Wall clock time and date at job start Tue Mar 31 2020 07:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.07940 * 2 1 4 4 C 1.53198 * 110.10037 * 121.56352 * 2 1 3 5 5 N 1.46447 * 113.70726 * 146.74501 * 4 2 1 6 6 C 1.46496 * 126.08790 * 178.26069 * 5 4 2 7 7 H 1.09007 * 109.47446 * 174.13211 * 6 5 4 8 8 C 1.50700 * 109.46937 * 54.13732 * 6 5 4 9 9 H 1.08008 * 120.00021 * 333.16737 * 8 6 5 10 10 C 1.37874 * 120.00372 * 153.17629 * 8 6 5 11 11 N 1.31520 * 119.99842 * 354.19841 * 10 8 6 12 12 Si 1.86800 * 120.00521 * 174.20224 * 10 8 6 13 13 H 1.48500 * 109.47192 * 89.99571 * 12 10 8 14 14 H 1.48500 * 109.47221 * 209.99834 * 12 10 8 15 15 H 1.48500 * 109.46793 * 329.99767 * 12 10 8 16 16 C 1.50694 * 109.47455 * 294.13412 * 6 5 4 17 17 C 1.38235 * 120.00331 * 237.64418 * 16 6 5 18 18 C 1.38238 * 120.00234 * 179.74184 * 17 16 6 19 19 C 1.38241 * 119.99596 * 0.54664 * 18 17 16 20 20 C 1.38232 * 120.00076 * 359.70923 * 19 18 17 21 21 C 1.38236 * 119.99722 * 57.91092 * 16 6 5 22 22 S 1.67301 * 107.82985 * 358.28285 * 5 4 2 23 23 O 1.42100 * 105.40472 * 225.22328 * 22 5 4 24 24 O 1.42092 * 105.58793 * 95.01148 * 22 5 4 25 25 C 1.55559 * 110.10112 * 238.37568 * 2 1 3 26 26 H 1.08995 * 109.46771 * 298.43553 * 1 2 3 27 27 H 1.08997 * 109.46812 * 58.43550 * 1 2 3 28 28 H 1.08999 * 109.46802 * 178.43214 * 1 2 3 29 29 H 1.09003 * 108.64750 * 267.85486 * 4 2 1 30 30 H 1.09002 * 108.64921 * 25.63408 * 4 2 1 31 31 H 0.96996 * 120.00203 * 180.02562 * 11 10 8 32 32 H 1.07997 * 119.99909 * 359.97438 * 17 16 6 33 33 H 1.07999 * 120.00058 * 180.27479 * 18 17 16 34 34 H 1.08000 * 119.99869 * 179.71926 * 19 18 17 35 35 H 1.08002 * 120.00071 * 179.97438 * 20 19 18 36 36 H 1.07999 * 120.00229 * 0.02562 * 21 16 6 37 37 H 1.09002 * 111.36796 * 321.41929 * 25 2 1 38 38 H 1.08994 * 111.37152 * 86.21352 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9043 1.0238 0.0000 4 6 2.0565 -0.7531 1.2258 5 7 3.3119 -1.4673 0.9837 6 6 4.0688 -2.2409 1.9711 7 1 4.9019 -2.7425 1.4786 8 6 3.1661 -3.2690 2.6029 9 1 2.1017 -3.0935 2.6558 10 6 3.6989 -4.4336 3.1135 11 7 4.9762 -4.7001 2.9484 12 14 2.6067 -5.6331 4.0396 13 1 2.0246 -6.6108 3.0853 14 1 3.4141 -6.3542 5.0562 15 1 1.5132 -4.8879 4.7135 16 6 4.5984 -1.3152 3.0358 17 6 5.9570 -1.2511 3.2826 18 6 6.4432 -0.3980 4.2557 19 6 5.5698 0.3827 4.9896 20 6 4.2107 0.3146 4.7464 21 6 3.7250 -0.5343 3.7694 22 16 3.7281 -1.2421 -0.6209 23 8 4.1131 -2.5253 -1.0947 24 8 4.6231 -0.1385 -0.6320 25 6 2.0647 -0.7660 -1.2439 26 1 -0.3633 0.4893 0.9037 27 1 -0.3633 0.5379 -0.8756 28 1 -0.3633 -1.0273 -0.0281 29 1 2.2126 -0.0380 2.0336 30 1 1.3019 -1.4726 1.5435 31 1 5.3510 -5.5196 3.3073 32 1 6.6389 -1.8647 2.7127 33 1 7.5051 -0.3446 4.4454 34 1 5.9492 1.0458 5.7529 35 1 3.5283 0.9242 5.3201 36 1 2.6631 -0.5878 3.5798 37 1 1.4560 -1.6436 -1.4618 38 1 2.1382 -0.1113 -2.1122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250411862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:43 Heat of formation + Delta-G solvation = -37.455120 kcal Electronic energy + Delta-G solvation = -22657.567108 eV Core-core repulsion = 19399.250696 eV Total energy + Delta-G solvation = -3258.316412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.60910 -37.21341 -36.36268 -35.24918 -34.35660 -32.18928 -30.23307 -29.96933 -27.73304 -26.93675 -25.18617 -22.81181 -21.77661 -20.54991 -20.32067 -18.26890 -16.78275 -16.61066 -16.26928 -15.71209 -15.19125 -14.90692 -14.65828 -14.29417 -13.99036 -13.58820 -13.21818 -13.03696 -12.80677 -12.54339 -12.31630 -12.10851 -11.87040 -11.76828 -11.45946 -11.34606 -11.24405 -11.12410 -11.00921 -10.91281 -10.71022 -10.26554 -10.17216 -10.09288 -9.91263 -9.65024 -8.59599 -8.05859 -7.93261 -7.70815 -6.18629 -4.23131 0.77282 2.27803 2.28925 3.21328 3.25757 3.31358 3.34494 4.08843 4.26867 4.31394 4.50551 4.76547 4.86211 5.12118 5.16137 5.29074 5.44650 5.62266 5.65083 5.67216 5.72329 5.81285 5.83783 6.01040 6.08869 6.16548 6.28291 6.39100 6.47794 6.51390 6.81247 6.93639 7.21358 7.28278 7.35875 7.65805 7.70647 7.83087 7.92788 8.12547 8.79190 9.39837 10.87910 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.008105 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.433825 B = 3453.695128 C = 4334.237477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 H 0.095 0.905 4 C 0.078 3.922 5 N -0.959 5.959 6 C 0.330 3.670 7 H 0.082 0.918 8 C -0.513 4.513 9 H 0.067 0.933 10 C 0.071 3.929 11 N -0.876 5.876 12 Si 0.899 3.101 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.037 4.037 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.148 4.148 20 C -0.135 4.135 21 C -0.109 4.109 22 S 2.551 3.449 23 O -0.956 6.956 24 O -0.967 6.967 25 C -0.598 4.598 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.268 0.732 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 9.424 -2.923 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.113 0.887 4 C -0.049 4.049 5 N -0.801 5.801 6 C 0.229 3.771 7 H 0.099 0.901 8 C -0.553 4.553 9 H 0.085 0.915 10 C -0.135 4.135 11 N -0.512 5.512 12 Si 0.726 3.274 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.040 4.040 17 C -0.129 4.129 18 C -0.145 4.145 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.128 4.128 22 S 2.649 3.351 23 O -0.946 6.946 24 O -0.957 6.957 25 C -0.727 4.727 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.447 9.111 -3.323 11.123 hybrid contribution -1.188 -0.615 0.775 1.546 sum -6.635 8.497 -2.547 11.077 Atomic orbital electron populations 1.21691 0.92431 1.02784 1.02142 1.21956 0.98853 0.99718 0.90961 0.88657 1.21656 0.88949 0.96894 0.97396 1.57453 1.31525 1.64715 1.26398 1.17565 0.91475 0.84921 0.83128 0.90065 1.21124 0.93953 1.01610 1.38594 0.91523 1.24989 0.95273 0.97462 0.95780 1.69889 1.12069 1.25666 1.43543 0.86483 0.80389 0.80884 0.79621 1.20443 1.21029 1.19673 1.20834 0.92479 0.93188 0.97520 1.21073 0.95590 0.97896 0.98302 1.20976 0.98711 0.97629 0.97230 1.20827 0.93772 1.01185 1.00843 1.20975 0.95191 1.00213 0.98914 1.21017 0.99587 0.96359 0.95804 1.06991 0.76883 0.75029 0.76230 1.93588 1.81356 1.39245 1.80408 1.93591 1.60305 1.55641 1.86123 1.30922 1.24863 1.10663 1.06297 0.91758 0.92115 0.91741 0.90587 0.90654 0.92259 0.86537 0.87376 0.87640 0.87535 0.86435 0.84410 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.04 37.16 0.34 -0.92 16 2 C -0.09 -1.15 3.30 -89.15 -0.29 -1.44 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.08 1.23 5.17 -3.97 -0.02 1.21 16 5 N -0.96 -19.42 3.12 -109.70 -0.34 -19.76 16 6 C 0.33 7.97 2.68 -70.24 -0.19 7.78 16 7 H 0.08 2.23 7.10 -51.93 -0.37 1.86 16 8 C -0.51 -13.08 8.03 -34.44 -0.28 -13.35 16 9 H 0.07 1.62 6.82 -52.48 -0.36 1.27 16 10 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 11 N -0.88 -24.29 12.89 55.43 0.71 -23.58 16 12 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C -0.04 -0.85 4.96 -104.63 -0.52 -1.37 16 17 C -0.11 -2.43 9.67 -39.58 -0.38 -2.81 16 18 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 19 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 20 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 21 C -0.11 -2.20 8.14 -39.58 -0.32 -2.52 16 22 S 2.55 48.06 6.16 -107.50 -0.66 47.40 16 23 O -0.96 -21.86 17.97 -57.40 -1.03 -22.90 16 24 O -0.97 -20.36 18.15 -57.40 -1.04 -21.40 16 25 C -0.60 -7.53 7.05 38.52 0.27 -7.25 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.08 1.16 5.43 -51.93 -0.28 0.88 16 30 H 0.08 1.18 6.84 -51.93 -0.36 0.82 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.12 2.62 7.95 -52.49 -0.42 2.20 16 33 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 2.19 5.78 -52.49 -0.30 1.88 16 37 H 0.14 1.58 8.08 -51.93 -0.42 1.16 16 38 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -32.65 323.96 -10.21 -42.86 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.02 Total: 4.55 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -2.69 Total: -27.57 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.37 Total: -43.34 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -2.07 Total: -44.30 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.66 Total: 47.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.65 -10.21 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.402 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds