Wall clock time and date at job start Tue Mar 31 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99887 * 2 1 4 4 C 1.53000 * 109.47487 * 59.99753 * 3 2 1 5 5 C 1.53000 * 109.47237 * 299.99825 * 3 2 1 6 6 C 1.50704 * 109.47221 * 179.97438 * 3 2 1 7 7 O 1.21286 * 119.99589 * 359.97438 * 6 3 2 8 8 N 1.34778 * 120.00322 * 179.97438 * 6 3 2 9 9 C 1.39990 * 120.00417 * 175.49145 * 8 6 3 10 10 C 1.38911 * 120.00354 * 215.12207 * 9 8 6 11 11 C 1.37999 * 120.00077 * 180.02562 * 10 9 8 12 12 C 1.38916 * 120.00154 * 0.02738 * 11 10 9 13 13 O 1.35776 * 120.00016 * 179.97438 * 12 11 10 14 14 C 1.34811 * 117.00161 * 5.34523 * 13 12 11 15 15 H 1.08001 * 119.99951 * 354.95944 * 14 13 12 16 16 C 1.38631 * 120.00375 * 174.96691 * 14 13 12 17 17 N 1.31571 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00383 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47344 * 59.99132 * 18 16 14 20 20 H 1.48500 * 109.47650 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46981 * 299.99294 * 18 16 14 22 22 C 1.38906 * 119.99681 * 0.24513 * 12 11 10 23 23 C 1.38003 * 120.00385 * 359.45668 * 22 12 11 24 24 H 1.09003 * 109.47130 * 300.00591 * 1 2 3 25 25 H 1.08994 * 109.46839 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47581 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47567 * 300.00238 * 4 3 2 29 29 H 1.09009 * 109.46859 * 60.00270 * 4 3 2 30 30 H 1.08997 * 109.47299 * 299.99997 * 5 3 2 31 31 H 1.09000 * 109.47343 * 59.99768 * 5 3 2 32 32 H 1.09007 * 109.47421 * 180.02562 * 5 3 2 33 33 H 0.97003 * 119.99829 * 355.49247 * 8 6 3 34 34 H 1.08004 * 120.00588 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.00534 * 179.97438 * 11 10 9 36 36 H 0.96997 * 120.00235 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.99394 * 179.70618 * 22 12 11 38 38 H 1.08004 * 119.99758 * 180.26959 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6340 2.4268 1.2492 5 6 1.6340 2.4267 -1.2492 6 6 3.7195 1.9374 0.0006 7 8 4.4404 0.9620 0.0015 8 7 4.2576 3.1731 0.0002 9 6 5.6450 3.3325 0.0961 10 6 6.1738 4.4107 0.7943 11 6 7.5415 4.5681 0.8884 12 6 8.3897 3.6486 0.2843 13 8 9.7354 3.8037 0.3764 14 6 10.1839 4.8056 1.1590 15 1 9.4836 5.4912 1.6128 16 6 11.5439 4.9559 1.3813 17 7 12.3971 4.1205 0.8289 18 14 12.1654 6.3446 2.4651 19 1 11.5925 6.2032 3.8279 20 1 13.6472 6.2866 2.5431 21 1 11.7504 7.6477 1.8865 22 6 7.8609 2.5735 -0.4187 23 6 6.4932 2.4127 -0.5076 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8795 3.4887 1.2494 28 1 0.5510 2.3039 1.2492 29 1 2.0530 1.9572 2.1392 30 1 2.0530 1.9571 -2.1392 31 1 0.5510 2.3038 -1.2493 32 1 1.8796 3.4887 -1.2495 33 1 3.6834 3.9521 -0.0665 34 1 5.5145 5.1260 1.2637 35 1 7.9527 5.4066 1.4309 36 1 13.3488 4.2258 0.9841 37 1 8.5204 1.8613 -0.8923 38 1 6.0822 1.5743 -1.0505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328627947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:29 Heat of formation + Delta-G solvation = -32.310272 kcal Electronic energy + Delta-G solvation = -20899.256566 eV Core-core repulsion = 17641.163252 eV Total energy + Delta-G solvation = -3258.093314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38004 -38.75018 -36.58987 -35.31512 -33.74055 -32.16445 -30.22868 -29.17256 -27.86970 -27.86208 -25.39902 -23.89729 -22.26873 -21.45752 -19.94154 -18.10846 -17.89332 -17.08781 -16.35329 -15.92131 -15.24123 -14.85141 -14.58301 -14.52161 -14.28006 -14.08870 -13.66381 -13.59209 -13.23526 -13.13827 -12.84077 -12.57749 -12.51395 -12.40338 -12.00377 -11.85500 -11.72086 -11.57121 -11.48395 -11.02018 -10.74387 -10.47706 -9.96874 -9.74384 -9.60712 -9.24051 -8.71602 -8.21784 -7.84461 -6.95663 -6.44666 -4.03007 1.27442 2.05260 2.19689 2.29487 2.75202 3.12689 3.13702 3.16915 3.19911 3.96644 4.31834 4.40584 4.51258 4.61467 4.79385 4.86500 5.05906 5.09104 5.17670 5.22014 5.25180 5.32734 5.40884 5.53581 5.64631 5.73500 5.77566 6.12043 6.19898 6.25702 6.79800 6.82919 6.95456 7.14297 7.20738 7.39570 7.63550 7.76532 7.99465 8.27607 9.00320 9.70576 10.73167 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.042203 B = 0.002880 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.307714 B = 9721.096185 C =10017.556374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.176 6.176 3 C -0.065 4.065 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.530 3.470 7 O -0.503 6.503 8 N -0.652 5.652 9 C 0.033 3.967 10 C -0.088 4.088 11 C -0.220 4.220 12 C 0.148 3.852 13 O -0.175 6.175 14 C -0.393 4.393 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.179 4.179 23 C -0.066 4.066 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.271 0.729 37 H 0.121 0.879 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.777 -0.470 -1.289 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.050 5.950 3 C -0.178 4.178 4 C -0.201 4.201 5 C -0.202 4.202 6 C 0.314 3.686 7 O -0.377 6.377 8 N -0.298 5.298 9 C -0.060 4.060 10 C -0.108 4.108 11 C -0.240 4.240 12 C 0.094 3.906 13 O -0.078 6.078 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.199 4.199 23 C -0.086 4.086 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.139 -2.245 -1.383 22.295 hybrid contribution -0.936 2.236 0.613 2.501 sum -23.075 -0.009 -0.770 23.088 Atomic orbital electron populations 1.23614 0.96425 1.06494 1.04763 1.87534 1.04006 1.05680 1.97751 1.23012 0.96436 0.97774 1.00600 1.22120 1.01207 1.01031 0.95789 1.22133 1.01347 1.00977 0.95778 1.19589 0.88222 0.83676 0.77149 1.90747 1.61227 1.38388 1.47336 1.43035 1.06345 1.07559 1.72812 1.17228 0.81045 1.00784 1.06908 1.20460 0.94921 0.97373 0.98048 1.20965 0.92417 1.02868 1.07781 1.19423 0.85027 0.92788 0.93330 1.83991 1.15193 1.49149 1.59513 1.21267 0.91907 1.06532 1.27187 0.89115 1.25290 0.94833 0.98638 0.97758 1.70035 1.02835 1.35487 1.41259 0.85782 0.78111 0.79847 0.79685 1.19503 1.20271 1.19515 1.20156 0.94236 0.99189 1.06272 1.20744 0.91906 0.98265 0.97675 0.90523 0.90530 0.87932 0.91085 0.91310 0.90584 0.90570 0.91262 0.91109 0.76458 0.87189 0.85081 0.91926 0.86072 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.87 101.05 1.00 0.02 16 2 S -0.18 -2.03 20.43 -107.50 -2.20 -4.23 16 3 C -0.06 -0.66 0.80 -91.77 -0.07 -0.74 16 4 C -0.14 -1.13 8.22 37.16 0.31 -0.82 16 5 C -0.14 -1.09 8.21 37.16 0.31 -0.78 16 6 C 0.53 7.64 6.34 -10.98 -0.07 7.57 16 7 O -0.50 -9.49 13.30 5.55 0.07 -9.42 16 8 N -0.65 -8.82 5.12 -9.82 -0.05 -8.87 16 9 C 0.03 0.58 6.30 -83.63 -0.53 0.05 16 10 C -0.09 -1.56 9.96 -39.42 -0.39 -1.95 16 11 C -0.22 -4.71 9.16 -39.42 -0.36 -5.07 16 12 C 0.15 3.62 6.65 -39.08 -0.26 3.36 16 13 O -0.18 -5.03 9.75 0.02 0.00 -5.03 16 14 C -0.39 -10.94 9.48 30.88 0.29 -10.64 16 15 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 18 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.18 -3.98 9.98 -39.42 -0.39 -4.37 16 23 C -0.07 -1.32 8.69 -39.42 -0.34 -1.66 16 24 H 0.08 0.43 7.00 -51.92 -0.36 0.07 16 25 H 0.08 0.42 6.99 -51.93 -0.36 0.06 16 26 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 28 H 0.07 0.41 6.68 -51.93 -0.35 0.06 16 29 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.40 6.68 -51.93 -0.35 0.05 16 32 H 0.07 0.43 7.47 -51.92 -0.39 0.04 16 33 H 0.40 3.90 7.68 -40.82 -0.31 3.58 16 34 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.13 2.75 5.63 -52.48 -0.30 2.46 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.12 2.63 8.06 -52.48 -0.42 2.20 16 38 H 0.13 2.55 6.23 -52.48 -0.33 2.22 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -33.42 328.39 -6.77 -40.18 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.66 Total: 5.67 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.62 Total: -14.05 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.71 Total: -33.47 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.07 Total: -14.44 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.20 Total: -4.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.42 -6.77 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328627947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.875 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds