Wall clock time and date at job start Tue Mar 31 2020 07:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47454 * 2 1 4 4 S 1.81003 * 109.47086 * 239.99427 * 2 1 3 5 5 C 1.76195 * 99.99907 * 65.00586 * 4 2 1 6 6 N 1.32389 * 126.25739 * 359.68961 * 5 4 2 7 7 N 1.28517 * 110.20091 * 179.81795 * 6 5 4 8 8 C 1.33097 * 109.75013 * 0.45306 * 7 6 5 9 9 C 1.39776 * 126.56669 * 179.75006 * 8 7 6 10 10 H 1.08003 * 119.99810 * 179.97438 * 9 8 7 11 11 C 1.40079 * 120.00203 * 359.96902 * 9 8 7 12 12 N 1.30818 * 119.99889 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99923 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47473 * 60.00374 * 13 11 9 15 15 H 1.48509 * 109.47137 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47242 * 299.99996 * 13 11 9 17 17 N 1.36672 * 126.25958 * 179.97438 * 5 4 2 18 18 C 1.46497 * 127.15095 * 359.96769 * 17 5 4 19 19 C 1.50707 * 109.46711 * 119.99820 * 2 1 3 20 20 N 1.31073 * 126.65801 * 74.98009 * 19 2 1 21 21 N 1.28839 * 107.98794 * 180.02562 * 20 19 2 22 22 N 1.28744 * 109.39875 * 359.97438 * 21 20 19 23 23 N 1.29019 * 108.80455 * 0.02562 * 22 21 20 24 24 C 1.46501 * 126.43604 * 179.97438 * 23 22 21 25 25 H 1.08992 * 109.47673 * 300.00558 * 1 2 3 26 26 H 1.09005 * 109.46704 * 60.00255 * 1 2 3 27 27 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00063 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46853 * 90.02004 * 18 17 5 30 30 H 1.09001 * 109.47018 * 210.01508 * 18 17 5 31 31 H 1.08992 * 109.47057 * 330.01947 * 18 17 5 32 32 H 1.08997 * 109.47678 * 90.01913 * 24 23 22 33 33 H 1.09004 * 109.47433 * 210.02564 * 24 23 22 34 34 H 1.09010 * 109.47042 * 330.02023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.5440 0.2420 -2.7257 6 7 0.8530 1.3540 -2.5288 7 7 0.5861 1.9157 -3.6535 8 6 1.0853 1.1875 -4.6495 9 6 0.9946 1.4713 -6.0152 10 1 1.4417 0.8031 -6.7364 11 6 0.3237 2.6221 -6.4484 12 7 -0.2175 3.4316 -5.5748 13 14 0.2019 3.0008 -8.2734 14 1 -0.5057 1.8922 -8.9630 15 1 -0.5515 4.2659 -8.4673 16 1 1.5664 3.1460 -8.8410 17 7 1.7121 0.0965 -4.0742 18 6 2.4111 -0.9890 -4.7666 19 6 2.0322 -0.7104 1.2306 20 7 2.0361 -2.0042 1.4405 21 7 2.5432 -2.2168 2.6056 22 7 2.8633 -1.0921 3.1443 23 7 2.5636 -0.1395 2.3274 24 6 2.7639 1.2943 2.5518 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.6818 4.2286 -5.8747 29 1 1.7067 -1.7901 -4.9905 30 1 2.8391 -0.6114 -5.6952 31 1 3.2074 -1.3731 -4.1292 32 1 3.7493 1.5849 2.1878 33 1 1.9985 1.8563 2.0165 34 1 2.6927 1.5086 3.6182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322445645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:05 Heat of formation + Delta-G solvation = 191.459834 kcal Electronic energy + Delta-G solvation = -20934.982368 eV Core-core repulsion = 17647.637612 eV Total energy + Delta-G solvation = -3287.344755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.25616 -40.62740 -35.89128 -34.81116 -33.77402 -33.37625 -31.07997 -29.36830 -28.54245 -26.57552 -25.61895 -24.86051 -23.41452 -21.82440 -20.93626 -20.52617 -17.69466 -17.43110 -17.39275 -16.63696 -15.57653 -15.26344 -14.82661 -14.65144 -14.23727 -13.99675 -13.72693 -13.35550 -13.23692 -12.85202 -12.43250 -12.32488 -12.26566 -11.98717 -11.59952 -11.43426 -11.33983 -11.14988 -10.99997 -10.96293 -10.48707 -10.33263 -10.00531 -9.79842 -9.69114 -8.81882 -8.54362 -8.50636 -6.97698 -6.73552 -4.66846 0.98154 1.57297 2.00130 2.26737 2.56692 2.86094 3.01733 3.03481 3.25555 3.71455 3.80494 4.08881 4.14741 4.30727 4.57524 4.64950 4.94944 5.00159 5.16737 5.22967 5.33980 5.48905 5.60895 5.73742 5.83409 5.96111 6.00099 6.03112 6.45568 6.65789 6.81780 7.15381 7.38524 7.77439 8.08747 8.52921 8.61302 8.75554 10.18661 10.50591 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.035862 B = 0.003687 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.583479 B = 7591.479315 C = 8051.564106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 H 0.120 0.880 4 S 0.008 5.992 5 C 0.035 3.965 6 N -0.285 5.285 7 N -0.332 5.332 8 C 0.349 3.651 9 C -0.446 4.446 10 H 0.084 0.916 11 C 0.079 3.921 12 N -0.736 5.736 13 Si 0.921 3.079 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.265 1.265 17 N -0.513 5.513 18 C 0.100 3.900 19 C 0.207 3.793 20 N -0.285 5.285 21 N -0.077 5.077 22 N -0.098 5.098 23 N -0.303 5.303 24 C 0.074 3.926 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.280 0.720 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -2.117 7.931 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.138 0.862 4 S 0.234 5.766 5 C -0.336 4.336 6 N -0.132 5.132 7 N -0.179 5.179 8 C 0.105 3.895 9 C -0.486 4.486 10 H 0.103 0.897 11 C -0.147 4.147 12 N -0.360 5.360 13 Si 0.745 3.255 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.190 1.190 17 N -0.215 5.215 18 C -0.045 4.045 19 C -0.072 4.072 20 N -0.135 5.135 21 N -0.070 5.070 22 N -0.084 5.084 23 N -0.105 5.105 24 C -0.067 4.067 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.481 -2.970 9.446 10.869 hybrid contribution -0.087 1.245 -1.899 2.273 sum 4.394 -1.725 7.546 8.901 Atomic orbital electron populations 1.22153 0.89508 1.03941 1.04747 1.21409 1.01214 1.00910 0.88801 0.86232 1.84987 1.70419 1.28757 0.92390 1.25328 1.16528 1.04876 0.86890 1.74421 1.12058 1.03433 1.23239 1.75447 1.27338 1.23087 0.92075 1.21597 0.90346 0.81718 0.95810 1.18100 1.34300 1.08277 0.87943 0.89749 1.25787 0.93732 0.95009 1.00146 1.69985 1.21734 1.08816 1.35420 0.86168 0.79364 0.78602 0.81395 1.18904 1.20045 1.18951 1.45993 1.48791 1.22583 1.04112 1.21525 0.96246 0.89039 0.97696 1.25362 0.99271 0.90244 0.92314 1.75095 1.17482 1.11151 1.09779 1.78611 1.11472 1.15397 1.01563 1.78849 1.19227 0.92355 1.17949 1.48370 1.39991 1.10524 1.11609 1.22500 1.05577 0.72519 1.06121 0.92364 0.87633 0.91089 0.90853 0.92311 0.90256 0.91532 0.88081 0.87195 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.99 37.16 0.33 -1.82 16 2 C 0.01 0.14 2.58 -27.88 -0.07 0.07 16 3 H 0.12 1.66 7.19 -51.92 -0.37 1.29 16 4 S 0.01 0.14 21.09 -107.50 -2.27 -2.12 16 5 C 0.04 0.78 7.78 -87.28 -0.68 0.11 16 6 N -0.28 -7.03 9.73 30.89 0.30 -6.73 16 7 N -0.33 -9.28 10.48 31.26 0.33 -8.96 16 8 C 0.35 9.23 7.53 -154.81 -1.17 8.06 16 9 C -0.45 -11.28 9.04 -38.32 -0.35 -11.62 16 10 H 0.08 1.93 7.30 -52.48 -0.38 1.55 16 11 C 0.08 1.93 5.50 -17.29 -0.10 1.83 16 12 N -0.74 -19.24 11.94 55.56 0.66 -18.58 16 13 Si 0.92 17.74 29.56 -169.99 -5.03 12.72 16 14 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 15 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 17 N -0.51 -11.69 3.26 -123.18 -0.40 -12.10 16 18 C 0.10 1.74 10.88 59.85 0.65 2.39 16 19 C 0.21 2.98 6.74 -155.43 -1.05 1.93 16 20 N -0.29 -4.75 12.18 32.70 0.40 -4.35 16 21 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 22 N -0.10 -1.40 13.29 60.35 0.80 -0.60 16 23 N -0.30 -3.67 3.75 -65.02 -0.24 -3.91 16 24 C 0.07 0.50 11.04 59.85 0.66 1.16 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.11 1.92 5.88 -51.93 -0.31 1.61 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 31 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.60 7.41 -51.93 -0.38 0.22 16 34 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -32.96 312.26 -5.18 -38.14 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.49 Total: 0.12 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.76 Total: 2.11 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 2.66 Total: -55.67 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.27 Total: -2.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.96 -5.18 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322445645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.597 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds