Wall clock time and date at job start Tue Mar 31 2020 07:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.52224 * 2 1 4 4 C 1.54062 * 110.46525 * 237.43715 * 2 1 3 5 5 N 1.47070 * 110.10797 * 196.09771 * 4 2 1 6 6 C 1.46505 * 126.29887 * 208.99368 * 5 4 2 7 7 H 1.09003 * 109.46851 * 185.91654 * 6 5 4 8 8 C 1.50695 * 109.47180 * 305.91770 * 6 5 4 9 9 H 1.08005 * 120.00274 * 62.85628 * 8 6 5 10 10 C 1.37881 * 120.00113 * 242.85527 * 8 6 5 11 11 N 1.31510 * 119.99925 * 171.23633 * 10 8 6 12 12 Si 1.86794 * 119.99833 * 351.24080 * 10 8 6 13 13 H 1.48507 * 109.47290 * 89.70871 * 12 10 8 14 14 H 1.48504 * 109.47199 * 209.70549 * 12 10 8 15 15 H 1.48501 * 109.47252 * 329.71055 * 12 10 8 16 16 C 1.50695 * 109.47131 * 65.91748 * 6 5 4 17 17 C 1.38238 * 120.00532 * 295.77860 * 16 6 5 18 18 C 1.38228 * 120.00622 * 179.97438 * 17 16 6 19 19 C 1.38238 * 119.99710 * 0.25814 * 18 17 16 20 20 C 1.38239 * 119.99945 * 359.46724 * 19 18 17 21 21 C 1.38234 * 119.99853 * 0.53060 * 20 19 18 22 22 S 1.67000 * 107.39702 * 29.25549 * 5 4 2 23 23 O 1.42105 * 105.13221 * 111.17411 * 22 5 4 24 24 O 1.42101 * 105.13321 * 240.84644 * 22 5 4 25 25 C 1.55609 * 110.46938 * 122.56666 * 2 1 3 26 26 H 1.08996 * 109.47603 * 182.56618 * 1 2 3 27 27 H 1.09010 * 109.47042 * 302.56472 * 1 2 3 28 28 H 1.08999 * 109.47427 * 62.56053 * 1 2 3 29 29 H 1.08999 * 109.35841 * 75.91620 * 4 2 1 30 30 H 1.08997 * 109.35952 * 316.27532 * 4 2 1 31 31 H 0.97000 * 119.99878 * 179.97438 * 11 10 8 32 32 H 1.08002 * 119.99653 * 359.97438 * 17 16 6 33 33 H 1.07995 * 120.00529 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.00134 * 179.71768 * 19 18 17 35 35 H 1.07998 * 120.00017 * 180.29535 * 20 19 18 36 36 H 1.07999 * 119.99764 * 179.76676 * 21 20 19 37 37 H 1.09003 * 111.16145 * 274.48495 * 25 2 1 38 38 H 1.09001 * 111.16647 * 38.70590 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9121 1.0208 0.0000 4 6 2.0686 -0.7769 -1.2165 5 7 3.4885 -1.1049 -1.0186 6 6 4.4941 -1.2752 -2.0704 7 1 5.4296 -1.6163 -1.6269 8 6 4.0097 -2.2956 -3.0679 9 1 3.1157 -2.1060 -3.6436 10 6 4.7077 -3.4713 -3.2457 11 7 4.1981 -4.4334 -3.9835 12 14 6.3770 -3.6976 -2.4386 13 1 6.1980 -4.2910 -1.0890 14 1 7.2105 -4.6024 -3.2705 15 1 7.0495 -2.3795 -2.3144 16 6 4.7195 0.0414 -2.7679 17 6 3.6927 0.6300 -3.4822 18 6 3.8992 1.8380 -4.1215 19 6 5.1343 2.4550 -4.0511 20 6 6.1595 1.8692 -3.3321 21 6 5.9528 0.6612 -2.6927 22 16 3.7421 -1.2544 0.6252 23 8 3.9980 -2.6361 0.8369 24 8 4.7032 -0.2576 0.9446 25 6 2.0741 -0.7847 1.2286 26 1 -0.3634 -1.0266 0.0460 27 1 -0.3634 0.5532 0.8662 28 1 -0.3634 0.4735 -0.9120 29 1 1.9605 -0.1655 -2.1124 30 1 1.4987 -1.6980 -1.3382 31 1 4.6893 -5.2604 -4.1088 32 1 2.7290 0.1460 -3.5406 33 1 3.0972 2.2977 -4.6799 34 1 5.2971 3.3965 -4.5544 35 1 7.1230 2.3535 -3.2731 36 1 6.7549 0.2018 -2.1342 37 1 2.1373 -0.1441 2.1082 38 1 1.4686 -1.6682 1.4310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250411863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:45 Heat of formation + Delta-G solvation = -58.847786 kcal Electronic energy + Delta-G solvation = -22765.793794 eV Core-core repulsion = 19506.549727 eV Total energy + Delta-G solvation = -3259.244067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25967 -38.42137 -38.00706 -36.88963 -35.99614 -34.15741 -31.92455 -31.60817 -29.19079 -28.60564 -26.52081 -24.33097 -23.40282 -21.85961 -21.71883 -19.85859 -19.06144 -18.27346 -17.83524 -17.41995 -16.69456 -16.58325 -16.13487 -15.72215 -15.56224 -14.99329 -14.77403 -14.65119 -14.31266 -13.93478 -13.87748 -13.70078 -13.41867 -13.22279 -13.16953 -12.99918 -12.95169 -12.84074 -12.55921 -12.21129 -12.05258 -11.94189 -11.83515 -11.51978 -11.40720 -11.22960 -10.87518 -9.66012 -9.55221 -9.43512 -8.45334 -6.43019 -0.70264 0.62934 0.67140 1.17944 1.25465 1.27926 1.72278 2.20121 2.71494 2.93020 3.09823 3.15287 3.40694 3.63352 3.94842 4.05200 4.19199 4.22440 4.31101 4.36659 4.44704 4.50405 4.57692 4.70005 4.82276 4.89403 4.98014 5.10302 5.18788 5.21222 5.26070 5.33776 5.45325 5.45750 5.72168 5.74641 5.92398 6.02127 6.23953 6.31863 6.60387 7.19559 8.69095 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.009562 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.958577 B = 2927.691827 C = 4067.809542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 H 0.110 0.890 4 C 0.073 3.927 5 N -0.975 5.975 6 C 0.307 3.693 7 H 0.030 0.970 8 C -0.489 4.489 9 H 0.067 0.933 10 C 0.041 3.959 11 N -0.915 5.915 12 Si 0.886 3.114 13 H -0.280 1.280 14 H -0.265 1.265 15 H -0.249 1.249 16 C -0.075 4.075 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.153 4.153 22 S 2.510 3.490 23 O -1.017 7.017 24 O -1.006 7.006 25 C -0.549 4.549 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.270 0.730 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 14.370 5.988 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.052 4.052 5 N -0.817 5.817 6 C 0.205 3.795 7 H 0.048 0.952 8 C -0.530 4.530 9 H 0.085 0.915 10 C -0.161 4.161 11 N -0.553 5.553 12 Si 0.711 3.289 13 H -0.206 1.206 14 H -0.190 1.190 15 H -0.174 1.174 16 C -0.077 4.077 17 C -0.130 4.130 18 C -0.139 4.139 19 C -0.150 4.150 20 C -0.140 4.140 21 C -0.172 4.172 22 S 2.616 3.384 23 O -1.006 7.006 24 O -0.995 6.995 25 C -0.684 4.684 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.190 0.810 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.371 13.858 6.366 16.527 hybrid contribution 0.713 -1.017 0.160 1.252 sum -5.658 12.841 6.526 15.476 Atomic orbital electron populations 1.21672 0.89397 1.03590 1.04111 1.22333 1.00590 0.99457 0.88431 0.87223 1.22336 0.81124 1.00572 1.01212 1.57868 1.15357 1.86917 1.21583 1.17429 0.86063 0.90760 0.85256 0.95189 1.21213 1.11415 1.00325 1.20059 0.91477 1.25553 0.99950 0.95474 0.95127 1.69953 1.38982 1.05936 1.40455 0.86651 0.83126 0.79709 0.79425 1.20603 1.19020 1.17351 1.20494 0.94437 0.95371 0.97440 1.21112 0.98772 0.95841 0.97273 1.21457 0.98354 0.94943 0.99164 1.21395 0.92906 1.01019 0.99704 1.21301 1.00419 0.94684 0.97635 1.21187 0.96882 0.97268 1.01872 1.07820 0.80198 0.74220 0.76185 1.93539 1.85988 1.35591 1.85501 1.93504 1.61132 1.60744 1.84168 1.30733 1.16669 1.12374 1.08648 0.91579 0.89534 0.90524 0.88368 0.91644 0.92049 0.85900 0.83406 0.83108 0.84264 0.88404 0.80950 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.26 71.98 0.67 -1.12 16 2 C -0.09 -1.81 3.42 -9.54 -0.03 -1.84 16 3 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.07 2.25 5.57 86.63 0.48 2.74 16 5 N -0.98 -40.38 3.09 -497.94 -1.54 -41.92 16 6 C 0.31 14.90 2.71 43.50 0.12 15.02 16 7 H 0.03 1.60 4.36 -2.39 -0.01 1.58 16 8 C -0.49 -26.83 8.31 25.60 0.21 -26.62 16 9 H 0.07 3.83 7.67 -2.91 -0.02 3.81 16 10 C 0.04 2.41 5.47 84.66 0.46 2.87 16 11 N -0.91 -55.56 13.96 21.45 0.30 -55.27 16 12 Si 0.89 46.35 27.11 68.60 1.86 48.21 16 13 H -0.28 -15.42 7.11 99.48 0.71 -14.71 16 14 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.25 -12.40 6.59 99.48 0.66 -11.74 16 16 C -0.07 -3.20 4.99 -19.87 -0.10 -3.30 16 17 C -0.11 -4.03 8.17 22.27 0.18 -3.85 16 18 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 19 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 20 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 21 C -0.15 -6.15 9.67 22.27 0.22 -5.94 16 22 S 2.51 97.03 6.16 -56.49 -0.35 96.68 16 23 O -1.02 -49.11 18.14 -127.77 -2.32 -51.43 16 24 O -1.01 -43.65 18.14 -127.77 -2.32 -45.96 16 25 C -0.55 -11.80 6.92 72.88 0.50 -11.30 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 2.89 4.87 -2.39 -0.01 2.88 16 30 H 0.07 2.07 8.07 -2.39 -0.02 2.06 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.12 4.31 5.53 -2.91 -0.02 4.29 16 33 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.10 4.07 7.95 -2.91 -0.02 4.04 16 37 H 0.17 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.16 2.86 8.08 -2.39 -0.02 2.84 16 Total: -1.00 -79.27 321.77 0.03 -79.24 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.01 Total: 14.07 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.38 Total: -43.62 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -1.24 Total: -97.18 kcal Atomic # 8 Polarization: -92.76 SS G_CDS: -4.63 Total: -97.39 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.86 Total: 48.21 kcal Atomic # 16 Polarization: 97.03 SS G_CDS: -0.35 Total: 96.68 kcal Total: -79.27 0.03 -79.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250411863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.391 kcal (2) G-P(sol) polarization free energy of solvation -79.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds