Wall clock time and date at job start Tue Mar 31 2020 07:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 N 1.46498 * 109.46599 * 179.97438 * 15 13 12 17 17 C 1.34776 * 119.99941 * 179.97438 * 16 15 13 18 18 O 1.21571 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.47731 * 120.00339 * 179.97438 * 17 16 15 20 20 C 1.39654 * 120.11247 * 359.72666 * 19 17 16 21 21 C 1.37839 * 119.87230 * 179.74307 * 20 19 17 22 22 C 1.38654 * 120.12206 * 0.50783 * 21 20 19 23 23 F 1.35096 * 119.88336 * 179.74322 * 22 21 20 24 24 C 1.38656 * 120.23867 * 359.76954 * 22 21 20 25 25 C 1.37840 * 120.11717 * 359.97418 * 24 22 21 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 31 31 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 32 32 H 0.97006 * 120.00345 * 359.97438 * 16 15 13 33 33 H 1.07996 * 120.06340 * 359.97438 * 20 19 17 34 34 H 1.07996 * 119.93665 * 180.25504 * 21 20 19 35 35 H 1.07994 * 119.94465 * 179.97438 * 24 22 21 36 36 H 1.07999 * 120.05536 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 7 2.8581 0.4441 4.5906 17 6 3.2949 0.0996 5.8182 18 8 3.5742 -1.0584 6.0612 19 6 3.4354 1.1292 6.8683 20 6 3.1217 2.4612 6.5898 21 6 3.2496 3.4170 7.5748 22 6 3.6987 3.0597 8.8370 23 9 3.8272 4.0012 9.7972 24 6 4.0170 1.7395 9.1170 25 6 3.8878 0.7749 8.1410 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.0104 -1.3370 3.8775 31 1 3.6884 -1.0397 3.3633 32 1 2.6356 1.3682 4.3967 33 1 2.7760 2.7414 5.6058 34 1 3.0033 4.4467 7.3618 35 1 4.3668 1.4666 10.1016 36 1 4.1364 -0.2530 8.3601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343464442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:41 Heat of formation + Delta-G solvation = -144.831988 kcal Electronic energy + Delta-G solvation = -22255.960315 eV Core-core repulsion = 18426.774516 eV Total energy + Delta-G solvation = -3829.185798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.34647 -40.56250 -39.65890 -38.33089 -36.14683 -34.58985 -33.37189 -31.66431 -31.31047 -29.84946 -27.92577 -25.40129 -24.02001 -23.35877 -21.90067 -20.75038 -19.96461 -18.71058 -17.86174 -17.07987 -16.66475 -16.63418 -16.09322 -15.95147 -15.57560 -15.54134 -15.00300 -14.87309 -14.49556 -14.10293 -13.71849 -13.54599 -13.16789 -13.02429 -12.87953 -12.48864 -12.18078 -11.89847 -11.46177 -11.31641 -11.14064 -10.95209 -10.46531 -10.36716 -10.27371 -9.94340 -9.69814 -9.60999 -9.40540 -9.10842 -9.01925 -8.57338 -6.26238 -4.33554 0.29659 0.78914 2.45862 2.67145 2.69964 3.20685 3.26582 3.30610 3.39250 3.59331 3.75176 4.24971 4.27133 4.39676 4.42649 4.77213 4.86835 5.07159 5.32031 5.34795 5.40167 5.45103 5.47873 5.63434 5.72601 5.84993 6.09536 6.35097 6.51319 6.78273 6.78703 7.00108 7.26767 7.48567 7.61354 7.79722 7.94141 8.02895 8.41878 8.76062 9.32218 10.81169 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.035400 B = 0.002539 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.775298 B =11024.022816 C =11453.893890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.283 1.283 12 O -0.348 6.348 13 C 0.450 3.550 14 O -0.522 6.522 15 C 0.123 3.877 16 N -0.714 5.714 17 C 0.563 3.437 18 O -0.535 6.535 19 C -0.143 4.143 20 C -0.054 4.054 21 C -0.160 4.160 22 C 0.123 3.877 23 F -0.135 7.135 24 C -0.163 4.163 25 C -0.029 4.029 26 H 0.038 0.962 27 H 0.016 0.984 28 H 0.101 0.899 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.412 0.588 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 3.220 20.121 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.209 1.209 12 O -0.263 6.263 13 C 0.293 3.707 14 O -0.412 6.412 15 C -0.001 4.001 16 N -0.370 5.370 17 C 0.351 3.649 18 O -0.413 6.413 19 C -0.146 4.146 20 C -0.073 4.073 21 C -0.179 4.179 22 C 0.103 3.897 23 F -0.114 7.114 24 C -0.182 4.182 25 C -0.048 4.048 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.155 2.877 20.059 20.686 hybrid contribution 0.066 0.460 -0.853 0.971 sum 4.221 3.337 19.206 19.945 Atomic orbital electron populations 1.22177 0.97328 1.00312 1.01517 1.20739 0.91532 0.93952 0.77398 0.93370 1.21019 1.32713 1.13652 0.88753 0.91149 1.24895 0.94831 0.95100 0.99129 1.69891 1.35888 1.22560 1.24323 0.86242 0.78556 0.79929 0.81245 1.20356 1.19517 1.20906 1.86492 1.75319 1.43418 1.21104 1.23108 0.75085 0.86021 0.86501 1.90587 1.49268 1.16842 1.84539 1.20693 1.04403 0.90897 0.84141 1.45675 1.67577 1.13074 1.10637 1.18044 0.77119 0.88092 0.81672 1.90802 1.50003 1.19413 1.81084 1.19962 1.05908 0.93607 0.95164 1.21310 0.95145 0.91374 0.99451 1.21123 1.03371 1.01536 0.91827 1.18000 0.99268 0.86239 0.86172 1.91527 1.93268 1.64086 1.62497 1.21149 1.04385 0.91169 1.01488 1.21148 0.92936 1.00316 0.90415 0.94251 0.96481 0.88084 0.92304 0.87195 0.87115 0.74936 0.84075 0.83834 0.83906 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.33 37.16 0.35 -3.44 16 2 C 0.22 5.55 2.56 -27.89 -0.07 5.48 16 3 H 0.05 1.36 7.16 -51.92 -0.37 0.99 16 4 C -0.52 -14.26 8.90 -34.44 -0.31 -14.57 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 O -0.35 -7.77 9.86 -39.27 -0.39 -8.16 16 13 C 0.45 8.48 8.00 36.01 0.29 8.77 16 14 O -0.52 -10.79 14.89 -18.75 -0.28 -11.07 16 15 C 0.12 1.75 6.27 -5.19 -0.03 1.72 16 16 N -0.71 -9.10 5.48 -62.47 -0.34 -9.45 16 17 C 0.56 7.17 7.77 -12.38 -0.10 7.07 16 18 O -0.54 -8.24 16.34 5.30 0.09 -8.15 16 19 C -0.14 -1.47 5.87 -104.96 -0.62 -2.08 16 20 C -0.05 -0.47 9.54 -39.20 -0.37 -0.84 16 21 C -0.16 -1.27 10.01 -39.57 -0.40 -1.67 16 22 C 0.12 1.04 7.31 -39.27 -0.29 0.76 16 23 F -0.14 -1.23 17.26 2.25 0.04 -1.19 16 24 C -0.16 -1.27 10.01 -39.57 -0.40 -1.67 16 25 C -0.03 -0.26 9.59 -39.20 -0.38 -0.64 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 2.64 6.07 -51.93 -0.32 2.33 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.41 4.92 5.47 -40.82 -0.22 4.70 16 33 H 0.14 1.05 6.40 -52.49 -0.34 0.72 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.25 7.65 -52.49 -0.40 0.85 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -30.80 324.00 -6.53 -37.34 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.73 Total: 3.69 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.41 Total: 0.48 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.29 Total: -33.41 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.58 Total: -27.38 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.80 -6.53 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343464442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.494 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds