Wall clock time and date at job start Tue Mar 31 2020 07:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.52224 * 2 1 4 4 C 1.54062 * 110.46525 * 237.43715 * 2 1 3 5 5 N 1.47070 * 110.10797 * 196.09771 * 4 2 1 6 6 C 1.46505 * 126.29887 * 208.99368 * 5 4 2 7 7 H 1.09003 * 109.46851 * 185.91654 * 6 5 4 8 8 C 1.50695 * 109.47180 * 305.91770 * 6 5 4 9 9 H 1.08005 * 120.00274 * 62.85628 * 8 6 5 10 10 C 1.37881 * 120.00113 * 242.85527 * 8 6 5 11 11 N 1.31510 * 119.99925 * 171.23633 * 10 8 6 12 12 Si 1.86794 * 119.99833 * 351.24080 * 10 8 6 13 13 H 1.48507 * 109.47290 * 89.70871 * 12 10 8 14 14 H 1.48504 * 109.47199 * 209.70549 * 12 10 8 15 15 H 1.48501 * 109.47252 * 329.71055 * 12 10 8 16 16 C 1.50695 * 109.47131 * 65.91748 * 6 5 4 17 17 C 1.38238 * 120.00532 * 295.77860 * 16 6 5 18 18 C 1.38228 * 120.00622 * 179.97438 * 17 16 6 19 19 C 1.38238 * 119.99710 * 0.25814 * 18 17 16 20 20 C 1.38239 * 119.99945 * 359.46724 * 19 18 17 21 21 C 1.38234 * 119.99853 * 0.53060 * 20 19 18 22 22 S 1.67000 * 107.39702 * 29.25549 * 5 4 2 23 23 O 1.42105 * 105.13221 * 111.17411 * 22 5 4 24 24 O 1.42101 * 105.13321 * 240.84644 * 22 5 4 25 25 C 1.55609 * 110.46938 * 122.56666 * 2 1 3 26 26 H 1.08996 * 109.47603 * 182.56618 * 1 2 3 27 27 H 1.09010 * 109.47042 * 302.56472 * 1 2 3 28 28 H 1.08999 * 109.47427 * 62.56053 * 1 2 3 29 29 H 1.08999 * 109.35841 * 75.91620 * 4 2 1 30 30 H 1.08997 * 109.35952 * 316.27532 * 4 2 1 31 31 H 0.97000 * 119.99878 * 179.97438 * 11 10 8 32 32 H 1.08002 * 119.99653 * 359.97438 * 17 16 6 33 33 H 1.07995 * 120.00529 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.00134 * 179.71768 * 19 18 17 35 35 H 1.07998 * 120.00017 * 180.29535 * 20 19 18 36 36 H 1.07999 * 119.99764 * 179.76676 * 21 20 19 37 37 H 1.09003 * 111.16145 * 274.48495 * 25 2 1 38 38 H 1.09001 * 111.16647 * 38.70590 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9121 1.0208 0.0000 4 6 2.0686 -0.7769 -1.2165 5 7 3.4885 -1.1049 -1.0186 6 6 4.4941 -1.2752 -2.0704 7 1 5.4296 -1.6163 -1.6269 8 6 4.0097 -2.2956 -3.0679 9 1 3.1157 -2.1060 -3.6436 10 6 4.7077 -3.4713 -3.2457 11 7 4.1981 -4.4334 -3.9835 12 14 6.3770 -3.6976 -2.4386 13 1 6.1980 -4.2910 -1.0890 14 1 7.2105 -4.6024 -3.2705 15 1 7.0495 -2.3795 -2.3144 16 6 4.7195 0.0414 -2.7679 17 6 3.6927 0.6300 -3.4822 18 6 3.8992 1.8380 -4.1215 19 6 5.1343 2.4550 -4.0511 20 6 6.1595 1.8692 -3.3321 21 6 5.9528 0.6612 -2.6927 22 16 3.7421 -1.2544 0.6252 23 8 3.9980 -2.6361 0.8369 24 8 4.7032 -0.2576 0.9446 25 6 2.0741 -0.7847 1.2286 26 1 -0.3634 -1.0266 0.0460 27 1 -0.3634 0.5532 0.8662 28 1 -0.3634 0.4735 -0.9120 29 1 1.9605 -0.1655 -2.1124 30 1 1.4987 -1.6980 -1.3382 31 1 4.6893 -5.2604 -4.1088 32 1 2.7290 0.1460 -3.5406 33 1 3.0972 2.2977 -4.6799 34 1 5.2971 3.3965 -4.5544 35 1 7.1230 2.3535 -3.2731 36 1 6.7549 0.2018 -2.1342 37 1 2.1373 -0.1441 2.1082 38 1 1.4686 -1.6682 1.4310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250411863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:45 Heat of formation + Delta-G solvation = -35.131141 kcal Electronic energy + Delta-G solvation = -22764.765363 eV Core-core repulsion = 19506.549727 eV Total energy + Delta-G solvation = -3258.215636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.82027 -37.14885 -36.36858 -35.25131 -34.44500 -32.28411 -30.53442 -30.22696 -27.83068 -27.28313 -25.03420 -22.74436 -22.02486 -20.62720 -20.29566 -18.28245 -17.13894 -16.76695 -16.41154 -15.95281 -15.14267 -14.91269 -14.64761 -14.36292 -14.18018 -13.46266 -13.37079 -13.10730 -12.79862 -12.73673 -12.51885 -12.26443 -12.08705 -11.95495 -11.52603 -11.46726 -11.33188 -11.17789 -11.04087 -10.95288 -10.70171 -10.49977 -10.16303 -10.05663 -9.91762 -9.45527 -8.79750 -8.27982 -8.05616 -7.91123 -6.37057 -4.33337 0.74436 2.03170 2.05528 3.14992 3.27412 3.31467 3.37449 4.10691 4.25021 4.26829 4.52414 4.56514 4.87234 5.06788 5.16583 5.30333 5.45215 5.47552 5.48759 5.61105 5.63769 5.64141 5.80424 5.89255 5.93868 6.06721 6.09138 6.20630 6.31638 6.41571 6.55672 6.67688 6.81882 7.07704 7.09816 7.29794 7.51361 7.63444 7.67431 8.24456 8.68670 9.24588 10.72798 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.009562 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.958577 B = 2927.691827 C = 4067.809542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.095 0.905 4 C 0.084 3.916 5 N -0.960 5.960 6 C 0.301 3.699 7 H 0.058 0.942 8 C -0.492 4.492 9 H 0.086 0.914 10 C 0.087 3.913 11 N -0.866 5.866 12 Si 0.854 3.146 13 H -0.259 1.259 14 H -0.279 1.279 15 H -0.260 1.260 16 C -0.045 4.045 17 C -0.102 4.102 18 C -0.128 4.128 19 C -0.143 4.143 20 C -0.123 4.123 21 C -0.125 4.125 22 S 2.533 3.467 23 O -0.962 6.962 24 O -0.976 6.976 25 C -0.602 4.602 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.271 0.729 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 10.512 5.184 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.113 0.887 4 C -0.042 4.042 5 N -0.803 5.803 6 C 0.201 3.799 7 H 0.076 0.924 8 C -0.534 4.534 9 H 0.104 0.896 10 C -0.121 4.121 11 N -0.501 5.501 12 Si 0.679 3.321 13 H -0.183 1.183 14 H -0.204 1.204 15 H -0.184 1.184 16 C -0.048 4.048 17 C -0.120 4.120 18 C -0.146 4.146 19 C -0.162 4.162 20 C -0.141 4.141 21 C -0.144 4.144 22 S 2.633 3.367 23 O -0.951 6.951 24 O -0.965 6.965 25 C -0.731 4.731 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.358 10.015 5.623 12.284 hybrid contribution 0.237 -0.078 0.261 0.361 sum -4.121 9.937 5.884 12.262 Atomic orbital electron populations 1.21620 0.92537 1.02665 1.02201 1.22214 0.98396 0.99737 0.91344 0.88712 1.22003 0.83690 0.99990 0.98539 1.58605 1.13766 1.86779 1.21172 1.17755 0.86795 0.89840 0.85487 0.92445 1.21121 1.12462 1.00026 1.19759 0.89581 1.25063 0.97870 0.94985 0.94159 1.69884 1.37707 1.05157 1.37324 0.87158 0.84505 0.79305 0.81093 1.18340 1.20417 1.18434 1.20626 0.92916 0.95488 0.95773 1.21025 0.99343 0.94643 0.96985 1.21047 0.96945 0.96295 1.00352 1.20896 0.93925 1.00061 1.01279 1.20963 0.98548 0.96005 0.98573 1.21081 0.97478 0.95453 1.00364 1.07706 0.77090 0.75360 0.76581 1.93596 1.83572 1.32770 1.85148 1.93542 1.57824 1.60923 1.84216 1.30976 1.24672 1.10459 1.07018 0.91858 0.92174 0.91662 0.89022 0.90991 0.91860 0.85909 0.87050 0.87243 0.87057 0.86909 0.85382 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.26 37.15 0.34 -0.92 16 2 C -0.10 -1.20 3.42 -88.68 -0.30 -1.50 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.08 1.35 5.57 -3.18 -0.02 1.33 16 5 N -0.96 -19.53 3.09 -108.74 -0.34 -19.87 16 6 C 0.30 6.99 2.71 -70.24 -0.19 6.80 16 7 H 0.06 1.43 4.36 -51.93 -0.23 1.20 16 8 C -0.49 -12.77 8.31 -34.44 -0.29 -13.05 16 9 H 0.09 2.32 7.67 -52.48 -0.40 1.92 16 10 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 11 N -0.87 -24.79 13.96 55.43 0.77 -24.02 16 12 Si 0.85 21.27 27.11 -169.99 -4.61 16.67 16 13 H -0.26 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.26 -6.14 6.59 56.52 0.37 -5.77 16 16 C -0.05 -0.95 4.99 -104.62 -0.52 -1.47 16 17 C -0.10 -1.89 8.17 -39.58 -0.32 -2.21 16 18 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 19 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 20 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 21 C -0.12 -2.49 9.67 -39.58 -0.38 -2.87 16 22 S 2.53 48.89 6.16 -107.50 -0.66 48.23 16 23 O -0.96 -22.31 18.14 -57.41 -1.04 -23.36 16 24 O -0.98 -20.94 18.14 -57.41 -1.04 -21.99 16 25 C -0.60 -7.77 6.92 38.55 0.27 -7.51 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.40 4.87 -51.93 -0.25 1.14 16 30 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.12 2.18 5.53 -52.49 -0.29 1.89 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 2.22 7.95 -52.49 -0.42 1.80 16 37 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.13 1.53 8.08 -51.93 -0.42 1.11 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -32.84 321.77 -9.75 -42.59 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.97 Total: 3.59 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -2.71 Total: -26.69 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.44 Total: -43.88 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -2.08 Total: -45.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.61 Total: 16.67 kcal Atomic # 16 Polarization: 48.89 SS G_CDS: -0.66 Total: 48.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.84 -9.75 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.454 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds