Wall clock time and date at job start Tue Mar 31 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99887 * 2 1 4 4 C 1.53000 * 109.47487 * 59.99753 * 3 2 1 5 5 C 1.53000 * 109.47237 * 299.99825 * 3 2 1 6 6 C 1.50704 * 109.47221 * 179.97438 * 3 2 1 7 7 O 1.21286 * 119.99589 * 359.97438 * 6 3 2 8 8 N 1.34778 * 120.00322 * 179.97438 * 6 3 2 9 9 C 1.39990 * 120.00417 * 175.49145 * 8 6 3 10 10 C 1.38911 * 120.00354 * 215.12207 * 9 8 6 11 11 C 1.37999 * 120.00077 * 180.02562 * 10 9 8 12 12 C 1.38916 * 120.00154 * 0.02738 * 11 10 9 13 13 O 1.35776 * 120.00016 * 179.97438 * 12 11 10 14 14 C 1.34811 * 117.00161 * 5.34523 * 13 12 11 15 15 H 1.08001 * 119.99951 * 354.95944 * 14 13 12 16 16 C 1.38631 * 120.00375 * 174.96691 * 14 13 12 17 17 N 1.31571 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00383 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47344 * 59.99132 * 18 16 14 20 20 H 1.48500 * 109.47650 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46981 * 299.99294 * 18 16 14 22 22 C 1.38906 * 119.99681 * 0.24513 * 12 11 10 23 23 C 1.38003 * 120.00385 * 359.45668 * 22 12 11 24 24 H 1.09003 * 109.47130 * 300.00591 * 1 2 3 25 25 H 1.08994 * 109.46839 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47581 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47567 * 300.00238 * 4 3 2 29 29 H 1.09009 * 109.46859 * 60.00270 * 4 3 2 30 30 H 1.08997 * 109.47299 * 299.99997 * 5 3 2 31 31 H 1.09000 * 109.47343 * 59.99768 * 5 3 2 32 32 H 1.09007 * 109.47421 * 180.02562 * 5 3 2 33 33 H 0.97003 * 119.99829 * 355.49247 * 8 6 3 34 34 H 1.08004 * 120.00588 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.00534 * 179.97438 * 11 10 9 36 36 H 0.96997 * 120.00235 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.99394 * 179.70618 * 22 12 11 38 38 H 1.08004 * 119.99758 * 180.26959 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6340 2.4268 1.2492 5 6 1.6340 2.4267 -1.2492 6 6 3.7195 1.9374 0.0006 7 8 4.4404 0.9620 0.0015 8 7 4.2576 3.1731 0.0002 9 6 5.6450 3.3325 0.0961 10 6 6.1738 4.4107 0.7943 11 6 7.5415 4.5681 0.8884 12 6 8.3897 3.6486 0.2843 13 8 9.7354 3.8037 0.3764 14 6 10.1839 4.8056 1.1590 15 1 9.4836 5.4912 1.6128 16 6 11.5439 4.9559 1.3813 17 7 12.3971 4.1205 0.8289 18 14 12.1654 6.3446 2.4651 19 1 11.5925 6.2032 3.8279 20 1 13.6472 6.2866 2.5431 21 1 11.7504 7.6477 1.8865 22 6 7.8609 2.5735 -0.4187 23 6 6.4932 2.4127 -0.5076 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8795 3.4887 1.2494 28 1 0.5510 2.3039 1.2492 29 1 2.0530 1.9572 2.1392 30 1 2.0530 1.9571 -2.1392 31 1 0.5510 2.3038 -1.2493 32 1 1.8796 3.4887 -1.2495 33 1 3.6834 3.9521 -0.0665 34 1 5.5145 5.1260 1.2637 35 1 7.9527 5.4066 1.4309 36 1 13.3488 4.2258 0.9841 37 1 8.5204 1.8613 -0.8923 38 1 6.0822 1.5743 -1.0505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328627947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:29 Heat of formation + Delta-G solvation = -54.754444 kcal Electronic energy + Delta-G solvation = -20900.229819 eV Core-core repulsion = 17641.163252 eV Total energy + Delta-G solvation = -3259.066567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69292 -40.45643 -38.25015 -36.28753 -35.13086 -34.10446 -31.89570 -29.88298 -29.30574 -28.44702 -27.34510 -24.95043 -23.91245 -22.92164 -21.23419 -19.84334 -19.21786 -18.76686 -17.70834 -16.99520 -16.47476 -16.36611 -16.01049 -15.62912 -15.52047 -15.31041 -15.17757 -14.66347 -14.55790 -14.29840 -13.91399 -13.76704 -13.59172 -13.38805 -13.22162 -13.16230 -12.96034 -12.69512 -12.61006 -12.45598 -12.38505 -12.14809 -11.38526 -11.11805 -10.81719 -10.67607 -10.54113 -9.86708 -8.71609 -8.63924 -8.45332 -6.13282 0.44484 0.51263 0.55369 1.37008 1.45147 1.53734 1.54802 1.62746 2.04864 2.19763 2.81271 3.14575 3.46921 3.50870 3.71142 3.74964 4.04376 4.11690 4.34553 4.39378 4.47634 4.56050 4.57900 4.62004 4.65911 4.71322 4.72480 4.89796 5.05484 5.12808 5.16212 5.17595 5.27397 5.44155 5.53264 5.66009 6.02174 6.13352 6.42543 6.98428 7.12294 7.78997 8.77797 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.042203 B = 0.002880 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.307714 B = 9721.096185 C =10017.556374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.270 6.270 3 C -0.044 4.044 4 C -0.141 4.141 5 C -0.142 4.142 6 C 0.525 3.475 7 O -0.552 6.552 8 N -0.638 5.638 9 C 0.061 3.939 10 C -0.074 4.074 11 C -0.220 4.220 12 C 0.110 3.890 13 O -0.231 6.231 14 C -0.414 4.414 15 H 0.108 0.892 16 C -0.025 4.025 17 N -0.923 5.923 18 Si 1.021 2.979 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.253 1.253 22 C -0.192 4.192 23 C -0.074 4.074 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.425 0.575 34 H 0.163 0.837 35 H 0.135 0.865 36 H 0.272 0.728 37 H 0.109 0.891 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.252 2.052 -0.257 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.044 6.044 3 C -0.157 4.157 4 C -0.200 4.200 5 C -0.201 4.201 6 C 0.311 3.689 7 O -0.428 6.428 8 N -0.286 5.286 9 C -0.033 4.033 10 C -0.094 4.094 11 C -0.240 4.240 12 C 0.059 3.941 13 O -0.138 6.138 14 C -0.490 4.490 15 H 0.125 0.875 16 C -0.223 4.223 17 N -0.561 5.561 18 Si 0.840 3.160 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.177 1.177 22 C -0.212 4.212 23 C -0.094 4.094 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.265 0.735 34 H 0.180 0.820 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.723 0.298 -0.365 26.727 hybrid contribution 0.054 1.286 0.201 1.302 sum -26.669 1.583 -0.165 26.717 Atomic orbital electron populations 1.23634 0.91219 1.07579 1.06443 1.87888 1.09823 1.08657 1.98036 1.22919 0.92860 0.96558 1.03338 1.22177 1.02667 1.01749 0.93418 1.22189 1.02774 1.01695 0.93418 1.20471 0.90238 0.82857 0.75321 1.90743 1.62947 1.40064 1.49084 1.42934 1.04635 1.08706 1.72316 1.17346 0.83039 0.99065 1.03834 1.20847 0.93944 0.97813 0.96812 1.21147 0.93755 1.02047 1.07020 1.19864 0.84476 0.94537 0.95203 1.83961 1.17427 1.50681 1.61691 1.21856 0.92821 1.06897 1.27420 0.87466 1.26658 0.94718 1.01655 0.99238 1.70202 1.03195 1.38535 1.44205 0.84615 0.77343 0.76324 0.77729 1.18087 1.19984 1.17741 1.20248 0.95357 0.99000 1.06601 1.20821 0.91195 0.99092 0.98256 0.88796 0.88703 0.87235 0.88796 0.88601 0.92433 0.92157 0.88582 0.88838 0.73515 0.81983 0.84759 0.91876 0.87246 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.87 113.37 1.12 -0.09 16 2 S -0.27 -5.88 20.43 -56.49 -1.15 -7.03 16 3 C -0.04 -0.76 0.80 -11.54 -0.01 -0.77 16 4 C -0.14 -1.61 8.22 71.98 0.59 -1.02 16 5 C -0.14 -1.55 8.21 71.98 0.59 -0.96 16 6 C 0.52 14.05 6.34 87.66 0.56 14.60 16 7 O -0.55 -20.78 13.30 -3.05 -0.04 -20.82 16 8 N -0.64 -14.99 5.12 -303.38 -1.55 -16.55 16 9 C 0.06 2.01 6.30 38.16 0.24 2.25 16 10 C -0.07 -2.40 9.96 22.37 0.22 -2.17 16 11 C -0.22 -9.23 9.16 22.38 0.20 -9.03 16 12 C 0.11 5.59 6.65 22.59 0.15 5.74 16 13 O -0.23 -14.10 9.75 -22.83 -0.22 -14.32 16 14 C -0.41 -23.96 9.48 67.91 0.64 -23.32 16 15 H 0.11 5.53 5.20 -2.91 -0.02 5.52 16 16 C -0.03 -1.45 5.49 84.83 0.47 -0.98 16 17 N -0.92 -57.37 13.67 21.61 0.30 -57.08 16 18 Si 1.02 42.44 29.55 68.60 2.03 44.47 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 C -0.19 -9.00 9.98 22.37 0.22 -8.78 16 23 C -0.07 -2.96 8.69 22.38 0.19 -2.77 16 24 H 0.09 0.64 7.00 -2.39 -0.02 0.62 16 25 H 0.09 0.63 6.99 -2.39 -0.02 0.61 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 0.66 7.67 -2.39 -0.02 0.64 16 28 H 0.10 0.62 6.68 -2.39 -0.02 0.60 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.58 6.68 -2.39 -0.02 0.56 16 32 H 0.09 0.62 7.47 -2.38 -0.02 0.60 16 33 H 0.43 5.96 7.68 -92.71 -0.71 5.25 16 34 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.13 5.51 5.63 -2.91 -0.02 5.49 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 38 H 0.13 5.20 6.23 -2.91 -0.02 5.18 16 Total: -1.00 -80.95 328.39 4.93 -76.02 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.38 Total: 22.60 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 5.19 Total: -27.29 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.26 Total: -73.62 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.26 Total: -35.14 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -1.15 Total: -7.03 kcal Total: -80.95 4.93 -76.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328627947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.269 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds