Wall clock time and date at job start Tue Mar 31 2020 07:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47454 * 2 1 4 4 S 1.81003 * 109.47086 * 239.99427 * 2 1 3 5 5 C 1.76195 * 99.99907 * 65.00586 * 4 2 1 6 6 N 1.32389 * 126.25739 * 359.68961 * 5 4 2 7 7 N 1.28517 * 110.20091 * 179.81795 * 6 5 4 8 8 C 1.33097 * 109.75013 * 0.45306 * 7 6 5 9 9 C 1.39776 * 126.56669 * 179.75006 * 8 7 6 10 10 H 1.08003 * 119.99810 * 179.97438 * 9 8 7 11 11 C 1.40079 * 120.00203 * 359.96902 * 9 8 7 12 12 N 1.30818 * 119.99889 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99923 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47473 * 60.00374 * 13 11 9 15 15 H 1.48509 * 109.47137 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47242 * 299.99996 * 13 11 9 17 17 N 1.36672 * 126.25958 * 179.97438 * 5 4 2 18 18 C 1.46497 * 127.15095 * 359.96769 * 17 5 4 19 19 C 1.50707 * 109.46711 * 119.99820 * 2 1 3 20 20 N 1.31073 * 126.65801 * 74.98009 * 19 2 1 21 21 N 1.28839 * 107.98794 * 180.02562 * 20 19 2 22 22 N 1.28744 * 109.39875 * 359.97438 * 21 20 19 23 23 N 1.29019 * 108.80455 * 0.02562 * 22 21 20 24 24 C 1.46501 * 126.43604 * 179.97438 * 23 22 21 25 25 H 1.08992 * 109.47673 * 300.00558 * 1 2 3 26 26 H 1.09005 * 109.46704 * 60.00255 * 1 2 3 27 27 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00063 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46853 * 90.02004 * 18 17 5 30 30 H 1.09001 * 109.47018 * 210.01508 * 18 17 5 31 31 H 1.08992 * 109.47057 * 330.01947 * 18 17 5 32 32 H 1.08997 * 109.47678 * 90.01913 * 24 23 22 33 33 H 1.09004 * 109.47433 * 210.02564 * 24 23 22 34 34 H 1.09010 * 109.47042 * 330.02023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.5440 0.2420 -2.7257 6 7 0.8530 1.3540 -2.5288 7 7 0.5861 1.9157 -3.6535 8 6 1.0853 1.1875 -4.6495 9 6 0.9946 1.4713 -6.0152 10 1 1.4417 0.8031 -6.7364 11 6 0.3237 2.6221 -6.4484 12 7 -0.2175 3.4316 -5.5748 13 14 0.2019 3.0008 -8.2734 14 1 -0.5057 1.8922 -8.9630 15 1 -0.5515 4.2659 -8.4673 16 1 1.5664 3.1460 -8.8410 17 7 1.7121 0.0965 -4.0742 18 6 2.4111 -0.9890 -4.7666 19 6 2.0322 -0.7104 1.2306 20 7 2.0361 -2.0042 1.4405 21 7 2.5432 -2.2168 2.6056 22 7 2.8633 -1.0921 3.1443 23 7 2.5636 -0.1395 2.3274 24 6 2.7639 1.2943 2.5518 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.6818 4.2286 -5.8747 29 1 1.7067 -1.7901 -4.9905 30 1 2.8391 -0.6114 -5.6952 31 1 3.2074 -1.3731 -4.1292 32 1 3.7493 1.5849 2.1878 33 1 1.9985 1.8563 2.0165 34 1 2.6927 1.5086 3.6182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322445645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:05 Heat of formation + Delta-G solvation = 169.950447 kcal Electronic energy + Delta-G solvation = -20935.915085 eV Core-core repulsion = 17647.637612 eV Total energy + Delta-G solvation = -3288.277473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.091 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.37267 -42.43672 -36.91306 -36.02761 -35.56719 -35.06453 -32.27660 -31.16500 -29.35926 -28.20644 -27.37920 -26.05030 -24.48886 -23.07798 -22.73254 -22.17923 -19.26265 -18.67895 -18.43093 -18.07493 -17.27404 -16.59180 -16.41438 -16.13390 -15.73224 -15.03808 -14.82285 -14.62756 -14.37208 -14.02853 -13.80831 -13.76650 -13.38995 -13.27979 -13.03379 -12.94827 -12.79533 -12.70938 -12.32516 -12.00702 -11.94763 -11.69535 -11.61456 -11.40020 -11.16647 -10.56126 -10.34010 -10.26307 -8.59619 -8.52328 -6.55318 -0.19755 0.34090 0.91423 0.99393 1.20415 1.22969 1.44878 1.58668 1.63951 2.20549 2.46664 2.51695 2.56752 3.14022 3.36663 3.63705 3.79275 4.08829 4.09887 4.18812 4.21330 4.47118 4.53343 4.59642 4.64830 4.64929 4.76389 4.88248 4.95614 5.02740 5.23532 5.36710 5.59236 6.05901 6.24232 6.78634 6.93561 7.38678 8.42655 8.65842 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.035862 B = 0.003687 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.583479 B = 7591.479315 C = 8051.564106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 H 0.133 0.867 4 S 0.032 5.968 5 C 0.049 3.951 6 N -0.310 5.310 7 N -0.382 5.382 8 C 0.321 3.679 9 C -0.473 4.473 10 H 0.101 0.899 11 C 0.033 3.967 12 N -0.784 5.784 13 Si 1.002 2.998 14 H -0.256 1.256 15 H -0.272 1.272 16 H -0.255 1.255 17 N -0.520 5.520 18 C 0.092 3.908 19 C 0.204 3.796 20 N -0.309 5.309 21 N -0.103 5.103 22 N -0.093 5.093 23 N -0.285 5.285 24 C 0.056 3.944 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.285 0.715 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 -2.285 7.964 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.151 0.849 4 S 0.258 5.742 5 C -0.324 4.324 6 N -0.156 5.156 7 N -0.229 5.229 8 C 0.075 3.925 9 C -0.513 4.513 10 H 0.119 0.881 11 C -0.188 4.188 12 N -0.409 5.409 13 Si 0.821 3.179 14 H -0.181 1.181 15 H -0.197 1.197 16 H -0.179 1.179 17 N -0.221 5.221 18 C -0.051 4.051 19 C -0.076 4.076 20 N -0.159 5.159 21 N -0.097 5.097 22 N -0.079 5.079 23 N -0.088 5.088 24 C -0.082 4.082 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.463 -3.141 9.497 11.398 hybrid contribution -0.307 1.232 -1.684 2.109 sum 5.156 -1.909 7.814 9.554 Atomic orbital electron populations 1.22030 0.89566 1.03639 1.04512 1.21390 1.01121 1.01278 0.87746 0.84898 1.84938 1.69765 1.27531 0.92007 1.26167 1.13856 1.04377 0.88032 1.74330 1.13820 1.04840 1.22565 1.75326 1.29218 1.25047 0.93306 1.21963 0.91308 0.82915 0.96343 1.18587 1.35224 1.09373 0.88082 0.88119 1.26866 0.92543 0.94225 1.05164 1.70118 1.23023 1.09634 1.38082 0.84964 0.79702 0.78460 0.74761 1.18058 1.19667 1.17915 1.46318 1.48467 1.22879 1.04466 1.21847 0.96892 0.88051 0.98299 1.25026 1.00055 0.89838 0.92665 1.75015 1.18129 1.12533 1.10251 1.78600 1.12805 1.16424 1.01838 1.78780 1.18698 0.92430 1.18037 1.48715 1.37925 1.11935 1.10233 1.23099 1.07256 0.69478 1.08406 0.89581 0.90781 0.91411 0.90505 0.90850 0.89205 0.89354 0.86115 0.85703 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.99 71.98 0.65 -3.34 16 2 C 0.02 0.49 2.58 29.85 0.08 0.57 16 3 H 0.13 3.44 7.19 -2.40 -0.02 3.42 16 4 S 0.03 1.07 21.09 -56.49 -1.19 -0.12 16 5 C 0.05 2.17 7.78 179.18 1.39 3.56 16 6 N -0.31 -15.63 9.73 -56.18 -0.55 -16.18 16 7 N -0.38 -22.07 10.48 -55.02 -0.58 -22.65 16 8 C 0.32 17.29 7.53 133.23 1.00 18.29 16 9 C -0.47 -24.14 9.04 23.09 0.21 -23.93 16 10 H 0.10 4.57 7.30 -2.91 -0.02 4.55 16 11 C 0.03 1.64 5.50 85.29 0.47 2.11 16 12 N -0.78 -42.18 11.94 21.85 0.26 -41.92 16 13 Si 1.00 36.16 29.56 68.60 2.03 38.19 16 14 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 15 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 16 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 17 N -0.52 -23.65 3.26 -543.63 -1.77 -25.42 16 18 C 0.09 3.08 10.88 127.77 1.39 4.47 16 19 C 0.20 5.47 6.74 138.14 0.93 6.40 16 20 N -0.31 -9.87 12.18 -50.45 -0.61 -10.49 16 21 N -0.10 -3.28 13.43 37.01 0.50 -2.78 16 22 N -0.09 -2.48 13.29 37.02 0.49 -1.99 16 23 N -0.29 -6.19 3.75 -359.63 -1.35 -7.53 16 24 C 0.06 0.57 11.04 127.77 1.41 1.98 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 2.70 5.88 -2.38 -0.01 2.69 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.80 7.53 -2.39 -0.02 2.78 16 31 H 0.09 2.54 7.85 -2.39 -0.02 2.52 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 0.95 7.41 -2.39 -0.02 0.93 16 34 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -73.99 312.26 5.91 -68.09 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.15 Total: 12.70 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 7.53 Total: 10.10 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -3.61 Total: -128.96 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -1.19 Total: -0.12 kcal Total: -73.99 5.91 -68.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322445645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.035 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds