Wall clock time and date at job start Tue Mar 31 2020 07:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46830 * 2 1 4 4 S 1.81001 * 109.47174 * 120.00553 * 2 1 3 5 5 C 1.76202 * 99.99784 * 294.99609 * 4 2 1 6 6 N 1.32388 * 126.26021 * 359.97438 * 5 4 2 7 7 N 1.28516 * 110.20609 * 180.02562 * 6 5 4 8 8 C 1.33098 * 109.74302 * 0.02562 * 7 6 5 9 9 C 1.39776 * 126.56257 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36669 * 126.25987 * 180.30691 * 5 4 2 18 18 C 1.46505 * 127.15024 * 359.97438 * 17 5 4 19 19 C 1.50697 * 109.46722 * 240.00298 * 2 1 3 20 20 N 1.31072 * 126.66242 * 285.01885 * 19 2 1 21 21 N 1.28843 * 107.99285 * 179.97438 * 20 19 2 22 22 N 1.28740 * 109.39487 * 0.02562 * 21 20 19 23 23 N 1.29020 * 108.80916 * 359.74303 * 22 21 20 24 24 C 1.46507 * 126.43703 * 180.24636 * 23 22 21 25 25 H 1.09000 * 109.47008 * 299.99354 * 1 2 3 26 26 H 1.08999 * 109.47357 * 59.99630 * 1 2 3 27 27 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 29 29 H 1.08991 * 109.47295 * 270.14314 * 18 17 5 30 30 H 1.08996 * 109.46934 * 30.14387 * 18 17 5 31 31 H 1.09000 * 109.46691 * 150.13746 * 18 17 5 32 32 H 1.09001 * 109.46848 * 270.18141 * 24 23 22 33 33 H 1.09003 * 109.46827 * 30.17687 * 24 23 22 34 34 H 1.08995 * 109.46922 * 150.17910 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8534 1.4778 5 6 1.5440 0.2421 2.7257 6 7 0.8583 1.3572 2.5285 7 7 0.5868 1.9162 3.6535 8 6 1.0863 1.1881 4.6494 9 6 0.9960 1.4721 6.0150 10 1 1.5252 0.8596 6.7301 11 6 0.2194 2.5513 6.4562 12 7 0.1990 2.8667 7.7255 13 14 -0.7873 3.5396 5.2318 14 1 -1.5153 4.6189 5.9464 15 1 0.1164 4.1392 4.2175 16 1 -1.7639 2.6463 4.5584 17 7 1.7167 0.0993 4.0739 18 6 2.4206 -0.9832 4.7660 19 6 2.0322 -0.7103 -1.2305 20 7 2.0362 -2.0041 -1.4405 21 7 2.5432 -2.2167 -2.6057 22 7 2.8634 -1.0920 -3.1443 23 7 2.5592 -0.1390 -2.3294 24 6 2.7537 1.2952 -2.5564 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.6611 2.3096 8.3713 29 1 1.7196 -1.7869 4.9910 30 1 3.2178 -1.3644 4.1279 31 1 2.8482 -0.6035 5.6939 32 1 3.7391 1.5898 -2.1955 33 1 2.6788 1.5077 -3.6229 34 1 1.9878 1.8551 -2.0197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322445646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:07 Heat of formation + Delta-G solvation = 179.283439 kcal Electronic energy + Delta-G solvation = -21059.335468 eV Core-core repulsion = 17771.462704 eV Total energy + Delta-G solvation = -3287.872764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.35404 -41.06938 -35.99302 -34.95021 -34.01231 -33.65660 -31.23731 -30.03405 -28.64574 -26.84210 -25.45070 -24.98394 -23.52054 -21.94608 -21.50028 -20.31199 -18.30878 -17.78905 -17.49009 -17.05076 -15.63489 -15.30094 -15.16936 -14.69012 -14.11905 -13.96843 -13.78749 -13.48156 -13.30689 -12.99929 -12.84295 -12.70692 -12.36464 -12.16987 -11.94051 -11.74568 -11.28727 -11.12034 -11.06424 -10.95148 -10.50100 -10.13124 -9.95482 -9.67791 -9.48780 -9.23524 -8.79597 -8.51304 -7.52135 -7.25853 -4.94946 0.85708 1.42267 1.88555 2.12020 2.34476 2.77836 3.47861 3.49821 3.58285 3.76019 3.95185 3.99936 4.03309 4.31290 4.45485 4.56340 4.84618 4.86701 5.00989 5.04118 5.22557 5.30283 5.51185 5.60346 5.66087 5.84133 5.85226 5.90349 6.20337 6.31544 6.57284 7.00500 7.30356 7.40535 7.94882 8.23696 8.43366 8.45176 9.85848 9.97454 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.029601 B = 0.004203 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.682323 B = 6660.910325 C = 7265.213326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.007 3.993 3 H 0.121 0.879 4 S 0.020 5.980 5 C 0.056 3.944 6 N -0.269 5.269 7 N -0.415 5.415 8 C 0.347 3.653 9 C -0.490 4.490 10 H 0.084 0.916 11 C 0.064 3.936 12 N -0.805 5.805 13 Si 1.113 2.887 14 H -0.311 1.311 15 H -0.260 1.260 16 H -0.280 1.280 17 N -0.510 5.510 18 C 0.100 3.900 19 C 0.205 3.795 20 N -0.285 5.285 21 N -0.075 5.075 22 N -0.096 5.096 23 N -0.302 5.302 24 C 0.074 3.926 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.284 0.716 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -2.717 -13.223 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.139 0.861 4 S 0.246 5.754 5 C -0.318 4.318 6 N -0.113 5.113 7 N -0.265 5.265 8 C 0.105 3.895 9 C -0.531 4.531 10 H 0.102 0.898 11 C -0.159 4.159 12 N -0.428 5.428 13 Si 0.941 3.059 14 H -0.241 1.241 15 H -0.186 1.186 16 H -0.206 1.206 17 N -0.211 5.211 18 C -0.044 4.044 19 C -0.074 4.074 20 N -0.134 5.134 21 N -0.069 5.069 22 N -0.082 5.082 23 N -0.104 5.104 24 C -0.068 4.068 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.581 -2.505 -14.718 15.353 hybrid contribution 1.177 -0.506 1.445 1.932 sum 4.758 -3.011 -13.272 14.417 Atomic orbital electron populations 1.22163 0.89394 1.04151 1.04753 1.21446 1.01319 1.00999 0.88848 0.86074 1.85161 1.70162 1.28065 0.91995 1.25444 1.14999 1.04193 0.87141 1.74149 1.12439 1.03543 1.21198 1.73994 1.32660 1.26069 0.93761 1.21689 0.89766 0.82470 0.95573 1.19433 1.29748 1.15878 0.88053 0.89812 1.27380 0.94433 0.95006 0.99099 1.70669 1.34294 1.35248 1.02608 0.82700 0.76149 0.75048 0.71985 1.24085 1.18593 1.20615 1.45790 1.48858 1.22368 1.04073 1.21574 0.96261 0.88868 0.97738 1.25288 0.99615 0.90262 0.92245 1.75096 1.17415 1.11104 1.09827 1.78627 1.11399 1.15375 1.01508 1.78864 1.18998 0.92322 1.17974 1.48382 1.39980 1.10532 1.11529 1.22512 1.05608 0.72433 1.06205 0.87830 0.92106 0.90880 0.90442 0.91894 0.91152 0.90154 0.88044 0.87207 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.99 37.16 0.33 -1.63 16 2 C 0.01 0.09 2.57 -27.88 -0.07 0.02 16 3 H 0.12 1.49 7.20 -51.92 -0.37 1.12 16 4 S 0.02 0.32 21.09 -107.50 -2.27 -1.94 16 5 C 0.06 1.16 7.77 -87.28 -0.68 0.48 16 6 N -0.27 -6.14 9.74 30.89 0.30 -5.84 16 7 N -0.41 -10.65 7.52 31.26 0.23 -10.41 16 8 C 0.35 8.73 7.27 -154.81 -1.13 7.60 16 9 C -0.49 -12.57 9.50 -38.31 -0.36 -12.94 16 10 H 0.08 2.09 7.46 -52.49 -0.39 1.70 16 11 C 0.06 1.65 5.52 -17.29 -0.10 1.56 16 12 N -0.80 -20.87 13.65 55.56 0.76 -20.11 16 13 Si 1.11 26.62 25.90 -169.99 -4.40 22.22 16 14 H -0.31 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.26 -6.34 6.76 56.52 0.38 -5.96 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 N -0.51 -11.06 3.26 -123.18 -0.40 -11.46 16 18 C 0.10 1.68 10.89 59.85 0.65 2.33 16 19 C 0.21 2.73 6.73 -155.43 -1.05 1.68 16 20 N -0.28 -4.47 12.18 32.70 0.40 -4.07 16 21 N -0.08 -1.18 13.43 60.35 0.81 -0.37 16 22 N -0.10 -1.30 13.29 60.35 0.80 -0.49 16 23 N -0.30 -3.38 3.75 -65.02 -0.24 -3.62 16 24 C 0.07 0.42 11.04 59.85 0.66 1.09 16 25 H 0.10 1.70 5.89 -51.93 -0.31 1.40 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.28 7.01 8.72 -40.82 -0.36 6.65 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 31 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.11 0.48 7.41 -51.93 -0.38 0.10 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -31.95 307.80 -4.64 -36.60 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: -3.54 Total: -5.31 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.74 Total: 0.19 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 2.66 Total: -56.39 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -4.40 Total: 22.22 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.27 Total: -1.94 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.95 -4.64 -36.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322445646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.881 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds