Wall clock time and date at job start Tue Mar 31 2020 07:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 N 1.46498 * 109.46599 * 179.97438 * 15 13 12 17 17 C 1.34776 * 119.99941 * 179.97438 * 16 15 13 18 18 O 1.21571 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.47731 * 120.00339 * 179.97438 * 17 16 15 20 20 C 1.39654 * 120.11247 * 359.72666 * 19 17 16 21 21 C 1.37839 * 119.87230 * 179.74307 * 20 19 17 22 22 C 1.38654 * 120.12206 * 0.50783 * 21 20 19 23 23 F 1.35096 * 119.88336 * 179.74322 * 22 21 20 24 24 C 1.38656 * 120.23867 * 359.76954 * 22 21 20 25 25 C 1.37840 * 120.11717 * 359.97418 * 24 22 21 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 31 31 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 32 32 H 0.97006 * 120.00345 * 359.97438 * 16 15 13 33 33 H 1.07996 * 120.06340 * 359.97438 * 20 19 17 34 34 H 1.07996 * 119.93665 * 180.25504 * 21 20 19 35 35 H 1.07994 * 119.94465 * 179.97438 * 24 22 21 36 36 H 1.07999 * 120.05536 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 7 2.8581 0.4441 4.5906 17 6 3.2949 0.0996 5.8182 18 8 3.5742 -1.0584 6.0612 19 6 3.4354 1.1292 6.8683 20 6 3.1217 2.4612 6.5898 21 6 3.2496 3.4170 7.5748 22 6 3.6987 3.0597 8.8370 23 9 3.8272 4.0012 9.7972 24 6 4.0170 1.7395 9.1170 25 6 3.8878 0.7749 8.1410 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.0104 -1.3370 3.8775 31 1 3.6884 -1.0397 3.3633 32 1 2.6356 1.3682 4.3967 33 1 2.7760 2.7414 5.6058 34 1 3.0033 4.4467 7.3618 35 1 4.3668 1.4666 10.1016 36 1 4.1364 -0.2530 8.3601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343464442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:40 Heat of formation + Delta-G solvation = -163.041195 kcal Electronic energy + Delta-G solvation = -22256.749925 eV Core-core repulsion = 18426.774516 eV Total energy + Delta-G solvation = -3829.975409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.02864 -41.74203 -41.00462 -39.19411 -37.82277 -35.77320 -35.36093 -32.43261 -32.09919 -31.68803 -29.14801 -27.45297 -24.93196 -24.09045 -23.49513 -21.72520 -21.60830 -19.75322 -18.79502 -18.66600 -18.18154 -17.70638 -17.39679 -17.03597 -16.71386 -16.59115 -16.35069 -16.13652 -15.69855 -15.03402 -14.72148 -14.54794 -14.47416 -14.23560 -13.94452 -13.78999 -13.70782 -13.25851 -13.14471 -12.99894 -12.83908 -12.38888 -12.17116 -12.09707 -11.65534 -11.54449 -11.31772 -11.01399 -10.60946 -10.45738 -10.24363 -9.85299 -8.29865 -6.46183 -0.44445 0.15374 1.14894 1.39489 1.44363 1.47824 1.57970 1.59709 2.22687 2.42663 2.62611 3.01499 3.08708 3.49486 3.62426 3.76735 3.82214 4.14070 4.20362 4.21009 4.30426 4.51669 4.71189 4.77829 4.81262 4.85797 4.97764 4.99230 5.07021 5.15099 5.17756 5.47854 5.61761 5.70146 5.87992 6.03404 6.26681 6.56117 6.81568 6.95333 7.25065 8.77568 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.035400 B = 0.002539 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.775298 B =11024.022816 C =11453.893890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.015 0.985 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.981 3.019 9 H -0.272 1.272 10 H -0.264 1.264 11 H -0.276 1.276 12 O -0.357 6.357 13 C 0.449 3.551 14 O -0.541 6.541 15 C 0.136 3.864 16 N -0.712 5.712 17 C 0.567 3.433 18 O -0.565 6.565 19 C -0.159 4.159 20 C -0.053 4.053 21 C -0.159 4.159 22 C 0.118 3.882 23 F -0.138 7.138 24 C -0.157 4.157 25 C -0.032 4.032 26 H 0.045 0.955 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.271 0.729 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.416 0.584 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 2.988 20.845 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.033 0.967 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.804 3.196 9 H -0.198 1.198 10 H -0.188 1.188 11 H -0.201 1.201 12 O -0.272 6.272 13 C 0.294 3.706 14 O -0.432 6.432 15 C 0.012 3.988 16 N -0.368 5.368 17 C 0.357 3.643 18 O -0.445 6.445 19 C -0.162 4.162 20 C -0.072 4.072 21 C -0.177 4.177 22 C 0.098 3.902 23 F -0.117 7.117 24 C -0.175 4.175 25 C -0.051 4.051 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.256 0.744 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.625 2.662 20.809 21.483 hybrid contribution -0.068 0.613 -0.967 1.147 sum 4.557 3.275 19.842 20.621 Atomic orbital electron populations 1.22002 0.96553 1.00540 1.01074 1.20424 0.92120 0.92275 0.78664 0.96732 1.21309 1.33461 1.14015 0.89936 0.91362 1.25790 0.94700 0.95677 1.02061 1.70002 1.36447 1.23614 1.25260 0.85205 0.78121 0.78954 0.77286 1.19777 1.18774 1.20136 1.86469 1.75861 1.43571 1.21313 1.23924 0.74181 0.85811 0.86727 1.90576 1.49995 1.17843 1.84818 1.20678 1.05170 0.91014 0.81965 1.45672 1.67707 1.12984 1.10462 1.18367 0.76100 0.88197 0.81686 1.90785 1.51431 1.20735 1.81522 1.19872 1.07761 0.93589 0.94978 1.21398 0.94862 0.90838 1.00099 1.21327 1.02648 1.02326 0.91405 1.18179 0.99236 0.86473 0.86302 1.91525 1.93283 1.64227 1.62630 1.21343 1.03452 0.90581 1.02155 1.21232 0.92849 1.00817 0.90199 0.93554 0.95323 0.90043 0.91962 0.85506 0.85773 0.74445 0.83197 0.81988 0.81670 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.07 9.33 71.98 0.67 -6.40 16 2 C 0.22 11.41 2.56 29.85 0.08 11.49 16 3 H 0.01 0.86 7.16 -2.38 -0.02 0.84 16 4 C -0.55 -30.20 8.90 25.60 0.23 -29.97 16 5 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -51.04 11.32 21.45 0.24 -50.80 16 8 Si 0.98 41.85 29.54 68.60 2.03 43.87 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 12 O -0.36 -15.99 9.86 -51.45 -0.51 -16.49 16 13 C 0.45 16.82 8.00 71.24 0.57 17.39 16 14 O -0.54 -22.49 14.89 21.98 0.33 -22.16 16 15 C 0.14 3.71 6.27 85.64 0.54 4.25 16 16 N -0.71 -17.46 5.48 -469.82 -2.57 -20.03 16 17 C 0.57 13.91 7.77 86.75 0.67 14.58 16 18 O -0.56 -16.93 16.34 -3.94 -0.06 -17.00 16 19 C -0.16 -3.07 5.87 -20.09 -0.12 -3.19 16 20 C -0.05 -0.85 9.54 22.52 0.21 -0.63 16 21 C -0.16 -2.23 10.01 22.27 0.22 -2.00 16 22 C 0.12 1.77 7.31 22.47 0.16 1.93 16 23 F -0.14 -2.24 17.26 44.97 0.78 -1.47 16 24 C -0.16 -2.13 10.01 22.28 0.22 -1.91 16 25 C -0.03 -0.53 9.59 22.52 0.22 -0.32 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 4.33 6.07 -2.39 -0.01 4.31 16 29 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.42 9.59 5.47 -92.70 -0.51 9.09 16 33 H 0.15 2.04 6.40 -2.91 -0.02 2.02 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.15 2.39 7.65 -2.91 -0.02 2.36 16 Total: -1.00 -65.64 324.00 4.98 -60.67 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.62 Total: 16.79 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 4.13 Total: 6.62 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -2.33 Total: -70.83 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.24 Total: -55.65 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -65.64 4.98 -60.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343464442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.375 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds