16 6 5 18 18 C 1.38234 * 120.00399 * 179.78634 * 17 16 6 19 19 C 1.38234 * 119.99402 * 0.45141 * 18 17 16 20 20 C 1.38238 * 120.00448 * 359.80294 * 19 18 17 21 21 C 1.38230 * 120.00202 * 303.17049 * 16 6 5 22 22 S 1.67289 * 107.82826 * 358.51154 * 5 4 2 23 23 O 1.42105 * 105.40618 * 94.73223 * 22 5 4 24 24 O 1.42100 * 105.40725 * 224.98762 * 22 5 4 25 25 C 1.55560 * 110.09826 * 238.37270 * 2 1 3 26 26 H 1.08999 * 109.47165 * 298.43242 * 1 2 3 27 27 H 1.08995 * 109.47228 * 58.43552 * 1 2 3 28 28 H 1.09005 * 109.47347 * 178.43795 * 1 2 3 29 29 H 1.09007 * 108.64359 * 25.62850 * 4 2 1 30 30 H 1.09002 * 108.64277 * 267.85640 * 4 2 1 31 31 H 0.97000 * 120.00496 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.99457 * 0.02562 * 17 16 6 33 33 H 1.07995 * 120.00305 * 180.27333 * 18 17 16 34 34 H 1.08007 * 119.99546 * 179.83281 * 19 18 17 35 35 H 1.08000 * 119.99768 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.00071 * 359.97438 * 21 16 6 37 37 H 1.09001 * 111.37394 * 321.42057 * 25 2 1 38 38 H 1.09004 * 111.37068 * 86.21403 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9042 1.0236 0.0000 4 6 2.0565 -0.7531 1.2258 5 7 3.3118 -1.4675 0.9836 6 6 4.0689 -2.2408 1.9710 7 1 5.0096 -2.5709 1.5303 8 6 4.3530 -1.3785 3.1739 9 1 3.5365 -0.9466 3.7335 10 6 5.6550 -1.1412 3.5600 11 7 5.9107 -0.2671 4.5088 12 14 7.0562 -2.0612 2.7355 13 1 7.4455 -1.3556 1.4881 14 1 8.2202 -2.1183 3.6558 15 1 6.6167 -3.4411 2.4069 16 6 3.2631 -3.4422 2.3932 17 6 3.7880 -4.7127 2.2469 18 6 3.0507 -5.8145 2.6382 19 6 1.7846 -5.6464 3.1672 20 6 1.2576 -4.3763 3.3086 21 6 1.9968 -3.2742 2.9213 22 16 3.7312 -1.2371 -0.6194 23 8 4.6215 -0.1295 -0.6213 24 8 4.1214 -2.5179 -1.0954 25 6 2.0645 -0.7661 -1.2439 26 1 -0.3633 0.4893 0.9037 27 1 -0.3633 0.5379 -0.8756 28 1 -0.3634 -1.0273 -0.0280 29 1 1.3018 -1.4727 1.5435 30 1 2.2126 -0.0381 2.0336 31 1 6.8268 -0.0998 4.7802 32 1 4.7758 -4.8441 1.8305 33 1 3.4625 -6.8067 2.5281 34 1 1.2074 -6.5075 3.4705 35 1 0.2686 -4.2450 3.7223 36 1 1.5850 -2.2820 3.0318 37 1 1.4558 -1.6437 -1.4618 38 1 2.1381 -0.1113 -2.1123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250411860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:37 Heat of formation + Delta-G solvation = -58.981719 kcal Electronic energy + Delta-G solvation = -22769.426412 eV Core-core repulsion = 19510.176537 eV Total energy + Delta-G solvation = -3259.249875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27355 -38.55280 -37.97273 -36.90498 -36.01151 -34.18731 -31.94648 -31.56603 -29.19698 -28.62999 -26.62388 -24.32120 -23.44140 -21.86893 -21.66652 -19.88233 -19.19326 -18.10008 -17.59516 -17.53848 -16.99643 -16.41271 -16.19798 -15.85528 -15.64423 -14.97332 -14.79088 -14.59060 -14.20968 -13.99631 -13.87618 -13.69075 -13.50205 -13.19460 -13.12175 -13.03395 -12.93518 -12.86752 -12.62156 -12.23409 -12.05280 -11.92662 -11.81987 -11.54267 -11.43560 -11.27533 -10.89003 -9.65859 -9.53544 -9.37867 -8.46489 -6.45062 -0.71029 0.63805 0.67516 1.16832 1.22363 1.25886 1.67643 2.17268 2.68944 2.88379 3.09325 3.14184 3.35057 3.64078 3.97118 3.98389 4.20401 4.23703 4.33168 4.38866 4.41106 4.52286 4.61106 4.73470 4.83583 4.87127 4.94367 5.13072 5.20381 5.24326 5.26888 5.33413 5.43050 5.43933 5.73191 5.74806 5.91973 6.02725 6.23574 6.32086 6.58360 7.17036 8.68277 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.009448 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.624058 B = 2962.883136 C = 4090.406481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 H 0.103 0.897 4 C 0.073 3.927 5 N -0.972 5.972 6 C 0.310 3.690 7 H 0.031 0.969 8 C -0.493 4.493 9 H 0.064 0.936 10 C 0.037 3.963 11 N -0.917 5.917 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.264 1.264 15 H -0.244 1.244 16 C -0.074 4.074 17 C -0.154 4.154 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.117 4.117 22 S 2.503 3.497 23 O -1.008 7.008 24 O -1.008 7.008 25 C -0.536 4.536 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.270 0.730 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.169 0.831 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.119 -4.868 -8.731 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 H 0.121 0.879 4 C -0.053 4.053 5 N -0.814 5.814 6 C 0.208 3.792 7 H 0.049 0.951 8 C -0.534 4.534 9 H 0.082 0.918 10 C -0.165 4.165 11 N -0.555 5.555 12 Si 0.712 3.288 13 H -0.208 1.208 14 H -0.189 1.189 15 H -0.168 1.168 16 C -0.076 4.076 17 C -0.173 4.173 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.135 4.135 22 S 2.609 3.391 23 O -0.997 6.997 24 O -0.998 6.998 25 C -0.671 4.671 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.143 0.857 37 H 0.187 0.813 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.911 -4.951 -9.025 17.306 hybrid contribution 1.201 0.200 0.127 1.225 sum -12.710 -4.752 -8.898 16.227 Atomic orbital electron populations 1.21724 0.88939 1.03884 1.04009 1.22117 1.01247 0.99510 0.88454 0.87918 1.21910 0.86557 0.97139 0.99669 1.57590 1.33730 1.64217 1.25816 1.17379 0.88213 0.86816 0.86838 0.95075 1.21206 0.92939 1.28779 1.10428 0.91796 1.25609 1.00651 0.94861 0.95416 1.69953 1.21211 1.33198 1.31149 0.86640 0.81311 0.81536 0.79281 1.20822 1.18900 1.16752 1.20493 0.95661 0.94225 0.97245 1.21183 1.00142 0.93325 1.02627 1.21300 0.95403 0.98229 0.99057 1.21394 0.95529 0.98045 1.00185 1.21458 1.00673 0.92262 0.99459 1.21163 0.93818 0.99709 0.98787 1.08096 0.80447 0.74217 0.76364 1.93566 1.64429 1.55447 1.86266 1.93486 1.84012 1.41454 1.80822 1.30676 1.16313 1.12517 1.07607 0.90873 0.89532 0.90870 0.89264 0.91969 0.92008 0.88346 0.84261 0.83126 0.83376 0.85723 0.81292 0.81084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.04 71.98 0.65 -1.07 16 2 C -0.09 -2.00 3.29 -9.85 -0.03 -2.03 16 3 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.07 2.29 5.07 86.46 0.44 2.73 16 5 N -0.97 -40.30 3.12 -500.96 -1.56 -41.86 16 6 C 0.31 15.08 2.60 43.50 0.11 15.19 16 7 H 0.03 1.65 4.52 -2.39 -0.01 1.64 16 8 C -0.49 -27.40 8.28 25.60 0.21 -27.18 16 9 H 0.06 3.73 7.88 -2.91 -0.02 3.71 16 10 C 0.04 2.15 5.47 84.65 0.46 2.61 16 11 N -0.92 -56.22 13.96 21.44 0.30 -55.92 16 12 Si 0.89 46.02 26.92 68.60 1.85 47.87 16 13 H -0.28 -15.24 7.11 99.48 0.71 -14.53 16 14 H -0.26 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.24 -11.89 6.78 99.48 0.67 -11.21 16 16 C -0.07 -3.14 4.96 -19.87 -0.10 -3.24 16 17 C -0.15 -6.17 9.67 22.27 0.22 -5.96 16 18 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 19 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 20 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 21 C -0.12 -4.17 8.18 22.27 0.18 -3.99 16 22 S 2.50 96.17 6.17 -56.49 -0.35 95.82 16 23 O -1.01 -47.43 18.14 -127.81 -2.32 -49.75 16 24 O -1.01 -44.42 18.04 -127.81 -2.31 -46.72 16 25 C -0.54 -11.06 7.06 72.86 0.51 -10.55 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.88 8.12 -2.38 -0.02 0.86 16 29 H 0.09 2.42 5.21 -2.38 -0.01 2.41 16 30 H 0.06 2.21 7.71 -2.39 -0.02 2.19 16 31 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.10 4.10 7.89 -2.91 -0.02 4.08 16 33 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.12 4.28 5.73 -2.91 -0.02 4.26 16 37 H 0.17 2.60 8.08 -2.39 -0.02 2.58 16 38 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -79.93 321.30 -0.03 -79.96 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.03 Total: 14.28 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.33 Total: -43.68 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -1.26 Total: -97.78 kcal Atomic # 8 Polarization: -91.85 SS G_CDS: -4.62 Total: -96.47 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.85 Total: 47.87 kcal Atomic # 16 Polarization: 96.17 SS G_CDS: -0.35 Total: 95.82 kcal Total: -79.93 -0.03 -79.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.980 kcal (2) G-P(sol) polarization free energy of solvation -79.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds