Wall clock time and date at job start Tue Mar 31 2020 07:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.07867 * 2 1 4 4 C 1.53185 * 110.21719 * 238.55114 * 2 1 3 5 5 N 1.46444 * 113.71670 * 213.52004 * 4 2 1 6 6 C 1.46494 * 126.08748 * 181.59130 * 5 4 2 7 7 H 1.08997 * 109.47655 * 136.06402 * 6 5 4 8 8 C 1.50704 * 109.47072 * 16.06387 * 6 5 4 9 9 H 1.07998 * 120.00333 * 275.13189 * 8 6 5 10 10 C 1.37880 * 119.99932 * 95.13121 * 8 6 5 11 11 N 1.31514 * 119.99703 * 354.79083 * 10 8 6 12 12 Si 1.86800 * 120.00100 * 174.79792 * 10 8 6 13 13 H 1.48497 * 109.47254 * 59.99635 * 12 10 8 14 14 H 1.48493 * 109.47110 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46943 * 299.99845 * 12 10 8 16 16 C 1.50697 * 109.47457 * 256.06787 * 6 5 4 17 17 C 1.38236 * 119.99889 * 38.55103 * 16 6 5 18 18 C 1.38237 * 119.99857 * 180.21826 * 17 16 6 19 19 C 1.38240 * 120.00166 * 359.53453 * 18 17 16 20 20 C 1.38226 * 119.99749 * 0.27384 * 19 18 17 21 21 C 1.38237 * 120.00323 * 359.96109 * 20 19 18 22 22 S 1.67295 * 107.83099 * 1.32968 * 5 4 2 23 23 O 1.42092 * 105.40899 * 135.00349 * 22 5 4 24 24 O 1.42100 * 105.40299 * 265.27055 * 22 5 4 25 25 C 1.55558 * 110.10090 * 121.56186 * 2 1 3 26 26 H 1.08998 * 109.46979 * 299.89177 * 1 2 3 27 27 H 1.08996 * 109.47454 * 59.89192 * 1 2 3 28 28 H 1.08999 * 109.47128 * 179.89615 * 1 2 3 29 29 H 1.09000 * 108.76725 * 92.31405 * 4 2 1 30 30 H 1.09002 * 108.51639 * 334.54829 * 4 2 1 31 31 H 0.96998 * 119.99804 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.00205 * 0.02562 * 17 16 6 33 33 H 1.08004 * 120.00155 * 179.81060 * 18 17 16 34 34 H 1.07994 * 119.99998 * 180.25771 * 19 18 17 35 35 H 1.08002 * 120.00161 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.00460 * 180.02562 * 21 20 19 37 37 H 1.08997 * 111.37344 * 38.57537 * 25 2 1 38 38 H 1.09004 * 111.40894 * 273.80602 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0237 0.0000 4 6 2.0594 -0.7500 -1.2263 5 7 3.3119 -1.4685 -0.9820 6 6 4.0689 -2.2429 -1.9685 7 1 5.1305 -2.0150 -1.8725 8 6 3.6014 -1.8835 -3.3554 9 1 2.7396 -2.3770 -3.7796 10 6 4.2741 -0.9246 -4.0827 11 7 5.2593 -0.2511 -3.5301 12 14 3.7861 -0.5820 -5.8530 13 1 2.3695 -0.1390 -5.8991 14 1 4.6563 0.4853 -6.4086 15 1 3.9442 -1.8196 -6.6584 16 6 3.8475 -3.7142 -1.7294 17 6 2.5974 -4.1739 -1.3593 18 6 2.3954 -5.5230 -1.1356 19 6 3.4411 -6.4137 -1.2914 20 6 4.6901 -5.9545 -1.6653 21 6 4.8934 -4.6048 -1.8843 22 16 3.7281 -1.2415 0.6224 23 8 4.1130 -2.5241 1.0976 24 8 4.6217 -0.1367 0.6278 25 6 2.0646 -0.7646 1.2447 26 1 -0.3633 0.5121 0.8909 27 1 -0.3634 0.5155 -0.8890 28 1 -0.3633 -1.0276 -0.0019 29 1 2.2197 -0.0344 -2.0328 30 1 1.3032 -1.4667 -1.5468 31 1 5.7323 0.4238 -4.0416 32 1 1.7793 -3.4786 -1.2419 33 1 1.4195 -5.8818 -0.8435 34 1 3.2822 -7.4681 -1.1207 35 1 5.5072 -6.6503 -1.7867 36 1 5.8691 -4.2461 -2.1769 37 1 1.4560 -1.6419 1.4637 38 1 2.1381 -0.1095 2.1129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250411861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:40 Heat of formation + Delta-G solvation = -61.078094 kcal Electronic energy + Delta-G solvation = -22816.349269 eV Core-core repulsion = 19557.008488 eV Total energy + Delta-G solvation = -3259.340781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06649 -38.48072 -37.81174 -36.72613 -35.91672 -33.89106 -31.82609 -31.44985 -28.81899 -28.38856 -26.67291 -24.38912 -23.23089 -21.87201 -21.62078 -19.71655 -18.56136 -18.10450 -17.38574 -17.36679 -16.77517 -16.48974 -15.93969 -15.74081 -15.65110 -15.00242 -14.53042 -14.21690 -14.01128 -13.90696 -13.78060 -13.56650 -13.34426 -13.01339 -12.94686 -12.87626 -12.85839 -12.76076 -12.52684 -12.21788 -12.00410 -11.89629 -11.56550 -11.47735 -11.39374 -11.11474 -10.72886 -9.59822 -9.41757 -9.22865 -8.20775 -6.37749 -0.55094 0.72212 0.75594 1.42489 1.44038 1.52547 1.88045 2.37449 2.84951 3.06711 3.22743 3.23090 3.44306 3.76436 4.04043 4.21884 4.23374 4.31884 4.40394 4.47119 4.51442 4.60195 4.80843 4.82958 4.91859 4.99869 5.10076 5.19987 5.27228 5.34031 5.38160 5.44097 5.55959 5.65506 5.77806 5.80357 5.96474 6.28502 6.37521 6.40278 6.77133 7.31073 8.83676 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.009578 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.599070 B = 2922.716311 C = 4312.787537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 H 0.094 0.906 4 C 0.093 3.907 5 N -0.959 5.959 6 C 0.331 3.669 7 H 0.019 0.981 8 C -0.501 4.501 9 H 0.067 0.933 10 C 0.026 3.974 11 N -0.904 5.904 12 Si 0.962 3.038 13 H -0.260 1.260 14 H -0.288 1.288 15 H -0.270 1.270 16 C -0.074 4.074 17 C -0.120 4.120 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.125 4.125 21 C -0.151 4.151 22 S 2.506 3.494 23 O -1.002 7.002 24 O -1.018 7.018 25 C -0.549 4.549 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.267 0.733 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.167 0.833 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -3.850 6.560 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.114 4.114 3 H 0.112 0.888 4 C -0.033 4.033 5 N -0.801 5.801 6 C 0.230 3.770 7 H 0.037 0.963 8 C -0.543 4.543 9 H 0.085 0.915 10 C -0.177 4.177 11 N -0.541 5.541 12 Si 0.787 3.213 13 H -0.184 1.184 14 H -0.214 1.214 15 H -0.195 1.195 16 C -0.076 4.076 17 C -0.138 4.138 18 C -0.142 4.142 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.170 4.170 22 S 2.611 3.389 23 O -0.992 6.992 24 O -1.007 7.007 25 C -0.683 4.683 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.185 0.815 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.068 -3.871 6.968 13.639 hybrid contribution 0.254 0.797 -1.179 1.446 sum -10.813 -3.074 5.790 12.645 Atomic orbital electron populations 1.21701 0.89152 1.03808 1.03709 1.22080 1.01072 0.99290 0.88947 0.88755 1.21477 0.86739 0.96713 0.98393 1.57850 1.33410 1.63781 1.25090 1.17110 0.90223 0.82646 0.87066 0.96331 1.21163 1.14272 1.20991 0.97839 0.91455 1.25928 0.94493 0.94865 1.02462 1.70143 1.22416 1.23124 1.38415 0.85547 0.78778 0.77784 0.79209 1.18400 1.21404 1.19536 1.20794 0.94431 0.97040 0.95308 1.21056 0.96322 0.96256 1.00177 1.21446 1.00107 0.92782 0.99887 1.21345 0.92705 1.00614 1.01271 1.21279 0.98601 0.94418 0.99983 1.21086 0.98465 0.94783 1.02636 1.08013 0.79799 0.74109 0.76983 1.93492 1.83753 1.40720 1.81186 1.93534 1.64355 1.56167 1.86637 1.30700 1.17909 1.12323 1.07390 0.89685 0.91182 0.90822 0.92917 0.90512 0.92430 0.85812 0.83519 0.83406 0.84520 0.88441 0.81513 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.06 71.98 0.65 -1.42 16 2 C -0.09 -2.34 3.29 -9.85 -0.03 -2.37 16 3 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.09 3.28 5.23 86.45 0.45 3.73 16 5 N -0.96 -42.26 2.60 -501.02 -1.30 -43.56 16 6 C 0.33 16.88 2.85 43.50 0.12 17.00 16 7 H 0.02 1.13 7.26 -2.39 -0.02 1.12 16 8 C -0.50 -26.00 7.19 25.60 0.18 -25.82 16 9 H 0.07 3.37 7.82 -2.91 -0.02 3.35 16 10 C 0.03 1.38 5.45 84.66 0.46 1.84 16 11 N -0.90 -52.59 12.84 21.45 0.28 -52.31 16 12 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 13 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 14 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 C -0.07 -3.37 4.30 -19.87 -0.09 -3.45 16 17 C -0.12 -4.61 9.32 22.27 0.21 -4.41 16 18 C -0.12 -3.96 10.05 22.27 0.22 -3.74 16 19 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 20 C -0.12 -4.41 10.05 22.27 0.22 -4.18 16 21 C -0.15 -6.63 9.67 22.27 0.22 -6.41 16 22 S 2.51 102.69 6.19 -56.49 -0.35 102.34 16 23 O -1.00 -46.13 17.42 -127.81 -2.23 -48.35 16 24 O -1.02 -51.17 18.14 -127.81 -2.32 -53.48 16 25 C -0.55 -13.07 7.05 72.86 0.51 -12.55 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.05 2.14 7.76 -2.39 -0.02 2.12 16 30 H 0.08 2.40 6.69 -2.39 -0.02 2.38 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.12 4.33 6.44 -2.91 -0.02 4.31 16 33 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.10 4.42 8.05 -2.91 -0.02 4.40 16 37 H 0.17 3.03 8.08 -2.39 -0.02 3.01 16 38 H 0.16 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -76.77 326.85 0.52 -76.25 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.05 Total: 21.40 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 3.36 Total: -45.92 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -1.03 Total: -95.87 kcal Atomic # 8 Polarization: -97.29 SS G_CDS: -4.55 Total: -101.84 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 102.69 SS G_CDS: -0.35 Total: 102.34 kcal Total: -76.77 0.52 -76.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.171 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds