Wall clock time and date at job start Tue Mar 31 2020 07:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47006 * 2 1 4 4 H 1.09001 * 109.47170 * 304.99634 * 3 2 1 5 5 S 1.81398 * 109.47367 * 64.99888 * 3 2 1 6 6 C 1.81405 * 103.00358 * 184.99846 * 5 3 2 7 7 C 1.50707 * 109.46953 * 184.99762 * 3 2 1 8 8 O 1.21282 * 120.00051 * 329.99996 * 7 3 2 9 9 N 1.34778 * 119.99829 * 150.00242 * 7 3 2 10 10 C 1.39990 * 120.00268 * 174.55231 * 9 7 3 11 11 C 1.38925 * 119.99731 * 325.28086 * 10 9 7 12 12 C 1.38001 * 119.99779 * 180.23284 * 11 10 9 13 13 C 1.38905 * 120.00081 * 359.49191 * 12 11 10 14 14 O 1.35773 * 119.99782 * 180.25752 * 13 12 11 15 15 C 1.34818 * 117.00000 * 185.84779 * 14 13 12 16 16 H 1.08000 * 120.00049 * 5.35491 * 15 14 13 17 17 C 1.38638 * 119.99928 * 185.35165 * 15 14 13 18 18 N 1.31570 * 120.00313 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99544 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47075 * 90.00419 * 19 17 15 21 21 H 1.48504 * 109.46866 * 209.99918 * 19 17 15 22 22 H 1.48497 * 109.47358 * 329.99634 * 19 17 15 23 23 C 1.38908 * 120.00309 * 0.50273 * 13 12 11 24 24 C 1.38007 * 120.00086 * 359.75279 * 23 13 12 25 25 H 1.08995 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47498 * 300.00488 * 1 2 3 27 27 H 1.09003 * 109.46805 * 59.99864 * 1 2 3 28 28 H 1.08999 * 109.47021 * 239.99744 * 2 1 3 29 29 H 1.09002 * 109.46858 * 119.99584 * 2 1 3 30 30 H 1.09003 * 109.46962 * 59.99774 * 6 5 3 31 31 H 1.08995 * 109.47408 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47196 * 300.00384 * 6 5 3 33 33 H 0.97004 * 119.99817 * 354.54216 * 9 7 3 34 34 H 1.08003 * 119.99755 * 359.95385 * 11 10 9 35 35 H 1.07998 * 119.99722 * 179.74731 * 12 11 10 36 36 H 0.96993 * 120.00440 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.99866 * 179.72778 * 23 13 12 38 38 H 1.08004 * 119.99710 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 16 1.5600 2.2535 1.5500 6 6 2.1077 3.9650 1.3016 7 6 3.5419 1.4443 -0.1238 8 8 4.1883 0.5205 0.3232 9 7 4.1668 2.4724 -0.7311 10 6 5.5654 2.5312 -0.7461 11 6 6.2918 2.0655 0.3427 12 6 7.6704 2.1279 0.3299 13 6 8.3320 2.6466 -0.7758 14 8 9.6884 2.7031 -0.7904 15 6 10.2638 3.3267 -1.8381 16 1 9.6499 3.8281 -2.5717 17 6 11.6435 3.3245 -1.9737 18 7 12.3914 2.7133 -1.0804 19 14 12.4407 4.1892 -3.4250 20 1 12.7273 5.6007 -3.0637 21 1 13.7089 3.5008 -3.7757 22 1 11.5197 4.1535 -4.5894 23 6 7.6057 3.1121 -1.8646 24 6 6.2269 3.0547 -1.8498 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6005 4.3865 0.4337 31 1 1.8671 4.5554 2.1857 32 1 3.1850 3.9814 1.1363 33 1 3.6474 3.1717 -1.1580 34 1 5.7775 1.6588 1.2009 35 1 8.2349 1.7696 1.1780 36 1 13.3567 2.7113 -1.1754 37 1 8.1200 3.5194 -2.7224 38 1 5.6622 3.4171 -2.6961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322819328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:22 Heat of formation + Delta-G solvation = -41.219922 kcal Electronic energy + Delta-G solvation = -20845.562941 eV Core-core repulsion = 17587.083275 eV Total energy + Delta-G solvation = -3258.479666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.28218 -38.75777 -36.66764 -34.68336 -34.08443 -32.23032 -30.27521 -29.65638 -28.62714 -27.20455 -25.35005 -22.76942 -22.20225 -21.30259 -20.28011 -18.13552 -17.65140 -17.24407 -16.87909 -16.29308 -15.36149 -14.99695 -14.60939 -14.42211 -14.28792 -13.96416 -13.68535 -13.57170 -13.44076 -13.16028 -12.86167 -12.61161 -12.44568 -12.06362 -11.84729 -11.62124 -11.60240 -11.47735 -11.26746 -11.09754 -10.71000 -10.48627 -10.38901 -9.85465 -9.71252 -9.30045 -8.75624 -8.26435 -7.95248 -6.98845 -6.47748 -4.05916 1.10486 1.93191 2.13660 2.25100 2.93561 3.09142 3.11132 3.15800 3.17131 3.93983 4.29677 4.42865 4.53225 4.76923 4.84496 4.91070 5.06329 5.07902 5.16737 5.26983 5.44915 5.47611 5.50164 5.71192 5.73198 5.86097 6.03794 6.08250 6.16162 6.20941 6.74149 6.79177 6.91385 7.09812 7.17258 7.35910 7.58478 7.72060 7.96330 8.23461 8.97361 9.67344 10.70134 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.002921 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.510755 B = 9583.053541 C = 9627.827082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.079 4.079 4 H 0.104 0.896 5 S -0.209 6.209 6 C -0.139 4.139 7 C 0.508 3.492 8 O -0.507 6.507 9 N -0.660 5.660 10 C 0.033 3.967 11 C -0.064 4.064 12 C -0.177 4.177 13 C 0.148 3.852 14 O -0.175 6.175 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.219 4.219 24 C -0.088 4.088 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.398 0.602 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.955 1.737 -0.030 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 C -0.210 4.210 4 H 0.122 0.878 5 S 0.018 5.982 6 C -0.307 4.307 7 C 0.291 3.709 8 O -0.381 6.381 9 N -0.306 5.306 10 C -0.059 4.059 11 C -0.084 4.084 12 C -0.197 4.197 13 C 0.094 3.906 14 O -0.078 6.078 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.239 4.239 24 C -0.108 4.108 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.149 0.851 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.597 0.513 1.408 21.649 hybrid contribution 0.742 1.457 -2.159 2.708 sum -20.855 1.969 -0.751 20.961 Atomic orbital electron populations 1.21850 0.94469 1.02187 1.02592 1.21203 0.96296 0.91161 1.04449 1.23448 0.95280 1.02800 0.99520 0.87828 1.86987 1.78610 1.08103 1.24542 1.23603 1.05228 0.95498 1.06382 1.20398 0.89175 0.82289 0.79011 1.90736 1.66521 1.34327 1.46535 1.43316 1.05824 1.24883 1.56552 1.17206 0.80953 1.11081 0.96678 1.20573 0.92848 0.98372 0.96657 1.20125 0.93097 1.07916 0.98583 1.19418 0.85083 0.92989 0.93091 1.84006 1.13279 1.66712 1.43801 1.21313 0.90412 1.31764 1.03356 0.89082 1.25301 0.95274 0.97280 0.98676 1.70041 1.05728 1.39950 1.33796 0.85710 0.78870 0.78962 0.79867 1.19861 1.20228 1.19204 1.20980 0.93130 1.09232 1.00594 1.20469 0.94101 1.00929 0.95345 0.92094 0.91433 0.92618 0.90183 0.89735 0.90208 0.87610 0.89701 0.76737 0.85885 0.86043 0.91942 0.85065 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.74 37.16 0.36 -0.78 16 2 C -0.09 -0.90 4.91 -26.73 -0.13 -1.03 16 3 C -0.08 -0.79 2.62 -27.88 -0.07 -0.87 16 4 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 5 S -0.21 -2.11 20.59 -107.50 -2.21 -4.33 16 6 C -0.14 -1.10 10.54 101.05 1.07 -0.04 16 7 C 0.51 7.05 6.28 -10.98 -0.07 6.99 16 8 O -0.51 -9.20 14.07 5.56 0.08 -9.12 16 9 N -0.66 -8.72 4.69 -9.82 -0.05 -8.76 16 10 C 0.03 0.57 6.25 -83.63 -0.52 0.05 16 11 C -0.06 -1.26 8.64 -39.41 -0.34 -1.60 16 12 C -0.18 -3.89 9.98 -39.42 -0.39 -4.28 16 13 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 14 O -0.17 -4.97 9.76 0.01 0.00 -4.97 16 15 C -0.39 -10.83 9.44 30.88 0.29 -10.54 16 16 H 0.09 2.30 5.28 -52.49 -0.28 2.03 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 19 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.22 -4.65 9.13 -39.42 -0.36 -5.01 16 24 C -0.09 -1.56 9.96 -39.42 -0.39 -1.95 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.53 7.13 -51.93 -0.37 0.16 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.97 8.02 -51.93 -0.42 0.55 16 30 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.80 7.36 -51.92 -0.38 0.41 16 33 H 0.40 3.80 8.82 -40.82 -0.36 3.44 16 34 H 0.12 2.37 6.52 -52.48 -0.34 2.03 16 35 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.13 2.75 5.70 -52.49 -0.30 2.45 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -32.41 335.41 -7.28 -39.68 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.96 Total: 6.40 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.92 Total: -14.78 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.71 Total: -33.17 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.08 Total: -14.10 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.21 Total: -4.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.41 -7.28 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322819328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.538 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds