Wall clock time and date at job start Tue Mar 31 2020 07:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.07867 * 2 1 4 4 C 1.53185 * 110.21719 * 238.55114 * 2 1 3 5 5 N 1.46444 * 113.71670 * 213.52004 * 4 2 1 6 6 C 1.46494 * 126.08748 * 181.59130 * 5 4 2 7 7 H 1.08997 * 109.47655 * 136.06402 * 6 5 4 8 8 C 1.50704 * 109.47072 * 16.06387 * 6 5 4 9 9 H 1.07998 * 120.00333 * 275.13189 * 8 6 5 10 10 C 1.37880 * 119.99932 * 95.13121 * 8 6 5 11 11 N 1.31514 * 119.99703 * 354.79083 * 10 8 6 12 12 Si 1.86800 * 120.00100 * 174.79792 * 10 8 6 13 13 H 1.48497 * 109.47254 * 59.99635 * 12 10 8 14 14 H 1.48493 * 109.47110 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46943 * 299.99845 * 12 10 8 16 16 C 1.50697 * 109.47457 * 256.06787 * 6 5 4 17 17 C 1.38236 * 119.99889 * 38.55103 * 16 6 5 18 18 C 1.38237 * 119.99857 * 180.21826 * 17 16 6 19 19 C 1.38240 * 120.00166 * 359.53453 * 18 17 16 20 20 C 1.38226 * 119.99749 * 0.27384 * 19 18 17 21 21 C 1.38237 * 120.00323 * 359.96109 * 20 19 18 22 22 S 1.67295 * 107.83099 * 1.32968 * 5 4 2 23 23 O 1.42092 * 105.40899 * 135.00349 * 22 5 4 24 24 O 1.42100 * 105.40299 * 265.27055 * 22 5 4 25 25 C 1.55558 * 110.10090 * 121.56186 * 2 1 3 26 26 H 1.08998 * 109.46979 * 299.89177 * 1 2 3 27 27 H 1.08996 * 109.47454 * 59.89192 * 1 2 3 28 28 H 1.08999 * 109.47128 * 179.89615 * 1 2 3 29 29 H 1.09000 * 108.76725 * 92.31405 * 4 2 1 30 30 H 1.09002 * 108.51639 * 334.54829 * 4 2 1 31 31 H 0.96998 * 119.99804 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.00205 * 0.02562 * 17 16 6 33 33 H 1.08004 * 120.00155 * 179.81060 * 18 17 16 34 34 H 1.07994 * 119.99998 * 180.25771 * 19 18 17 35 35 H 1.08002 * 120.00161 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.00460 * 180.02562 * 21 20 19 37 37 H 1.08997 * 111.37344 * 38.57537 * 25 2 1 38 38 H 1.09004 * 111.40894 * 273.80602 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0237 0.0000 4 6 2.0594 -0.7500 -1.2263 5 7 3.3119 -1.4685 -0.9820 6 6 4.0689 -2.2429 -1.9685 7 1 5.1305 -2.0150 -1.8725 8 6 3.6014 -1.8835 -3.3554 9 1 2.7396 -2.3770 -3.7796 10 6 4.2741 -0.9246 -4.0827 11 7 5.2593 -0.2511 -3.5301 12 14 3.7861 -0.5820 -5.8530 13 1 2.3695 -0.1390 -5.8991 14 1 4.6563 0.4853 -6.4086 15 1 3.9442 -1.8196 -6.6584 16 6 3.8475 -3.7142 -1.7294 17 6 2.5974 -4.1739 -1.3593 18 6 2.3954 -5.5230 -1.1356 19 6 3.4411 -6.4137 -1.2914 20 6 4.6901 -5.9545 -1.6653 21 6 4.8934 -4.6048 -1.8843 22 16 3.7281 -1.2415 0.6224 23 8 4.1130 -2.5241 1.0976 24 8 4.6217 -0.1367 0.6278 25 6 2.0646 -0.7646 1.2447 26 1 -0.3633 0.5121 0.8909 27 1 -0.3634 0.5155 -0.8890 28 1 -0.3633 -1.0276 -0.0019 29 1 2.2197 -0.0344 -2.0328 30 1 1.3032 -1.4667 -1.5468 31 1 5.7323 0.4238 -4.0416 32 1 1.7793 -3.4786 -1.2419 33 1 1.4195 -5.8818 -0.8435 34 1 3.2822 -7.4681 -1.1207 35 1 5.5072 -6.6503 -1.7867 36 1 5.8691 -4.2461 -2.1769 37 1 1.4560 -1.6419 1.4637 38 1 2.1381 -0.1095 2.1129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250411861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:40 Heat of formation + Delta-G solvation = -39.759504 kcal Electronic energy + Delta-G solvation = -22815.424825 eV Core-core repulsion = 19557.008488 eV Total energy + Delta-G solvation = -3258.416337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.55375 -37.08233 -36.12805 -35.02218 -34.32908 -32.12402 -30.35920 -29.99021 -27.60547 -26.76606 -25.13331 -22.79674 -21.75607 -20.37145 -20.29092 -18.07364 -16.76400 -16.57467 -15.92958 -15.72731 -15.18993 -14.79244 -14.53534 -14.25459 -14.09358 -13.43000 -13.13393 -12.79700 -12.69006 -12.56423 -12.43153 -12.06751 -11.85734 -11.70681 -11.36526 -11.24564 -11.13068 -11.08735 -10.99977 -10.79393 -10.58101 -10.45198 -10.14595 -9.91067 -9.85038 -9.39987 -8.81775 -8.12197 -7.83956 -7.61328 -6.31121 -4.39893 0.97994 2.21123 2.23886 3.16146 3.24176 3.25682 3.47595 4.18166 4.29347 4.47852 4.67655 4.71223 5.05797 5.09973 5.30582 5.46136 5.59614 5.60078 5.65391 5.73879 5.77934 5.83995 5.93374 6.04567 6.15529 6.29937 6.35950 6.49672 6.53839 6.75383 6.82831 6.94960 7.21253 7.22687 7.29901 7.53738 7.66338 7.85670 8.05153 8.11301 8.69969 9.23210 10.72602 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.009578 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.599070 B = 2922.716311 C = 4312.787537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.093 0.907 4 C 0.099 3.901 5 N -0.946 5.946 6 C 0.323 3.677 7 H 0.074 0.926 8 C -0.494 4.494 9 H 0.066 0.934 10 C 0.073 3.927 11 N -0.853 5.853 12 Si 0.901 3.099 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.046 4.046 17 C -0.108 4.108 18 C -0.128 4.128 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.117 4.117 22 S 2.528 3.472 23 O -0.970 6.970 24 O -0.963 6.963 25 C -0.605 4.605 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.271 0.729 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 -2.433 5.157 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.112 0.888 4 C -0.028 4.028 5 N -0.789 5.789 6 C 0.224 3.776 7 H 0.092 0.908 8 C -0.536 4.536 9 H 0.085 0.915 10 C -0.136 4.136 11 N -0.487 5.487 12 Si 0.727 3.273 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.048 4.048 17 C -0.127 4.127 18 C -0.146 4.146 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.135 4.135 22 S 2.626 3.374 23 O -0.959 6.959 24 O -0.952 6.952 25 C -0.733 4.733 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.951 -2.429 5.623 9.265 hybrid contribution -0.947 0.430 -0.928 1.394 sum -7.898 -2.000 4.695 9.403 Atomic orbital electron populations 1.21666 0.92813 1.02376 1.01989 1.21964 0.98396 1.00055 0.91240 0.88843 1.21216 0.87796 0.96955 0.96823 1.58437 1.32432 1.63705 1.24361 1.17583 0.92759 0.80743 0.86522 0.90790 1.21030 1.14450 1.21244 0.96910 0.91532 1.25186 0.94599 0.94969 0.98798 1.69979 1.20259 1.21580 1.36921 0.86513 0.78712 0.78236 0.83818 1.19821 1.21009 1.19733 1.20890 0.92698 0.98310 0.92941 1.20880 0.97223 0.94589 0.99985 1.20979 0.98144 0.93913 1.01571 1.20833 0.93753 0.98528 1.03419 1.20943 0.96733 0.95524 1.00968 1.20950 0.99038 0.92933 1.00609 1.07920 0.77090 0.75115 0.77238 1.93538 1.81661 1.39522 1.81198 1.93595 1.60228 1.55281 1.86095 1.30975 1.25712 1.10275 1.06330 0.92358 0.91787 0.92106 0.90015 0.92204 0.91881 0.86873 0.87494 0.87524 0.87236 0.86608 0.85075 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.06 37.16 0.34 -1.09 16 2 C -0.10 -1.36 3.29 -89.16 -0.29 -1.65 16 3 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.10 1.76 5.23 -3.98 -0.02 1.74 16 5 N -0.95 -20.12 2.60 -109.71 -0.28 -20.41 16 6 C 0.32 7.70 2.85 -70.24 -0.20 7.50 16 7 H 0.07 2.00 7.26 -51.93 -0.38 1.62 16 8 C -0.49 -12.12 7.19 -34.44 -0.25 -12.37 16 9 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 10 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 11 N -0.85 -22.91 12.84 55.43 0.71 -22.20 16 12 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 C -0.05 -1.02 4.30 -104.62 -0.45 -1.47 16 17 C -0.11 -2.15 9.32 -39.58 -0.37 -2.52 16 18 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 19 C -0.15 -2.51 10.05 -39.59 -0.40 -2.91 16 20 C -0.12 -2.24 10.05 -39.59 -0.40 -2.64 16 21 C -0.12 -2.44 9.67 -39.58 -0.38 -2.82 16 22 S 2.53 50.97 6.19 -107.50 -0.66 50.31 16 23 O -0.97 -21.82 17.42 -57.37 -1.00 -22.82 16 24 O -0.96 -22.96 18.14 -57.37 -1.04 -24.00 16 25 C -0.60 -8.50 7.05 38.52 0.27 -8.22 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.08 1.60 7.76 -51.93 -0.40 1.20 16 30 H 0.06 0.98 6.69 -51.93 -0.35 0.63 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.11 2.08 6.44 -52.48 -0.34 1.74 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.12 2.35 8.05 -52.49 -0.42 1.93 16 37 H 0.13 1.61 8.08 -51.93 -0.42 1.19 16 38 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -31.47 326.85 -10.25 -41.72 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.23 Total: 5.40 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.65 Total: -27.35 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.43 Total: -42.61 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.04 Total: -46.82 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 50.97 SS G_CDS: -0.66 Total: 50.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.47 -10.25 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.960 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds