Wall clock time and date at job start Tue Mar 31 2020 07:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46830 * 2 1 4 4 S 1.81001 * 109.47174 * 120.00553 * 2 1 3 5 5 C 1.76202 * 99.99784 * 294.99609 * 4 2 1 6 6 N 1.32388 * 126.26021 * 359.97438 * 5 4 2 7 7 N 1.28516 * 110.20609 * 180.02562 * 6 5 4 8 8 C 1.33098 * 109.74302 * 0.02562 * 7 6 5 9 9 C 1.39776 * 126.56257 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36669 * 126.25987 * 180.30691 * 5 4 2 18 18 C 1.46505 * 127.15024 * 359.97438 * 17 5 4 19 19 C 1.50697 * 109.46722 * 240.00298 * 2 1 3 20 20 N 1.31072 * 126.66242 * 285.01885 * 19 2 1 21 21 N 1.28843 * 107.99285 * 179.97438 * 20 19 2 22 22 N 1.28740 * 109.39487 * 0.02562 * 21 20 19 23 23 N 1.29020 * 108.80916 * 359.74303 * 22 21 20 24 24 C 1.46507 * 126.43703 * 180.24636 * 23 22 21 25 25 H 1.09000 * 109.47008 * 299.99354 * 1 2 3 26 26 H 1.08999 * 109.47357 * 59.99630 * 1 2 3 27 27 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 29 29 H 1.08991 * 109.47295 * 270.14314 * 18 17 5 30 30 H 1.08996 * 109.46934 * 30.14387 * 18 17 5 31 31 H 1.09000 * 109.46691 * 150.13746 * 18 17 5 32 32 H 1.09001 * 109.46848 * 270.18141 * 24 23 22 33 33 H 1.09003 * 109.46827 * 30.17687 * 24 23 22 34 34 H 1.08995 * 109.46922 * 150.17910 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8534 1.4778 5 6 1.5440 0.2421 2.7257 6 7 0.8583 1.3572 2.5285 7 7 0.5868 1.9162 3.6535 8 6 1.0863 1.1881 4.6494 9 6 0.9960 1.4721 6.0150 10 1 1.5252 0.8596 6.7301 11 6 0.2194 2.5513 6.4562 12 7 0.1990 2.8667 7.7255 13 14 -0.7873 3.5396 5.2318 14 1 -1.5153 4.6189 5.9464 15 1 0.1164 4.1392 4.2175 16 1 -1.7639 2.6463 4.5584 17 7 1.7167 0.0993 4.0739 18 6 2.4206 -0.9832 4.7660 19 6 2.0322 -0.7103 -1.2305 20 7 2.0362 -2.0041 -1.4405 21 7 2.5432 -2.2167 -2.6057 22 7 2.8634 -1.0920 -3.1443 23 7 2.5592 -0.1390 -2.3294 24 6 2.7537 1.2952 -2.5564 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.6611 2.3096 8.3713 29 1 1.7196 -1.7869 4.9910 30 1 3.2178 -1.3644 4.1279 31 1 2.8482 -0.6035 5.6939 32 1 3.7391 1.5898 -2.1955 33 1 2.6788 1.5077 -3.6229 34 1 1.9878 1.8551 -2.0197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322445646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:07 Heat of formation + Delta-G solvation = 158.596614 kcal Electronic energy + Delta-G solvation = -21060.232516 eV Core-core repulsion = 17771.462704 eV Total energy + Delta-G solvation = -3288.769812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.38136 -42.84059 -36.92575 -36.10575 -35.83941 -35.31225 -32.42699 -31.72842 -29.36361 -28.40351 -27.22031 -26.06325 -24.50723 -23.36760 -22.93199 -22.02418 -20.17064 -18.87428 -18.43472 -18.31284 -17.14365 -16.87756 -16.38443 -16.20802 -15.64710 -15.21001 -14.88874 -14.67599 -14.58511 -14.36943 -14.22909 -13.85901 -13.59703 -13.30885 -13.24893 -13.06568 -12.79492 -12.74904 -12.33359 -11.96759 -11.90552 -11.67995 -11.48738 -11.33299 -11.18804 -10.91005 -10.54790 -10.34255 -9.46739 -8.77409 -6.84219 -0.25770 0.27129 0.81553 0.97147 0.99982 1.17491 1.58408 1.62968 1.97724 2.14755 2.22266 2.43313 2.53970 3.07049 3.12893 3.62242 3.76366 3.94500 4.08147 4.17702 4.21766 4.34677 4.47392 4.53797 4.57038 4.60130 4.65145 4.67450 4.77519 5.02152 5.20141 5.26390 5.39217 5.70545 6.02437 6.41135 6.58201 7.37905 7.94638 8.15735 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.029601 B = 0.004203 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.682323 B = 6660.910325 C = 7265.213326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.013 3.987 3 H 0.139 0.861 4 S 0.044 5.956 5 C 0.076 3.924 6 N -0.291 5.291 7 N -0.442 5.442 8 C 0.329 3.671 9 C -0.510 4.510 10 H 0.081 0.919 11 C 0.041 3.959 12 N -0.825 5.825 13 Si 1.146 2.854 14 H -0.302 1.302 15 H -0.270 1.270 16 H -0.291 1.291 17 N -0.513 5.513 18 C 0.091 3.909 19 C 0.203 3.797 20 N -0.309 5.309 21 N -0.104 5.104 22 N -0.093 5.093 23 N -0.285 5.285 24 C 0.055 3.945 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.285 0.715 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 -2.841 -15.174 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.157 0.843 4 S 0.270 5.730 5 C -0.299 4.299 6 N -0.134 5.134 7 N -0.291 5.291 8 C 0.083 3.917 9 C -0.551 4.551 10 H 0.099 0.901 11 C -0.179 4.179 12 N -0.450 5.450 13 Si 0.974 3.026 14 H -0.232 1.232 15 H -0.196 1.196 16 H -0.218 1.218 17 N -0.213 5.213 18 C -0.051 4.051 19 C -0.077 4.077 20 N -0.160 5.160 21 N -0.097 5.097 22 N -0.080 5.080 23 N -0.087 5.087 24 C -0.083 4.083 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.379 -2.621 -16.667 17.431 hybrid contribution 1.043 -0.582 1.786 2.148 sum 5.422 -3.203 -14.882 16.159 Atomic orbital electron populations 1.22067 0.89286 1.03881 1.04773 1.21490 1.01356 1.01539 0.87572 0.84269 1.85211 1.69374 1.26768 0.91661 1.26309 1.12064 1.03594 0.87960 1.74115 1.14242 1.04813 1.20239 1.73888 1.33296 1.27191 0.94680 1.21717 0.90807 0.83732 0.95483 1.19417 1.30696 1.16450 0.88524 0.90103 1.27853 0.94856 0.95630 0.99546 1.70672 1.35616 1.35948 1.02812 0.82221 0.75138 0.74410 0.70848 1.23156 1.19612 1.21830 1.46138 1.48039 1.22414 1.04663 1.21905 0.97075 0.87926 0.98205 1.25013 1.00242 0.89808 0.92639 1.75013 1.18105 1.12609 1.10260 1.78617 1.12794 1.16445 1.01869 1.78796 1.18563 0.92439 1.18163 1.48732 1.37908 1.11924 1.10181 1.23120 1.07396 0.69393 1.08411 0.90505 0.89297 0.91317 0.90354 0.90353 0.88498 0.89814 0.86086 0.84844 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.99 71.98 0.65 -2.84 16 2 C 0.01 0.32 2.57 29.85 0.08 0.39 16 3 H 0.14 2.94 7.20 -2.40 -0.02 2.93 16 4 S 0.04 1.31 21.09 -56.49 -1.19 0.12 16 5 C 0.08 2.99 7.77 179.18 1.39 4.39 16 6 N -0.29 -12.98 9.74 -56.17 -0.55 -13.53 16 7 N -0.44 -22.57 7.52 -55.02 -0.41 -22.98 16 8 C 0.33 16.48 7.27 133.23 0.97 17.44 16 9 C -0.51 -26.40 9.50 23.09 0.22 -26.19 16 10 H 0.08 4.10 7.46 -2.91 -0.02 4.07 16 11 C 0.04 2.14 5.52 85.29 0.47 2.61 16 12 N -0.83 -43.29 13.65 21.86 0.30 -43.00 16 13 Si 1.15 54.83 25.90 68.60 1.78 56.60 16 14 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.27 -13.18 6.76 99.48 0.67 -12.51 16 16 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 17 N -0.51 -21.58 3.26 -543.63 -1.77 -23.35 16 18 C 0.09 2.89 10.89 127.77 1.39 4.28 16 19 C 0.20 4.84 6.73 138.13 0.93 5.77 16 20 N -0.31 -9.14 12.18 -50.45 -0.61 -9.76 16 21 N -0.10 -3.10 13.43 37.01 0.50 -2.60 16 22 N -0.09 -2.30 13.29 37.02 0.49 -1.81 16 23 N -0.28 -5.46 3.75 -359.63 -1.35 -6.81 16 24 C 0.06 0.41 11.04 127.77 1.41 1.83 16 25 H 0.08 2.41 5.89 -2.39 -0.01 2.39 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.29 14.30 8.72 -92.71 -0.81 13.49 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.10 2.53 7.85 -2.39 -0.02 2.52 16 31 H 0.08 2.60 7.48 -2.39 -0.02 2.58 16 32 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.13 0.56 7.41 -2.39 -0.02 0.54 16 Total: -1.00 -69.20 307.80 5.76 -63.44 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 1.07 Total: -4.02 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 7.51 Total: 7.69 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -3.41 Total: -123.83 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 1.78 Total: 56.60 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.19 Total: 0.12 kcal Total: -69.20 5.76 -63.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322445646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.033 kcal (2) G-P(sol) polarization free energy of solvation -69.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds