Wall clock time and date at job start Tue Mar 31 2020 07:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 N 1.46499 * 109.46750 * 180.02562 * 15 13 12 17 17 C 1.34777 * 119.99697 * 180.02562 * 16 15 13 18 18 O 1.21570 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.47727 * 119.99968 * 180.02562 * 17 16 15 20 20 C 1.39649 * 120.11547 * 359.72643 * 19 17 16 21 21 C 1.37847 * 119.87300 * 179.74337 * 20 19 17 22 22 C 1.38646 * 120.11965 * 0.50955 * 21 20 19 23 23 F 1.35103 * 119.87941 * 179.74866 * 22 21 20 24 24 C 1.38657 * 120.24303 * 359.76039 * 22 21 20 25 25 C 1.37832 * 120.11690 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 27 27 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 28 28 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 29 29 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 30 30 H 1.08999 * 109.47289 * 300.00569 * 15 13 12 31 31 H 1.08997 * 109.46869 * 60.00510 * 15 13 12 32 32 H 0.97001 * 120.00297 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.06361 * 359.97400 * 20 19 17 34 34 H 1.07997 * 119.93328 * 180.25508 * 21 20 19 35 35 H 1.07997 * 119.94097 * 179.97438 * 24 22 21 36 36 H 1.08001 * 120.06179 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 7 2.8582 0.4439 -4.5906 17 6 3.2951 0.0992 -5.8181 18 8 3.5734 -1.0589 -6.0613 19 6 3.4357 1.1288 -6.8681 20 6 3.1113 2.4589 -6.5931 21 6 3.2494 3.4165 -7.5751 22 6 3.6994 3.0592 -8.8369 23 9 3.8282 4.0008 -9.7971 24 6 4.0176 1.7390 -9.1169 25 6 3.8884 0.7744 -8.1409 26 1 -0.3634 -1.0202 -0.1233 27 1 -0.3633 0.4034 0.9452 28 1 -0.3633 0.6170 -0.8219 29 1 1.9014 -1.9131 3.4365 30 1 3.6884 -1.0401 -3.3631 31 1 2.0105 -1.3372 -3.8773 32 1 2.6358 1.3680 -4.3967 33 1 2.7563 2.7375 -5.6119 34 1 3.0027 4.4461 -7.3623 35 1 4.3673 1.4660 -10.1016 36 1 4.1361 -0.2537 -8.3601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343464443.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:43 Heat of formation + Delta-G solvation = -144.027208 kcal Electronic energy + Delta-G solvation = -22337.000413 eV Core-core repulsion = 18507.849513 eV Total energy + Delta-G solvation = -3829.150900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.38720 -40.65225 -39.82703 -38.40029 -36.33562 -34.69183 -33.37172 -31.72522 -31.37658 -30.55672 -28.11177 -25.04592 -24.06823 -23.40710 -21.84387 -20.81688 -19.96339 -18.82752 -17.98898 -17.66355 -17.02972 -16.76739 -16.20392 -16.03915 -15.81217 -15.61728 -15.06236 -14.93793 -14.24401 -14.02350 -13.68675 -13.59186 -13.27283 -13.08273 -12.98229 -12.82255 -12.56120 -12.21317 -11.76807 -11.56489 -11.50648 -10.67341 -10.34504 -10.28526 -10.27514 -9.98211 -9.85900 -9.65860 -9.48050 -9.16611 -9.10200 -8.40381 -6.73870 -4.32186 0.24546 0.74065 2.39838 2.52403 2.56812 3.27500 3.33746 3.34305 3.43375 3.50910 3.70518 4.20209 4.31770 4.33410 4.37464 4.72016 4.81687 4.97380 5.15759 5.24373 5.27839 5.38018 5.42543 5.58614 5.67508 5.79711 5.98712 6.09218 6.30179 6.33817 6.37477 6.56630 7.02788 7.17764 7.20466 7.69503 7.86876 8.13754 8.25227 8.73778 9.32955 10.67114 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.002766 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.007873 B =10120.256290 C =10783.450894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.198 3.802 3 H 0.039 0.961 4 C -0.618 4.618 5 H 0.071 0.929 6 C 0.047 3.953 7 N -0.883 5.883 8 Si 1.030 2.970 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.274 1.274 12 O -0.337 6.337 13 C 0.450 3.550 14 O -0.523 6.523 15 C 0.124 3.876 16 N -0.714 5.714 17 C 0.564 3.436 18 O -0.534 6.534 19 C -0.144 4.144 20 C -0.054 4.054 21 C -0.160 4.160 22 C 0.123 3.877 23 F -0.135 7.135 24 C -0.163 4.163 25 C -0.029 4.029 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.274 0.726 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.411 0.589 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 7.073 -23.157 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.145 3.855 3 H 0.057 0.943 4 C -0.655 4.655 5 H 0.089 0.911 6 C -0.161 4.161 7 N -0.514 5.514 8 Si 0.857 3.143 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.200 1.200 12 O -0.251 6.251 13 C 0.293 3.707 14 O -0.414 6.414 15 C -0.001 4.001 16 N -0.371 5.371 17 C 0.351 3.649 18 O -0.411 6.411 19 C -0.147 4.147 20 C -0.073 4.073 21 C -0.179 4.179 22 C 0.104 3.896 23 F -0.113 7.113 24 C -0.182 4.182 25 C -0.048 4.048 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.250 0.750 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.101 7.774 -22.094 23.516 hybrid contribution 0.125 -0.453 -1.099 1.195 sum 2.226 7.321 -23.193 24.423 Atomic orbital electron populations 1.22509 0.97818 1.01051 1.00900 1.20959 0.91062 0.93978 0.79513 0.94330 1.21848 1.42469 1.11786 0.89409 0.91116 1.25638 0.93189 1.06011 0.91276 1.70848 1.42308 1.06775 1.31499 0.84236 0.77723 0.75563 0.76826 1.20309 1.20448 1.19989 1.86558 1.75207 1.42761 1.20575 1.23235 0.74903 0.86051 0.86546 1.90577 1.49453 1.16832 1.84566 1.20683 1.04541 0.90928 0.83921 1.45667 1.67754 1.13001 1.10654 1.18049 0.77073 0.88114 0.81644 1.90808 1.49890 1.19395 1.81051 1.19950 1.05951 0.93620 0.95161 1.21298 0.95208 0.91374 0.99426 1.21120 1.03365 1.01495 0.91885 1.18002 0.99211 0.86241 0.86163 1.91532 1.93260 1.64074 1.62477 1.21155 1.04318 0.91165 1.01513 1.21153 0.92916 1.00335 0.90372 0.92577 0.91120 0.95046 0.91544 0.86959 0.87055 0.74951 0.84128 0.83829 0.83864 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.27 37.16 0.34 -3.29 16 2 C 0.20 4.81 2.15 -27.89 -0.06 4.75 16 3 H 0.04 0.96 5.73 -51.93 -0.30 0.67 16 4 C -0.62 -17.15 9.11 -34.44 -0.31 -17.47 16 5 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.05 1.30 5.19 -17.82 -0.09 1.21 16 7 N -0.88 -25.91 13.70 55.43 0.76 -25.15 16 8 Si 1.03 24.11 26.44 -169.99 -4.50 19.62 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -5.96 6.15 56.52 0.35 -5.61 16 12 O -0.34 -7.30 9.86 -39.26 -0.39 -7.69 16 13 C 0.45 8.07 8.00 36.01 0.29 8.36 16 14 O -0.52 -10.11 14.89 -18.75 -0.28 -10.39 16 15 C 0.12 1.69 6.27 -5.19 -0.03 1.66 16 16 N -0.71 -8.69 5.48 -62.47 -0.34 -9.03 16 17 C 0.56 6.92 7.77 -12.38 -0.10 6.82 16 18 O -0.53 -8.03 16.34 5.30 0.09 -7.94 16 19 C -0.14 -1.41 5.87 -104.96 -0.62 -2.03 16 20 C -0.05 -0.44 9.54 -39.20 -0.37 -0.82 16 21 C -0.16 -1.21 10.01 -39.57 -0.40 -1.60 16 22 C 0.12 1.01 7.31 -39.28 -0.29 0.72 16 23 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 24 C -0.16 -1.22 10.01 -39.58 -0.40 -1.61 16 25 C -0.03 -0.25 9.59 -39.20 -0.38 -0.63 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.58 5.48 -51.93 -0.28 1.29 16 28 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 30 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.41 4.61 5.47 -40.82 -0.22 4.39 16 33 H 0.14 0.96 6.40 -52.49 -0.34 0.63 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 1.21 7.65 -52.49 -0.40 0.81 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -31.68 320.61 -5.90 -37.59 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.71 Total: 3.22 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.41 Total: -3.91 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.42 Total: -34.18 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.58 Total: -26.02 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.50 Total: 19.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.68 -5.90 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343464443.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.440 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds